RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 PRR3P79522 188 aaKnown RBP9.16□□□□□ -0.94
CCDC88C-204ENST00000389857 SPINK1P00995 79 aa9.16□□□□□ -0.94
CCDC88C-204ENST00000389857 SPG11Q96JI7 2443 aa9.16□□□□□ -0.94
CCDC88C-204ENST00000389857 Q6ZTC4 211 aa9.15□□□□□ -0.94
CCDC88C-204ENST00000389857 Q8N3U1 123 aa9.15□□□□□ -0.94
CCDC88C-204ENST00000389857 MUC6Q6W4X9 2439 aa9.15□□□□□ -0.94
CCDC88C-204ENST00000389857 HCG22E2RYF7 251 aa9.15□□□□□ -0.94
CCDC88C-204ENST00000389857 MUC22E2RYF6 1773 aaPredicted RBP9.15□□□□□ -0.94
CCDC88C-204ENST00000389857 A0A1B0GUV1 79 aa9.15□□□□□ -0.95
CCDC88C-204ENST00000389857 AMELXQ99217 191 aa9.14□□□□□ -0.95
CCDC88C-204ENST00000389857 TET2Q6N021 2002 aaPredicted RBP9.14□□□□□ -0.95
CCDC88C-204ENST00000389857 hDV103S1A0JD37 113 aa9.14□□□□□ -0.95
CCDC88C-204ENST00000389857 BRI3O95415 125 aa9.14□□□□□ -0.95
CCDC88C-204ENST00000389857 SRCAPQ6ZRS2 3230 aa9.14□□□□□ -0.95
CCDC88C-204ENST00000389857 EDN2P20800 178 aa9.13□□□□□ -0.95
CCDC88C-204ENST00000389857 A0A087WSZ3 146 aa9.13□□□□□ -0.95
CCDC88C-204ENST00000389857 SBSPONQ8IVN8 264 aa9.13□□□□□ -0.95
CCDC88C-204ENST00000389857 ADAMTS20P59510 1910 aa9.12□□□□□ -0.95
CCDC88C-204ENST00000389857 BEAN1Q3B7T3 259 aa9.12□□□□□ -0.95
CCDC88C-204ENST00000389857 PTPN13Q12923 2485 aa9.12□□□□□ -0.95
CCDC88C-204ENST00000389857 COL5A1P20908 1838 aaPredicted RBP9.12□□□□□ -0.95
CCDC88C-204ENST00000389857 A0A087WVE0 104 aa9.12□□□□□ -0.95
CCDC88C-204ENST00000389857 PSPHP1O15172 72 aa9.12□□□□□ -0.95
CCDC88C-204ENST00000389857 SMR3AQ99954 134 aa9.12□□□□□ -0.95
CCDC88C-204ENST00000389857 LYPD5Q6UWN5 251 aa9.11□□□□□ -0.95
CCDC88C-204ENST00000389857 AVPP01185 164 aa9.11□□□□□ -0.95
CCDC88C-204ENST00000389857 CRYGAP11844 174 aa9.11□□□□□ -0.95
CCDC88C-204ENST00000389857 TSPEAR-AS2P59090 65 aa9.11□□□□□ -0.95
CCDC88C-204ENST00000389857 ADAMTSL4-AS1Q5T5F5 129 aa9.1□□□□□ -0.95
CCDC88C-204ENST00000389857 ZNF580Q9UK33 172 aa9.1□□□□□ -0.95
CCDC88C-204ENST00000389857 Q8N2B8 174 aa9.1□□□□□ -0.95
CCDC88C-204ENST00000389857 NHLRC4P0CG21 123 aaPredicted RBP9.1□□□□□ -0.95
CCDC88C-204ENST00000389857 LINC00337Q8N6G1 96 aa9.09□□□□□ -0.95
CCDC88C-204ENST00000389857 CXCL6P80162 114 aa9.09□□□□□ -0.95
CCDC88C-204ENST00000389857 C7orf65Q6ZTY9 151 aa9.09□□□□□ -0.95
CCDC88C-204ENST00000389857 ZFHX2Q9C0A1 2572 aaPredicted RBP9.09□□□□□ -0.95
CCDC88C-204ENST00000389857 DEFB116Q30KQ4 102 aa9.08□□□□□ -0.96
CCDC88C-204ENST00000389857 ANKHD1Q8IWZ3 2542 aaKnown RBP9.07□□□□□ -0.96
CCDC88C-204ENST00000389857 COX8CQ7Z4L0 72 aa9.07□□□□□ -0.96
CCDC88C-204ENST00000389857 TMEM254Q8TBM7 123 aa9.07□□□□□ -0.96
CCDC88C-204ENST00000389857 C1orf64Q8NEQ6 169 aa9.06□□□□□ -0.96
CCDC88C-204ENST00000389857 CSPG4Q6UVK1 2322 aa9.05□□□□□ -0.96
CCDC88C-204ENST00000389857 URB1-AS1Q96HZ7 61 aa9.05□□□□□ -0.96
CCDC88C-204ENST00000389857 TTC28Q96AY4 2481 aa9.05□□□□□ -0.96
CCDC88C-204ENST00000389857 CDSNQ15517 529 aa9.05□□□□□ -0.96
CCDC88C-204ENST00000389857 PRLHP81277 87 aa9.05□□□□□ -0.96
CCDC88C-204ENST00000389857 Q6ZRU5 148 aa9.04□□□□□ -0.96
CCDC88C-204ENST00000389857 IGKV2D-30A0A075B6S6 120 aa9.04□□□□□ -0.96
CCDC88C-204ENST00000389857 IGKV2-30P06310 120 aa9.04□□□□□ -0.96
CCDC88C-204ENST00000389857 SMCR5Q8TEV8 140 aa9.04□□□□□ -0.96
CCDC88C-204ENST00000389857 Q6ZSN1 163 aa9.04□□□□□ -0.96
CCDC88C-204ENST00000389857 TP53AIP1Q9HCN2 124 aa9.04□□□□□ -0.96
CCDC88C-204ENST00000389857 BDP1A6H8Y1 2624 aa9.03□□□□□ -0.96
CCDC88C-204ENST00000389857 PRO3102Q9H379 93 aa9.03□□□□□ -0.96
CCDC88C-204ENST00000389857 C22orf24Q9Y442 160 aa9.03□□□□□ -0.96
CCDC88C-204ENST00000389857 DOPEY1Q5JWR5 2465 aa9.03□□□□□ -0.96
CCDC88C-204ENST00000389857 A0A1B0GU69 56 aa9.02□□□□□ -0.97
CCDC88C-204ENST00000389857 ACYP2P14621 99 aa9.01□□□□□ -0.97
CCDC88C-204ENST00000389857 LINC00310P59036 64 aa9□□□□□ -0.97
CCDC88C-204ENST00000389857 KRTAP10-9P60411 292 aa9□□□□□ -0.97
CCDC88C-204ENST00000389857 CCDC168Q8NDH2 2452 aa9□□□□□ -0.97
CCDC88C-204ENST00000389857 LINC00846Q9NV44 126 aa9□□□□□ -0.97
CCDC88C-204ENST00000389857 FHL3Q13643 280 aa8.99□□□□□ -0.97
CCDC88C-204ENST00000389857 A8MTW9 85 aa8.99□□□□□ -0.97
CCDC88C-204ENST00000389857 ABCA2Q9BZC7 2435 aa8.99□□□□□ -0.97
CCDC88C-204ENST00000389857 KIAA0087Q14695 138 aa8.98□□□□□ -0.97
CCDC88C-204ENST00000389857 SMIM29Q86T20 159 aa8.97□□□□□ -0.97
CCDC88C-204ENST00000389857 GOLGB1Q14789 3259 aaKnown RBP8.97□□□□□ -0.97
CCDC88C-204ENST00000389857 SPAG11AQ6PDA7 123 aa8.97□□□□□ -0.97
CCDC88C-204ENST00000389857 NOTCH2Q04721 2471 aa8.96□□□□□ -0.98
CCDC88C-204ENST00000389857 SPACA4Q8TDM5 124 aa8.95□□□□□ -0.98
CCDC88C-204ENST00000389857 NAV3Q8IVL0 2385 aa8.95□□□□□ -0.98
CCDC88C-204ENST00000389857 MOBPQ13875 183 aa8.95□□□□□ -0.98
CCDC88C-204ENST00000389857 A0A1B0GW54 56 aa8.95□□□□□ -0.98
CCDC88C-204ENST00000389857 MDFIQ99750 246 aa8.94□□□□□ -0.98
CCDC88C-204ENST00000389857 C6orf48Q9UBA6 75 aa8.93□□□□□ -0.98
CCDC88C-204ENST00000389857 SPATA3Q8NHX4 192 aa8.93□□□□□ -0.98
CCDC88C-204ENST00000389857 A0A096LNJ9 63 aa8.93□□□□□ -0.98
CCDC88C-204ENST00000389857 Q9UF83 564 aa8.92□□□□□ -0.98
CCDC88C-204ENST00000389857 ACACBO00763 2458 aa8.92□□□□□ -0.98
CCDC88C-204ENST00000389857 LINC01546A6NGU7 62 aa8.92□□□□□ -0.98
CCDC88C-204ENST00000389857 IGLV5-39A0A0G2JS06 123 aa8.91□□□□□ -0.98
CCDC88C-204ENST00000389857 BCE1O60756 84 aa8.91□□□□□ -0.98
CCDC88C-204ENST00000389857 H3BPC8 53 aa8.91□□□□□ -0.98
CCDC88C-204ENST00000389857 PLA2G1BP04054 148 aaKnown RBP8.91□□□□□ -0.98
CCDC88C-204ENST00000389857 LINC00167Q96N53 147 aa8.9□□□□□ -0.98
CCDC88C-204ENST00000389857 LINC00313P59037 77 aa8.9□□□□□ -0.98
CCDC88C-204ENST00000389857 FAM229AH3BQW9 127 aa8.9□□□□□ -0.98
CCDC88C-204ENST00000389857 HIVEP3Q5T1R4 2406 aa8.89□□□□□ -0.99
CCDC88C-204ENST00000389857 C11orf72Q8NBR9 251 aa8.89□□□□□ -0.99
CCDC88C-204ENST00000389857 KIF25-AS1Q9Y6Z4 181 aa8.89□□□□□ -0.99
CCDC88C-204ENST00000389857 H3BNG1 76 aa8.88□□□□□ -0.99
CCDC88C-204ENST00000389857 Q8NBF4 154 aa8.88□□□□□ -0.99
CCDC88C-204ENST00000389857 COL27A1Q8IZC6 1860 aaPredicted RBP8.87□□□□□ -0.99
CCDC88C-204ENST00000389857 ELOF1P60002 83 aaKnown RBP8.87□□□□□ -0.99
CCDC88C-204ENST00000389857 PRO0628Q9UI54 55 aa8.87□□□□□ -0.99
CCDC88C-204ENST00000389857 SERTAD4-AS1Q5TG53 156 aa8.86□□□□□ -0.99
CCDC88C-204ENST00000389857 PTPRBP23467 1997 aa8.86□□□□□ -0.99
CCDC88C-204ENST00000389857 C10orf142B7Z368 130 aa8.86□□□□□ -0.99
CCDC88C-204ENST00000389857 IGHV3OR16-9A0A0B4J2B5 98 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms