RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ATRQ13535 2644 aa14.36□□□□□ -0.11
CCDC88B-203ENST00000359902 IGKV2-28A0A075B6P5 120 aa14.36□□□□□ -0.11
CCDC88B-203ENST00000359902 IGKV2D-28P01615 120 aa14.36□□□□□ -0.11
CCDC88B-203ENST00000359902 MIFP14174 115 aa14.36□□□□□ -0.11
CCDC88B-203ENST00000359902 C6orf226Q5I0X4 101 aa14.36□□□□□ -0.11
CCDC88B-203ENST00000359902 TRAV13-2A0A0B4J235 113 aa14.36□□□□□ -0.11
CCDC88B-203ENST00000359902 TEP1Q99973 2627 aaKnown RBP14.35□□□□□ -0.11
CCDC88B-203ENST00000359902 CCL18P55774 89 aa14.35□□□□□ -0.11
CCDC88B-203ENST00000359902 LINC00337Q8N6G1 96 aa14.35□□□□□ -0.11
CCDC88B-203ENST00000359902 PFN2P35080 140 aa14.35□□□□□ -0.11
CCDC88B-203ENST00000359902 ATP5G1P05496 136 aa14.34□□□□□ -0.11
CCDC88B-203ENST00000359902 LINC00269Q8N2A0 174 aa14.34□□□□□ -0.11
CCDC88B-203ENST00000359902 WIPF1O43516 503 aa14.33□□□□□ -0.11
CCDC88B-203ENST00000359902 CRPP02741 224 aa14.33□□□□□ -0.12
CCDC88B-203ENST00000359902 C11orf68Q9H3H3 251 aaKnown RBP14.33□□□□□ -0.12
CCDC88B-203ENST00000359902 IGHV4-30-4P0DP06 118 aa14.32□□□□□ -0.12
CCDC88B-203ENST00000359902 LINC01561Q8N1V8 128 aa14.32□□□□□ -0.12
CCDC88B-203ENST00000359902 Q8N3U1 123 aa14.32□□□□□ -0.12
CCDC88B-203ENST00000359902 RPL28P46779 137 aaKnown RBP14.32□□□□□ -0.12
CCDC88B-203ENST00000359902 Q8IZM0 81 aa14.32□□□□□ -0.12
CCDC88B-203ENST00000359902 TRRAPQ9Y4A5 3859 aa14.31□□□□□ -0.12
CCDC88B-203ENST00000359902 SPART-AS1P0CW21 52 aa14.31□□□□□ -0.12
CCDC88B-203ENST00000359902 SNCGO76070 127 aa14.3□□□□□ -0.12
CCDC88B-203ENST00000359902 FAM218AQ96MZ4 157 aa14.3□□□□□ -0.12
CCDC88B-203ENST00000359902 TRACP01848 142 aa14.29□□□□□ -0.12
CCDC88B-203ENST00000359902 CD164L2Q6UWJ8 174 aa14.29□□□□□ -0.12
CCDC88B-203ENST00000359902 TRAV8-4A0A0B4J246 113 aa14.29□□□□□ -0.12
CCDC88B-203ENST00000359902 ANGP03950 147 aaKnown RBP14.29□□□□□ -0.12
CCDC88B-203ENST00000359902 GAGE2BQ13066 116 aa14.29□□□□□ -0.12
CCDC88B-203ENST00000359902 GAGE2EQ4V326 116 aa14.29□□□□□ -0.12
CCDC88B-203ENST00000359902 DEFB121Q5J5C9 76 aa14.29□□□□□ -0.12
CCDC88B-203ENST00000359902 GAGE2DQ9UEU5 116 aa14.29□□□□□ -0.12
CCDC88B-203ENST00000359902 CHCHD10Q8WYQ3 142 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-203ENST00000359902 REG3AQ06141 175 aa14.27□□□□□ -0.12
CCDC88B-203ENST00000359902 HTN3P15516 51 aa14.27□□□□□ -0.13
CCDC88B-203ENST00000359902 MRPL23Q16540 153 aaKnown RBP14.27□□□□□ -0.13
CCDC88B-203ENST00000359902 SS18L2Q9UHA2 77 aa14.26□□□□□ -0.13
CCDC88B-203ENST00000359902 IGLV10-54A0A075B6I4 117 aa14.26□□□□□ -0.13
CCDC88B-203ENST00000359902 KIAA0087Q14695 138 aa14.26□□□□□ -0.13
CCDC88B-203ENST00000359902 SMIM11BQ8TCY0 68 aa14.26□□□□□ -0.13
CCDC88B-203ENST00000359902 NDUFV3P56181 108 aaKnown RBP14.24□□□□□ -0.13
CCDC88B-203ENST00000359902 B5MCH6 92 aa14.23□□□□□ -0.13
CCDC88B-203ENST00000359902 TTC32Q5I0X7 151 aa14.23□□□□□ -0.13
CCDC88B-203ENST00000359902 BAALC-AS2P0C853 105 aa14.23□□□□□ -0.13
CCDC88B-203ENST00000359902 LELP1Q5T871 98 aa14.23□□□□□ -0.13
CCDC88B-203ENST00000359902 NHLRC4P0CG21 123 aaPredicted RBP14.22□□□□□ -0.13
CCDC88B-203ENST00000359902 Q6Q795 121 aa14.21□□□□□ -0.13
CCDC88B-203ENST00000359902 MALP21145 153 aa14.2□□□□□ -0.14
CCDC88B-203ENST00000359902 C22orf24Q9Y442 160 aa14.2□□□□□ -0.14
CCDC88B-203ENST00000359902 CFAP161Q6P656 301 aa14.2□□□□□ -0.14
CCDC88B-203ENST00000359902 OXLD1Q5BKU9 147 aa14.19□□□□□ -0.14
CCDC88B-203ENST00000359902 CXCL5P42830 114 aa14.19□□□□□ -0.14
CCDC88B-203ENST00000359902 Q9HAA7 133 aa14.19□□□□□ -0.14
CCDC88B-203ENST00000359902 FAM240AA0A1B0GVK7 77 aa14.18□□□□□ -0.14
CCDC88B-203ENST00000359902 OR13C6PQ8NH95 151 aa14.18□□□□□ -0.14
CCDC88B-203ENST00000359902 H0YGX0 51 aa14.17□□□□□ -0.14
CCDC88B-203ENST00000359902 COX17Q14061 63 aa14.17□□□□□ -0.14
CCDC88B-203ENST00000359902 A0A087WYN8 130 aa14.16□□□□□ -0.14
CCDC88B-203ENST00000359902 KRTAP10-11P60412 298 aa14.16□□□□□ -0.14
CCDC88B-203ENST00000359902 C15orf53Q8NAA6 179 aa14.15□□□□□ -0.14
CCDC88B-203ENST00000359902 PRR34Q9NV39 138 aa14.15□□□□□ -0.14
CCDC88B-203ENST00000359902 C9orf116Q5BN46 136 aaPredicted RBP14.14□□□□□ -0.15
CCDC88B-203ENST00000359902 LYPD5Q6UWN5 251 aa14.14□□□□□ -0.15
CCDC88B-203ENST00000359902 KLK12Q9UKR0 248 aa14.14□□□□□ -0.15
CCDC88B-203ENST00000359902 KLK5Q9Y337 293 aaPredicted RBP14.14□□□□□ -0.15
CCDC88B-203ENST00000359902 PRR3P79522 188 aaKnown RBP14.13□□□□□ -0.15
CCDC88B-203ENST00000359902 RETNQ9HD89 108 aa14.13□□□□□ -0.15
CCDC88B-203ENST00000359902 ENHOQ6UWT2 76 aa14.12□□□□□ -0.15
CCDC88B-203ENST00000359902 CCDC179H3BU77 68 aa14.11□□□□□ -0.15
CCDC88B-203ENST00000359902 NDUFC2O95298 119 aa14.11□□□□□ -0.15
CCDC88B-203ENST00000359902 DNAL4O96015 105 aa14.1□□□□□ -0.15
CCDC88B-203ENST00000359902 F8P00451 2351 aa14.1□□□□□ -0.15
CCDC88B-203ENST00000359902 C6orf223Q8N319 242 aa14.1□□□□□ -0.15
CCDC88B-203ENST00000359902 NANOS2P60321 138 aaKnown RBP14.09□□□□□ -0.15
CCDC88B-203ENST00000359902 SPAG11BQ08648 103 aa14.09□□□□□ -0.15
CCDC88B-203ENST00000359902 C10orf25Q5T742 122 aa14.09□□□□□ -0.15
CCDC88B-203ENST00000359902 LECT2O14960 151 aa14.08□□□□□ -0.16
CCDC88B-203ENST00000359902 KRTAP24-1Q3LI83 254 aa14.08□□□□□ -0.16
CCDC88B-203ENST00000359902 UNQ6190/PRO20217Q6UXQ8 127 aa14.08□□□□□ -0.16
CCDC88B-203ENST00000359902 ACYP1P07311 99 aa14.08□□□□□ -0.16
CCDC88B-203ENST00000359902 LINC00526Q96FQ7 95 aa14.07□□□□□ -0.16
CCDC88B-203ENST00000359902 EGFEM1PQ0D2K5 195 aa14.07□□□□□ -0.16
CCDC88B-203ENST00000359902 H3BNG1 76 aa14.06□□□□□ -0.16
CCDC88B-203ENST00000359902 KPRPQ5T749 579 aaPredicted RBP14.06□□□□□ -0.16
CCDC88B-203ENST00000359902 Q8NDZ9 215 aa14.06□□□□□ -0.16
CCDC88B-203ENST00000359902 CYSRT1A8MQ03 144 aa14.05□□□□□ -0.16
CCDC88B-203ENST00000359902 A0A0J9YWU9 116 aa14.04□□□□□ -0.16
CCDC88B-203ENST00000359902 INAFM2P0DMQ5 153 aa14.04□□□□□ -0.16
CCDC88B-203ENST00000359902 Q6ZTC4 211 aa14.04□□□□□ -0.16
CCDC88B-203ENST00000359902 TMEM126AQ9H061 195 aa14.04□□□□□ -0.16
CCDC88B-203ENST00000359902 C9orf129Q5T035 196 aaKnown RBP14.02□□□□□ -0.16
CCDC88B-203ENST00000359902 WFDC10BQ8IUB3 73 aa14.02□□□□□ -0.16
CCDC88B-203ENST00000359902 SLPIP03973 132 aa14.02□□□□□ -0.17
CCDC88B-203ENST00000359902 MUC7Q8TAX7 377 aa14.01□□□□□ -0.17
CCDC88B-203ENST00000359902 NCR3O14931 201 aa14□□□□□ -0.17
CCDC88B-203ENST00000359902 C3orf56Q8N813 242 aa14□□□□□ -0.17
CCDC88B-203ENST00000359902 OBSCN-AS1Q96MR7 158 aa13.99□□□□□ -0.17
CCDC88B-203ENST00000359902 SMCR5Q8TEV8 140 aa13.99□□□□□ -0.17
CCDC88B-203ENST00000359902 SMIM20Q8N5G0 67 aa13.98□□□□□ -0.17
CCDC88B-203ENST00000359902 FBN1P35555 2871 aaKnown RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms