RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 IGLV5-45A0A087WSX0 123 aa11.71□□□□□ -0.53
CKS1B-203ENST00000368439 SRSF9Q13242 221 aaKnown RBP eCLIP11.71□□□□□ -0.53
CKS1B-203ENST00000368439 PHF5AQ7RTV0 110 aaKnown RBP11.71□□□□□ -0.53
CKS1B-203ENST00000368439 CST9LQ9H4G1 147 aa11.71□□□□□ -0.53
CKS1B-203ENST00000368439 GEMIN7Q9H840 131 aaKnown RBP11.71□□□□□ -0.53
CKS1B-203ENST00000368439 SMCO4Q9NRQ5 59 aa11.71□□□□□ -0.53
CKS1B-203ENST00000368439 TINCRA0A1B0GVN0 87 aa11.7□□□□□ -0.54
CKS1B-203ENST00000368439 NDUFC2-KCTD14E9PQ53 114 aa11.7□□□□□ -0.54
CKS1B-203ENST00000368439 GAGE2EQ4V326 116 aa11.7□□□□□ -0.54
CKS1B-203ENST00000368439 TOMM7Q9P0U1 55 aa11.7□□□□□ -0.54
CKS1B-203ENST00000368439 GAGE2DQ9UEU5 116 aa11.7□□□□□ -0.54
CKS1B-203ENST00000368439 PRSS2P07478 247 aa11.69□□□□□ -0.54
CKS1B-203ENST00000368439 PACRGQ96M98 296 aaPredicted RBP11.69□□□□□ -0.54
CKS1B-203ENST00000368439 SMIM1B2RUZ4 78 aa11.68□□□□□ -0.54
CKS1B-203ENST00000368439 LINC00614P0C842 121 aa11.68□□□□□ -0.54
CKS1B-203ENST00000368439 PMVKQ15126 192 aa11.68□□□□□ -0.54
CKS1B-203ENST00000368439 C6orf226Q5I0X4 101 aa11.68□□□□□ -0.54
CKS1B-203ENST00000368439 LINC00469Q8N7U9 141 aa11.68□□□□□ -0.54
CKS1B-203ENST00000368439 PSORS1C2Q9UIG4 136 aa11.68□□□□□ -0.54
CKS1B-203ENST00000368439 CKS1BP61024 79 aa11.67□□□□□ -0.54
CKS1B-203ENST00000368439 C9orf129Q5T035 196 aaKnown RBP11.67□□□□□ -0.54
CKS1B-203ENST00000368439 SPINK6Q6UWN8 80 aa11.67□□□□□ -0.54
CKS1B-203ENST00000368439 KRTAP11-1Q8IUC1 163 aa11.67□□□□□ -0.54
CKS1B-203ENST00000368439 PDZD11Q5EBL8 140 aa11.65□□□□□ -0.54
CKS1B-203ENST00000368439 FAM19A5Q7Z5A7 132 aaPredicted RBP11.65□□□□□ -0.54
CKS1B-203ENST00000368439 F8VRH5 84 aa11.64□□□□□ -0.55
CKS1B-203ENST00000368439 HBDP02042 147 aa11.64□□□□□ -0.55
CKS1B-203ENST00000368439 LINC01600Q96MT4 127 aa11.64□□□□□ -0.55
CKS1B-203ENST00000368439 PMCHL1Q16048 86 aa11.63□□□□□ -0.55
CKS1B-203ENST00000368439 SERTAD4-AS1Q5TG53 156 aa11.63□□□□□ -0.55
CKS1B-203ENST00000368439 IGLC3P0DOY3 106 aa11.62□□□□□ -0.55
CKS1B-203ENST00000368439 CXCL5P42830 114 aa11.62□□□□□ -0.55
CKS1B-203ENST00000368439 COX7B2Q8TF08 81 aa11.62□□□□□ -0.55
CKS1B-203ENST00000368439 SPINK8P0C7L1 97 aa11.61□□□□□ -0.55
CKS1B-203ENST00000368439 CBLN2Q8IUK8 224 aa11.61□□□□□ -0.55
CKS1B-203ENST00000368439 M0QXV9 152 aa11.6□□□□□ -0.55
CKS1B-203ENST00000368439 RAB5BP61020 215 aa11.6□□□□□ -0.55
CKS1B-203ENST00000368439 C1orf137Q5JT78 98 aa11.6□□□□□ -0.55
CKS1B-203ENST00000368439 XAGE1AQ9HD64 81 aa11.58□□□□□ -0.56
CKS1B-203ENST00000368439 IGLV5-39A0A0G2JS06 123 aa11.57□□□□□ -0.56
CKS1B-203ENST00000368439 ZNF22P17026 224 aaPredicted RBP11.57□□□□□ -0.56
CKS1B-203ENST00000368439 NDUFA6P56556 154 aa11.57□□□□□ -0.56
CKS1B-203ENST00000368439 REG3GQ6UW15 175 aa11.57□□□□□ -0.56
CKS1B-203ENST00000368439 SLC7A5P1Q8MH63 180 aa11.57□□□□□ -0.56
CKS1B-203ENST00000368439 H3BRM9 83 aa11.56□□□□□ -0.56
CKS1B-203ENST00000368439 ATP5LO75964 103 aa11.56□□□□□ -0.56
CKS1B-203ENST00000368439 IGLV7-43P04211 117 aa11.56□□□□□ -0.56
CKS1B-203ENST00000368439 KRTAP10-8P60410 259 aa11.56□□□□□ -0.56
CKS1B-203ENST00000368439 CHCHD1Q96BP2 118 aaKnown RBP11.55□□□□□ -0.56
CKS1B-203ENST00000368439 C11orf86A6NJI1 115 aa11.54□□□□□ -0.56
CKS1B-203ENST00000368439 ODF1Q14990 250 aa11.54□□□□□ -0.56
CKS1B-203ENST00000368439 BAGE3Q86Y29 109 aa11.54□□□□□ -0.56
CKS1B-203ENST00000368439 C22orf24Q9Y442 160 aa11.53□□□□□ -0.56
CKS1B-203ENST00000368439 UBE2BP63146 152 aa11.52□□□□□ -0.57
CKS1B-203ENST00000368439 TRGC2P03986 189 aa11.5□□□□□ -0.57
CKS1B-203ENST00000368439 TP73-AS1Q9UF72 201 aa11.5□□□□□ -0.57
CKS1B-203ENST00000368439 PLA2G2DQ9UNK4 145 aa11.5□□□□□ -0.57
CKS1B-203ENST00000368439 TRAV12-1A0A0B4J245 112 aa11.49□□□□□ -0.57
CKS1B-203ENST00000368439 CHTOPQ9Y3Y2 248 aaKnown RBP11.49□□□□□ -0.57
CKS1B-203ENST00000368439 LINC00310P59036 64 aa11.48□□□□□ -0.57
CKS1B-203ENST00000368439 DIRC1Q969H9 104 aa11.48□□□□□ -0.57
CKS1B-203ENST00000368439 IFI27L1Q96BM0 104 aa11.48□□□□□ -0.57
CKS1B-203ENST00000368439 H0Y9J4 135 aa11.47□□□□□ -0.57
CKS1B-203ENST00000368439 LBHQ53QV2 105 aaPredicted RBP11.47□□□□□ -0.57
CKS1B-203ENST00000368439 TMEM170BQ5T4T1 132 aa11.47□□□□□ -0.57
CKS1B-203ENST00000368439 FAM19A2Q8N3H0 131 aa11.47□□□□□ -0.57
CKS1B-203ENST00000368439 COLCA2A8K830 154 aa11.46□□□□□ -0.57
CKS1B-203ENST00000368439 MRPL55Q7Z7F7 128 aaKnown RBP11.46□□□□□ -0.57
CKS1B-203ENST00000368439 UBR4Q5T4S7 5183 aa11.46□□□□□ -0.58
CKS1B-203ENST00000368439 IGLV5-37A0A075B6J1 123 aa11.45□□□□□ -0.58
CKS1B-203ENST00000368439 HSBP1O75506 76 aa11.45□□□□□ -0.58
CKS1B-203ENST00000368439 TMEM223A0PJW6 202 aa11.44□□□□□ -0.58
CKS1B-203ENST00000368439 NUPR1O60356 82 aa11.44□□□□□ -0.58
CKS1B-203ENST00000368439 ZNF625Q96I27 306 aaPredicted RBP11.44□□□□□ -0.58
CKS1B-203ENST00000368439 LINC00167Q96N53 147 aa11.44□□□□□ -0.58
CKS1B-203ENST00000368439 KRTAP1-4P0C5Y4 121 aa11.43□□□□□ -0.58
CKS1B-203ENST00000368439 PFN2P35080 140 aa11.43□□□□□ -0.58
CKS1B-203ENST00000368439 ERG28Q9UKR5 140 aa11.43□□□□□ -0.58
CKS1B-203ENST00000368439 SERF1AO75920 110 aa11.42□□□□□ -0.58
CKS1B-203ENST00000368439 COX17Q14061 63 aa11.41□□□□□ -0.58
CKS1B-203ENST00000368439 ZNF861PO60384 105 aa11.4□□□□□ -0.58
CKS1B-203ENST00000368439 SND1-IT1Q9HBX3 110 aa11.4□□□□□ -0.58
CKS1B-203ENST00000368439 RPL37AP8A6NKH3 93 aa11.39□□□□□ -0.59
CKS1B-203ENST00000368439 SFTA2Q6UW10 78 aa11.39□□□□□ -0.59
CKS1B-203ENST00000368439 PRR26Q8N8Z3 221 aa11.39□□□□□ -0.59
CKS1B-203ENST00000368439 LRP2P98164 4655 aa11.38□□□□□ -0.59
CKS1B-203ENST00000368439 GAGE10A6NGK3 116 aa11.38□□□□□ -0.59
CKS1B-203ENST00000368439 VPREB1P12018 145 aa11.38□□□□□ -0.59
CKS1B-203ENST00000368439 BCE1O60756 84 aa11.37□□□□□ -0.59
CKS1B-203ENST00000368439 SCO1O75880 301 aa11.37□□□□□ -0.59
CKS1B-203ENST00000368439 LEPROTL1O95214 131 aa11.37□□□□□ -0.59
CKS1B-203ENST00000368439 Q8NDZ9 215 aa11.37□□□□□ -0.59
CKS1B-203ENST00000368439 NKAPP1Q8N9T2 125 aa11.36□□□□□ -0.59
CKS1B-203ENST00000368439 IGLV1-50A0A075B6I6 118 aa11.33□□□□□ -0.6
CKS1B-203ENST00000368439 H0Y8G0 127 aa11.33□□□□□ -0.6
CKS1B-203ENST00000368439 KRTAP13-1Q8IUC0 172 aa11.33□□□□□ -0.6
CKS1B-203ENST00000368439 IGKV2-28A0A075B6P5 120 aa11.31□□□□□ -0.6
CKS1B-203ENST00000368439 IGKV2D-28P01615 120 aa11.31□□□□□ -0.6
CKS1B-203ENST00000368439 FABP4P15090 132 aa11.31□□□□□ -0.6
CKS1B-203ENST00000368439 RPL28P46779 137 aaKnown RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms