RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 RPL36AP83881 106 aaKnown RBP10.05□□□□□ -0.8
HMGA1-203ENST00000374116 RPL36ALQ969Q0 106 aaKnown RBP10.05□□□□□ -0.8
HMGA1-203ENST00000374116 NOP10Q9NPE3 64 aaKnown RBP10.04□□□□□ -0.8
HMGA1-203ENST00000374116 A0A0J9YWU9 116 aa10.03□□□□□ -0.8
HMGA1-203ENST00000374116 SMIM9A6NGZ8 99 aa10.03□□□□□ -0.8
HMGA1-203ENST00000374116 DAZ4Q86SG3 579 aaKnown RBP10.03□□□□□ -0.8
HMGA1-203ENST00000374116 DAZ3Q9NR90 486 aaKnown RBP10.03□□□□□ -0.8
HMGA1-203ENST00000374116 IGHV4-28A0A0C4DH34 117 aa10.03□□□□□ -0.8
HMGA1-203ENST00000374116 TIMM17BO60830 172 aa10.03□□□□□ -0.8
HMGA1-203ENST00000374116 IGHV3-30-3P0DP02 117 aa10.03□□□□□ -0.8
HMGA1-203ENST00000374116 MIAQ16674 131 aa10.03□□□□□ -0.8
HMGA1-203ENST00000374116 RNASE13Q5GAN3 156 aaKnown RBP10.03□□□□□ -0.8
HMGA1-203ENST00000374116 C5orf38Q86SI9 138 aa10.03□□□□□ -0.8
HMGA1-203ENST00000374116 IGHV3-64A0A075B6Q5 118 aa10.02□□□□□ -0.81
HMGA1-203ENST00000374116 CRYGAP11844 174 aa10.02□□□□□ -0.81
HMGA1-203ENST00000374116 HERVK_113P63121 156 aa10.02□□□□□ -0.81
HMGA1-203ENST00000374116 Q8NAQ8 132 aa10.02□□□□□ -0.81
HMGA1-203ENST00000374116 IGHV1-58A0A0C4DH39 117 aa10.01□□□□□ -0.81
HMGA1-203ENST00000374116 COX7CP15954 63 aa10.01□□□□□ -0.81
HMGA1-203ENST00000374116 DGAT2L7PQ6IED9 249 aa10.01□□□□□ -0.81
HMGA1-203ENST00000374116 TIRAPP58753 221 aa10□□□□□ -0.81
HMGA1-203ENST00000374116 HIST1H4AP62805 103 aaKnown RBP10□□□□□ -0.81
HMGA1-203ENST00000374116 TRGV2A0A075B6R0 118 aa9.99□□□□□ -0.81
HMGA1-203ENST00000374116 VSIG2Q96IQ7 327 aa9.99□□□□□ -0.81
HMGA1-203ENST00000374116 DAND5Q8N907 189 aa9.98□□□□□ -0.81
HMGA1-203ENST00000374116 OR13C6PQ8NH95 151 aa9.98□□□□□ -0.81
HMGA1-203ENST00000374116 CLEC2BQ92478 149 aa9.98□□□□□ -0.81
HMGA1-203ENST00000374116 C2orf48Q96LS8 159 aa9.98□□□□□ -0.81
HMGA1-203ENST00000374116 CELA1Q9UNI1 258 aa9.98□□□□□ -0.81
HMGA1-203ENST00000374116 IGLV5-45A0A087WSX0 123 aa9.98□□□□□ -0.81
HMGA1-203ENST00000374116 TRAV8-3A0A0A6YYJ7 113 aa9.98□□□□□ -0.81
HMGA1-203ENST00000374116 TRBV6-4A0A1B0GX49 114 aa9.98□□□□□ -0.81
HMGA1-203ENST00000374116 MIFP14174 115 aa9.98□□□□□ -0.81
HMGA1-203ENST00000374116 NTM-AS1Q6ZSK4 140 aa9.98□□□□□ -0.81
HMGA1-203ENST00000374116 SMCR5Q8TEV8 140 aa9.98□□□□□ -0.81
HMGA1-203ENST00000374116 FAM19A5Q7Z5A7 132 aaPredicted RBP9.97□□□□□ -0.81
HMGA1-203ENST00000374116 FAM19A3Q7Z5A8 133 aa9.97□□□□□ -0.81
HMGA1-203ENST00000374116 FAM222AQ5U5X8 452 aa9.96□□□□□ -0.81
HMGA1-203ENST00000374116 NDUFA12Q9UI09 145 aa9.96□□□□□ -0.81
HMGA1-203ENST00000374116 ATOX1O00244 68 aa9.96□□□□□ -0.82
HMGA1-203ENST00000374116 ADAMTSL4-AS1Q5T5F5 129 aa9.96□□□□□ -0.82
HMGA1-203ENST00000374116 TRGV4A0A0C4DH28 118 aa9.95□□□□□ -0.82
HMGA1-203ENST00000374116 NANOS2P60321 138 aaKnown RBP9.95□□□□□ -0.82
HMGA1-203ENST00000374116 CDKN2A-AS1Q9UH64 79 aa9.95□□□□□ -0.82
HMGA1-203ENST00000374116 CSMD3Q7Z407 3707 aa9.94□□□□□ -0.82
HMGA1-203ENST00000374116 COX7A2LO14548 114 aa9.94□□□□□ -0.82
HMGA1-203ENST00000374116 TRACP01848 142 aa9.94□□□□□ -0.82
HMGA1-203ENST00000374116 LINC00612Q8N6U2 182 aa9.94□□□□□ -0.82
HMGA1-203ENST00000374116 TMEM243Q9BU79 118 aa9.94□□□□□ -0.82
HMGA1-203ENST00000374116 LOC107984640A0A0U1RRK4 108 aa9.93□□□□□ -0.82
HMGA1-203ENST00000374116 LINC00242Q5T6M2 205 aa9.93□□□□□ -0.82
HMGA1-203ENST00000374116 GAGE2AQ6NT46 116 aa9.93□□□□□ -0.82
HMGA1-203ENST00000374116 C11orf68Q9H3H3 251 aaKnown RBP9.93□□□□□ -0.82
HMGA1-203ENST00000374116 CDC42SE2Q9NRR3 84 aa9.93□□□□□ -0.82
HMGA1-203ENST00000374116 UBE2L6O14933 153 aa9.93□□□□□ -0.82
HMGA1-203ENST00000374116 TMEM258P61165 79 aa9.93□□□□□ -0.82
HMGA1-203ENST00000374116 PRSS2P07478 247 aa9.92□□□□□ -0.82
HMGA1-203ENST00000374116 DEFB130BP0DP73 79 aa9.92□□□□□ -0.82
HMGA1-203ENST00000374116 DEFB130AP0DP74 79 aa9.92□□□□□ -0.82
HMGA1-203ENST00000374116 COX6A2Q02221 97 aa9.92□□□□□ -0.82
HMGA1-203ENST00000374116 FHL2Q14192 279 aa9.92□□□□□ -0.82
HMGA1-203ENST00000374116 C11orf45Q8TAV5 145 aa9.92□□□□□ -0.82
HMGA1-203ENST00000374116 DNAH7Q8WXX0 4024 aa9.92□□□□□ -0.82
HMGA1-203ENST00000374116 NDUFA1O15239 70 aa9.91□□□□□ -0.82
HMGA1-203ENST00000374116 INAFM2P0DMQ5 153 aa9.91□□□□□ -0.82
HMGA1-203ENST00000374116 IGLV5-39A0A0G2JS06 123 aa9.91□□□□□ -0.82
HMGA1-203ENST00000374116 WWC2-AS2Q96NR7 200 aa9.91□□□□□ -0.82
HMGA1-203ENST00000374116 LOC100131303A0A0U1RQF7 123 aa9.9□□□□□ -0.82
HMGA1-203ENST00000374116 Q6ZTC4 211 aa9.9□□□□□ -0.82
HMGA1-203ENST00000374116 KLK5Q9Y337 293 aaPredicted RBP9.89□□□□□ -0.83
HMGA1-203ENST00000374116 TRAV13-1A0A0B4J241 112 aa9.89□□□□□ -0.83
HMGA1-203ENST00000374116 SPART-AS1P0CW21 52 aa9.89□□□□□ -0.83
HMGA1-203ENST00000374116 COPS9Q8WXC6 57 aa9.89□□□□□ -0.83
HMGA1-203ENST00000374116 TRBV6-8A0A0A6YYG3 113 aa9.87□□□□□ -0.83
HMGA1-203ENST00000374116 SMIM1B2RUZ4 78 aa9.87□□□□□ -0.83
HMGA1-203ENST00000374116 HTN3P15516 51 aa9.87□□□□□ -0.83
HMGA1-203ENST00000374116 CIRBPQ14011 172 aaKnown RBP9.87□□□□□ -0.83
HMGA1-203ENST00000374116 C22orf24Q9Y442 160 aa9.87□□□□□ -0.83
HMGA1-203ENST00000374116 DAD1P61803 113 aa9.86□□□□□ -0.83
HMGA1-203ENST00000374116 RPL18AQ02543 176 aaKnown RBP9.86□□□□□ -0.83
HMGA1-203ENST00000374116 MUC7Q8TAX7 377 aa9.86□□□□□ -0.83
HMGA1-203ENST00000374116 UPK3BQ9BT76 320 aa9.86□□□□□ -0.83
HMGA1-203ENST00000374116 STARD9Q9P2P6 4700 aa9.86□□□□□ -0.83
HMGA1-203ENST00000374116 F5H768 121 aa9.85□□□□□ -0.83
HMGA1-203ENST00000374116 Q6JHZ5 121 aa9.85□□□□□ -0.83
HMGA1-203ENST00000374116 DPH3Q96FX2 82 aa9.85□□□□□ -0.83
HMGA1-203ENST00000374116 LYRM9A8MSI8 78 aa9.84□□□□□ -0.83
HMGA1-203ENST00000374116 LINC00308Q8TCZ7 52 aa9.84□□□□□ -0.83
HMGA1-203ENST00000374116 Q9H8V8 135 aa9.84□□□□□ -0.83
HMGA1-203ENST00000374116 SERP2Q8N6R1 65 aa9.84□□□□□ -0.83
HMGA1-203ENST00000374116 hADV29S1A0JD25 119 aa9.83□□□□□ -0.84
HMGA1-203ENST00000374116 BAALC-AS2P0C853 105 aa9.83□□□□□ -0.84
HMGA1-203ENST00000374116 TENM2Q9NT68 2774 aa9.83□□□□□ -0.84
HMGA1-203ENST00000374116 DEFB131BA0A096LNP1 70 aa9.82□□□□□ -0.84
HMGA1-203ENST00000374116 ZNF625Q96I27 306 aaPredicted RBP9.82□□□□□ -0.84
HMGA1-203ENST00000374116 GYPEP15421 78 aa9.81□□□□□ -0.84
HMGA1-203ENST00000374116 CASC10Q5T4H9 136 aa9.81□□□□□ -0.84
HMGA1-203ENST00000374116 PRO0255Q9UI72 69 aa9.81□□□□□ -0.84
HMGA1-203ENST00000374116 LYSTQ99698 3801 aa9.81□□□□□ -0.84
HMGA1-203ENST00000374116 IGLV4-60A0A075B6I1 120 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 165.7 ms