RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 IGHV3-38A0A0C4DH36 116 aa4.73□□□□□ -1.65
VPS13A-201ENST00000355766 IGKV2-29A2NJV5 120 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-201ENST00000355766 LINC00587B1AMM8 73 aa4.73□□□□□ -1.65
VPS13A-201ENST00000355766 F5H768 121 aa4.73□□□□□ -1.65
VPS13A-201ENST00000355766 M0R143 59 aa4.73□□□□□ -1.65
VPS13A-201ENST00000355766 NMUP48645 174 aa4.73□□□□□ -1.65
VPS13A-201ENST00000355766 MAJINQ3KP22 176 aa4.73□□□□□ -1.65
VPS13A-201ENST00000355766 SFTA2Q6UW10 78 aa4.73□□□□□ -1.65
VPS13A-201ENST00000355766 Q6ZUT4 128 aa4.73□□□□□ -1.65
VPS13A-201ENST00000355766 LINC01561Q8N1V8 128 aa4.73□□□□□ -1.65
VPS13A-201ENST00000355766 STPG4Q8N801 248 aa4.73□□□□□ -1.65
VPS13A-201ENST00000355766 C15orf53Q8NAA6 179 aa4.73□□□□□ -1.65
VPS13A-201ENST00000355766 PLEKHB2Q96CS7 222 aa4.73□□□□□ -1.65
VPS13A-201ENST00000355766 LOC100131303A0A0U1RQF7 123 aa4.72□□□□□ -1.65
VPS13A-201ENST00000355766 TMEM223A0PJW6 202 aa4.72□□□□□ -1.65
VPS13A-201ENST00000355766 ZNF22P17026 224 aaPredicted RBP4.72□□□□□ -1.65
VPS13A-201ENST00000355766 TAL2Q16559 108 aa4.72□□□□□ -1.65
VPS13A-201ENST00000355766 C14orf144Q96I85 54 aa4.72□□□□□ -1.65
VPS13A-201ENST00000355766 CHCHD5Q9BSY4 110 aa4.72□□□□□ -1.65
VPS13A-201ENST00000355766 GEMIN7Q9H840 131 aaKnown RBP4.72□□□□□ -1.65
VPS13A-201ENST00000355766 VPS13BQ7Z7G8 4022 aa4.71□□□□□ -1.65
VPS13A-201ENST00000355766 FAT1Q14517 4588 aa4.71□□□□□ -1.66
VPS13A-201ENST00000355766 A0A096LPF7 62 aa4.71□□□□□ -1.66
VPS13A-201ENST00000355766 MYMXA0A1B0GTQ4 84 aa4.71□□□□□ -1.66
VPS13A-201ENST00000355766 LEPROTO15243 131 aa4.71□□□□□ -1.66
VPS13A-201ENST00000355766 HSD52Q0P140 79 aa4.71□□□□□ -1.66
VPS13A-201ENST00000355766 TMEM170BQ5T4T1 132 aa4.71□□□□□ -1.66
VPS13A-201ENST00000355766 IGKV2D-26A0A0A0MRZ7 120 aa4.7□□□□□ -1.66
VPS13A-201ENST00000355766 TRAV8-6A0A0B4J262 113 aa4.7□□□□□ -1.66
VPS13A-201ENST00000355766 IGHV1-58A0A0C4DH39 117 aa4.7□□□□□ -1.66
VPS13A-201ENST00000355766 IGLV5-39A0A0G2JS06 123 aa4.7□□□□□ -1.66
VPS13A-201ENST00000355766 A0A0J9YXV3 536 aa4.7□□□□□ -1.66
VPS13A-201ENST00000355766 J3QQQ9 107 aa4.7□□□□□ -1.66
VPS13A-201ENST00000355766 K7EP13 123 aa4.7□□□□□ -1.66
VPS13A-201ENST00000355766 LINC00242Q5T6M2 205 aa4.7□□□□□ -1.66
VPS13A-201ENST00000355766 C2orf91Q6ZV80 131 aa4.7□□□□□ -1.66
VPS13A-201ENST00000355766 C6orf223Q8N319 242 aa4.7□□□□□ -1.66
VPS13A-201ENST00000355766 LINC00469Q8N7U9 141 aa4.7□□□□□ -1.66
VPS13A-201ENST00000355766 OPRPNQ99935 248 aaPredicted RBP4.7□□□□□ -1.66
VPS13A-201ENST00000355766 PPDPFQ9H3Y8 114 aa4.7□□□□□ -1.66
VPS13A-201ENST00000355766 LGALS3P17931 250 aaKnown RBP4.69□□□□□ -1.66
VPS13A-201ENST00000355766 RBX1P62877 108 aa4.69□□□□□ -1.66
VPS13A-201ENST00000355766 Q5VSD8 79 aa4.69□□□□□ -1.66
VPS13A-201ENST00000355766 Q6ZVH6 145 aa4.69□□□□□ -1.66
VPS13A-201ENST00000355766 PCP2Q8IVA1 136 aa4.69□□□□□ -1.66
VPS13A-201ENST00000355766 SPANXB1Q9NS25 103 aaPredicted RBP4.69□□□□□ -1.66
VPS13A-201ENST00000355766 PRR34Q9NV39 138 aa4.69□□□□□ -1.66
VPS13A-201ENST00000355766 A0A087WZ39 114 aa4.68□□□□□ -1.66
VPS13A-201ENST00000355766 TRAV8-4A0A0B4J246 113 aa4.68□□□□□ -1.66
VPS13A-201ENST00000355766 A0A0J9YY99 117 aa4.68□□□□□ -1.66
VPS13A-201ENST00000355766 ZNF815PA8K554 130 aa4.68□□□□□ -1.66
VPS13A-201ENST00000355766 TIMM17BO60830 172 aa4.68□□□□□ -1.66
VPS13A-201ENST00000355766 CTAG1AP78358 180 aa4.68□□□□□ -1.66
VPS13A-201ENST00000355766 GAGE6Q13070 117 aa4.68□□□□□ -1.66
VPS13A-201ENST00000355766 MPV17L2Q567V2 206 aa4.68□□□□□ -1.66
VPS13A-201ENST00000355766 COL5A1-AS1Q5SY13 56 aa4.68□□□□□ -1.66
VPS13A-201ENST00000355766 LYPD5Q6UWN5 251 aa4.68□□□□□ -1.66
VPS13A-201ENST00000355766 MPLKIPQ8TAP9 179 aa4.68□□□□□ -1.66
VPS13A-201ENST00000355766 TM2D2Q9BX73 214 aa4.68□□□□□ -1.66
VPS13A-201ENST00000355766 TP73-AS1Q9UF72 201 aa4.68□□□□□ -1.66
VPS13A-201ENST00000355766 IGHV3OR16-9A0A0B4J2B5 98 aa4.67□□□□□ -1.66
VPS13A-201ENST00000355766 A0A0J9YXY3 114 aa4.67□□□□□ -1.66
VPS13A-201ENST00000355766 NBDYA0A0U1RRE5 68 aa4.67□□□□□ -1.66
VPS13A-201ENST00000355766 SMIM1B2RUZ4 78 aa4.67□□□□□ -1.66
VPS13A-201ENST00000355766 TMEM238C9JI98 176 aa4.67□□□□□ -1.66
VPS13A-201ENST00000355766 NDUFA1O15239 70 aa4.67□□□□□ -1.66
VPS13A-201ENST00000355766 IGHV3-30-3P0DP02 117 aa4.67□□□□□ -1.66
VPS13A-201ENST00000355766 HTN3P15516 51 aa4.67□□□□□ -1.66
VPS13A-201ENST00000355766 HERV-K104P63124 156 aa4.67□□□□□ -1.66
VPS13A-201ENST00000355766 SS18Q15532 418 aa4.67□□□□□ -1.66
VPS13A-201ENST00000355766 LINC01556Q5JQF7 62 aa4.67□□□□□ -1.66
VPS13A-201ENST00000355766 DEFB104AQ8WTQ1 72 aa4.67□□□□□ -1.66
VPS13A-201ENST00000355766 COPS9Q8WXC6 57 aa4.67□□□□□ -1.66
VPS13A-201ENST00000355766 UPK3BQ9BT76 320 aa4.67□□□□□ -1.66
VPS13A-201ENST00000355766 SNHG12Q9BXW3 62 aa4.67□□□□□ -1.66
VPS13A-201ENST00000355766 CDKN2A-AS1Q9UH64 79 aa4.67□□□□□ -1.66
VPS13A-201ENST00000355766 IGLV4-60A0A075B6I1 120 aa4.66□□□□□ -1.66
VPS13A-201ENST00000355766 TRAV13-1A0A0B4J241 112 aa4.66□□□□□ -1.66
VPS13A-201ENST00000355766 LINC00959A0A1B0GUT2 108 aa4.66□□□□□ -1.66
VPS13A-201ENST00000355766 A6NDN8 102 aa4.66□□□□□ -1.66
VPS13A-201ENST00000355766 TMEM262E9PQX1 116 aa4.66□□□□□ -1.66
VPS13A-201ENST00000355766 DNAH10OSP0CZ25 163 aa4.66□□□□□ -1.66
VPS13A-201ENST00000355766 CXCL5P42830 114 aa4.66□□□□□ -1.66
VPS13A-201ENST00000355766 MIAQ16674 131 aa4.66□□□□□ -1.66
VPS13A-201ENST00000355766 BVES-AS1Q5T3Y7 98 aa4.66□□□□□ -1.66
VPS13A-201ENST00000355766 CD164L2Q6UWJ8 174 aa4.66□□□□□ -1.66
VPS13A-201ENST00000355766 SCGB1D4Q6XE38 83 aa4.66□□□□□ -1.66
VPS13A-201ENST00000355766 TSPEAR-AS2P59090 65 aa4.65□□□□□ -1.67
VPS13A-201ENST00000355766 REG3AQ06141 175 aa4.65□□□□□ -1.67
VPS13A-201ENST00000355766 RNASE13Q5GAN3 156 aaKnown RBP4.65□□□□□ -1.67
VPS13A-201ENST00000355766 C10orf126Q8N4M7 172 aa4.65□□□□□ -1.67
VPS13A-201ENST00000355766 ORAOV1Q8WV07 137 aa4.65□□□□□ -1.67
VPS13A-201ENST00000355766 NDUFA12Q9UI09 145 aa4.65□□□□□ -1.67
VPS13A-201ENST00000355766 SRRM2Q9UQ35 2752 aaKnown RBP4.65□□□□□ -1.67
VPS13A-201ENST00000355766 F8WDY8 70 aa4.64□□□□□ -1.67
VPS13A-201ENST00000355766 CRPP02741 224 aa4.64□□□□□ -1.67
VPS13A-201ENST00000355766 ANGP03950 147 aaKnown RBP4.64□□□□□ -1.67
VPS13A-201ENST00000355766 IFITM1P13164 125 aa4.64□□□□□ -1.67
VPS13A-201ENST00000355766 CCL18P55774 89 aa4.64□□□□□ -1.67
VPS13A-201ENST00000355766 XGP55808 180 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms