RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 IGHV4-30-4P0DP06 118 aa10.59□□□□□ -0.71
CHD4-201ENST00000357008 NANOS2P60321 138 aaKnown RBP10.59□□□□□ -0.71
CHD4-201ENST00000357008 LINC00575Q6W349 94 aa10.59□□□□□ -0.71
CHD4-201ENST00000357008 CEP192Q8TEP8 1941 aa10.59□□□□□ -0.71
CHD4-201ENST00000357008 REG3GQ6UW15 175 aa10.58□□□□□ -0.72
CHD4-201ENST00000357008 Q6ZSN1 163 aa10.58□□□□□ -0.72
CHD4-201ENST00000357008 A0A1B0GUV1 79 aa10.58□□□□□ -0.72
CHD4-201ENST00000357008 PRRC2AP48634 2157 aaKnown RBP10.58□□□□□ -0.72
CHD4-201ENST00000357008 Q6ZVQ6 151 aa10.58□□□□□ -0.72
CHD4-201ENST00000357008 DOPEY1Q5JWR5 2465 aa10.58□□□□□ -0.72
CHD4-201ENST00000357008 LINC01547P58512 204 aaPredicted RBP10.57□□□□□ -0.72
CHD4-201ENST00000357008 ESRGQ1W209 222 aa10.57□□□□□ -0.72
CHD4-201ENST00000357008 LINC01561Q8N1V8 128 aa10.57□□□□□ -0.72
CHD4-201ENST00000357008 LINC01546A6NGU7 62 aa10.57□□□□□ -0.72
CHD4-201ENST00000357008 TMEM254Q8TBM7 123 aa10.57□□□□□ -0.72
CHD4-201ENST00000357008 PIEZO2Q9H5I5 2752 aa10.57□□□□□ -0.72
CHD4-201ENST00000357008 C6orf223Q8N319 242 aa10.56□□□□□ -0.72
CHD4-201ENST00000357008 LRP4O75096 1905 aa10.56□□□□□ -0.72
CHD4-201ENST00000357008 F8WDY8 70 aa10.55□□□□□ -0.72
CHD4-201ENST00000357008 KIF25-AS1Q9Y6Z4 181 aa10.55□□□□□ -0.72
CHD4-201ENST00000357008 M0R2N4 97 aa10.55□□□□□ -0.72
CHD4-201ENST00000357008 LINC00337Q8N6G1 96 aa10.54□□□□□ -0.72
CHD4-201ENST00000357008 TRBV7-6A0A0J9YX20 115 aa10.53□□□□□ -0.72
CHD4-201ENST00000357008 C2orf48Q96LS8 159 aa10.52□□□□□ -0.73
CHD4-201ENST00000357008 CXCL6P80162 114 aa10.51□□□□□ -0.73
CHD4-201ENST00000357008 OXLD1Q5BKU9 147 aa10.51□□□□□ -0.73
CHD4-201ENST00000357008 PTPRSQ13332 1948 aa10.51□□□□□ -0.73
CHD4-201ENST00000357008 PSPHP1O15172 72 aa10.51□□□□□ -0.73
CHD4-201ENST00000357008 IGLV5-39A0A0G2JS06 123 aa10.51□□□□□ -0.73
CHD4-201ENST00000357008 A0A087WSZ3 146 aa10.5□□□□□ -0.73
CHD4-201ENST00000357008 Q9BRP9 147 aa10.5□□□□□ -0.73
CHD4-201ENST00000357008 IGHV6-1A0A0B4J1U7 121 aa10.49□□□□□ -0.73
CHD4-201ENST00000357008 H0Y9P7 68 aa10.49□□□□□ -0.73
CHD4-201ENST00000357008 IGF2RP11717 2491 aa10.48□□□□□ -0.73
CHD4-201ENST00000357008 SMCPP49901 116 aaPredicted RBP10.48□□□□□ -0.73
CHD4-201ENST00000357008 PCOTHQ58A44 107 aa10.47□□□□□ -0.73
CHD4-201ENST00000357008 A8MTW9 85 aa10.47□□□□□ -0.73
CHD4-201ENST00000357008 HCG22E2RYF7 251 aa10.47□□□□□ -0.73
CHD4-201ENST00000357008 CPAMD8Q8IZJ3 1885 aa10.46□□□□□ -0.73
CHD4-201ENST00000357008 hDV103S1A0JD37 113 aa10.46□□□□□ -0.73
CHD4-201ENST00000357008 NCOR2Q9Y618 2525 aa10.46□□□□□ -0.73
CHD4-201ENST00000357008 Q6ZTC4 211 aa10.46□□□□□ -0.73
CHD4-201ENST00000357008 A0A1W2PPR1 153 aa10.46□□□□□ -0.74
CHD4-201ENST00000357008 CRYGAP11844 174 aa10.46□□□□□ -0.74
CHD4-201ENST00000357008 TLN1Q9Y490 2541 aaKnown RBP10.45□□□□□ -0.74
CHD4-201ENST00000357008 RETNQ9HD89 108 aa10.45□□□□□ -0.74
CHD4-201ENST00000357008 PRO0461Q9UI25 63 aa10.45□□□□□ -0.74
CHD4-201ENST00000357008 C16orf95Q9H693 158 aa10.45□□□□□ -0.74
CHD4-201ENST00000357008 LINC00315P59091 139 aa10.44□□□□□ -0.74
CHD4-201ENST00000357008 LYPD5Q6UWN5 251 aa10.44□□□□□ -0.74
CHD4-201ENST00000357008 CIRBP-AS1Q8TBR5 109 aa10.44□□□□□ -0.74
CHD4-201ENST00000357008 BCE1O60756 84 aa10.43□□□□□ -0.74
CHD4-201ENST00000357008 C11orf72Q8NBR9 251 aa10.42□□□□□ -0.74
CHD4-201ENST00000357008 IGHV3OR16-9A0A0B4J2B5 98 aa10.42□□□□□ -0.74
CHD4-201ENST00000357008 Q6ZRU5 148 aa10.42□□□□□ -0.74
CHD4-201ENST00000357008 AGRNO00468 2067 aa10.42□□□□□ -0.74
CHD4-201ENST00000357008 RAI1Q7Z5J4 1906 aaPredicted RBP10.42□□□□□ -0.74
CHD4-201ENST00000357008 LY6G6CO95867 125 aa10.42□□□□□ -0.74
CHD4-201ENST00000357008 DEFB116Q30KQ4 102 aa10.42□□□□□ -0.74
CHD4-201ENST00000357008 Q8N2B8 174 aa10.42□□□□□ -0.74
CHD4-201ENST00000357008 PRO0628Q9UI54 55 aa10.41□□□□□ -0.74
CHD4-201ENST00000357008 PIEZO1Q92508 2521 aa10.41□□□□□ -0.74
CHD4-201ENST00000357008 KRTAP10-9P60411 292 aa10.41□□□□□ -0.74
CHD4-201ENST00000357008 FAM19A4Q96LR4 140 aa10.4□□□□□ -0.74
CHD4-201ENST00000357008 SPATA3Q8NHX4 192 aa10.4□□□□□ -0.75
CHD4-201ENST00000357008 COL5A1P20908 1838 aaPredicted RBP10.39□□□□□ -0.75
CHD4-201ENST00000357008 NUPR2A6NF83 97 aa10.39□□□□□ -0.75
CHD4-201ENST00000357008 IGLV5-45A0A087WSX0 123 aa10.39□□□□□ -0.75
CHD4-201ENST00000357008 EXPH5Q8NEV8 1989 aa10.38□□□□□ -0.75
CHD4-201ENST00000357008 RPS28P62857 69 aaKnown RBP10.38□□□□□ -0.75
CHD4-201ENST00000357008 SBSPONQ8IVN8 264 aa10.38□□□□□ -0.75
CHD4-201ENST00000357008 LIMD2Q9BT23 127 aa10.37□□□□□ -0.75
CHD4-201ENST00000357008 C1orf64Q8NEQ6 169 aa10.37□□□□□ -0.75
CHD4-201ENST00000357008 ADAMTS20P59510 1910 aa10.37□□□□□ -0.75
CHD4-201ENST00000357008 PLA2G2AP14555 144 aa10.37□□□□□ -0.75
CHD4-201ENST00000357008 LINC01556Q5JQF7 62 aa10.37□□□□□ -0.75
CHD4-201ENST00000357008 SMR3AQ99954 134 aa10.37□□□□□ -0.75
CHD4-201ENST00000357008 SMIM29Q86T20 159 aa10.36□□□□□ -0.75
CHD4-201ENST00000357008 KIAA0087Q14695 138 aa10.35□□□□□ -0.75
CHD4-201ENST00000357008 FAM218AQ96MZ4 157 aa10.35□□□□□ -0.75
CHD4-201ENST00000357008 C22orf24Q9Y442 160 aa10.34□□□□□ -0.75
CHD4-201ENST00000357008 PRLHP81277 87 aa10.34□□□□□ -0.75
CHD4-201ENST00000357008 SMCR5Q8TEV8 140 aa10.33□□□□□ -0.76
CHD4-201ENST00000357008 IGLV5-52A0A0A0MRZ9 124 aa10.33□□□□□ -0.76
CHD4-201ENST00000357008 RETNLBQ9BQ08 111 aa10.33□□□□□ -0.76
CHD4-201ENST00000357008 A0A1B0GW54 56 aa10.32□□□□□ -0.76
CHD4-201ENST00000357008 USP9XQ93008 2570 aaPredicted RBP10.32□□□□□ -0.76
CHD4-201ENST00000357008 ABCA12Q86UK0 2595 aa10.31□□□□□ -0.76
CHD4-201ENST00000357008 TET2Q6N021 2002 aaPredicted RBP10.31□□□□□ -0.76
CHD4-201ENST00000357008 SPINK1P00995 79 aa10.31□□□□□ -0.76
CHD4-201ENST00000357008 WDR87Q6ZQQ6 2873 aa10.3□□□□□ -0.76
CHD4-201ENST00000357008 JMJD1CQ15652 2540 aa10.29□□□□□ -0.76
CHD4-201ENST00000357008 FN1P02751 2386 aaKnown RBP10.29□□□□□ -0.76
CHD4-201ENST00000357008 TLN2Q9Y4G6 2542 aa10.28□□□□□ -0.76
CHD4-201ENST00000357008 Q6ZQT0 140 aa10.28□□□□□ -0.76
CHD4-201ENST00000357008 LOC110117498A0A087WWA1 95 aa10.27□□□□□ -0.76
CHD4-201ENST00000357008 Q9UF83 564 aa10.27□□□□□ -0.76
CHD4-201ENST00000357008 X6R8D5 127 aa10.27□□□□□ -0.76
CHD4-201ENST00000357008 TP53AIP1Q9HCN2 124 aa10.27□□□□□ -0.76
CHD4-201ENST00000357008 C4orf26Q17RF5 130 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 136.7 ms