RNA–Protein interactions for RNA: ENST00000342503.8

RTN1-202, Transcript of reticulon 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene RTN1, Length 1,703 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN1-202ENST00000342503 C6orf226Q5I0X4 101 aa13.56□□□□□ -0.24
RTN1-202ENST00000342503 GAGE12HA6NDE8 117 aa13.56□□□□□ -0.24
RTN1-202ENST00000342503 Q8IZM0 81 aa13.56□□□□□ -0.24
RTN1-202ENST00000342503 SOSTDC1Q6X4U4 206 aa13.54□□□□□ -0.24
RTN1-202ENST00000342503 MGAM2Q2M2H8 2515 aa13.54□□□□□ -0.24
RTN1-202ENST00000342503 MALP21145 153 aa13.53□□□□□ -0.24
RTN1-202ENST00000342503 SFTA2Q6UW10 78 aa13.53□□□□□ -0.24
RTN1-202ENST00000342503 CRPP02741 224 aa13.53□□□□□ -0.24
RTN1-202ENST00000342503 UBE2WQ96B02 151 aa13.53□□□□□ -0.24
RTN1-202ENST00000342503 ERG28Q9UKR5 140 aa13.53□□□□□ -0.24
RTN1-202ENST00000342503 COPS9Q8WXC6 57 aa13.52□□□□□ -0.25
RTN1-202ENST00000342503 LOC107984156A0A0G2JMH3 177 aa13.51□□□□□ -0.25
RTN1-202ENST00000342503 H7C2G1 150 aa13.51□□□□□ -0.25
RTN1-202ENST00000342503 KIAA0087Q14695 138 aa13.51□□□□□ -0.25
RTN1-202ENST00000342503 ARL17AQ8IVW1 177 aa13.51□□□□□ -0.25
RTN1-202ENST00000342503 C15orf53Q8NAA6 179 aa13.51□□□□□ -0.25
RTN1-202ENST00000342503 IBA57-AS1B1ANH7 110 aa13.5□□□□□ -0.25
RTN1-202ENST00000342503 LINC00158P58513 81 aa13.5□□□□□ -0.25
RTN1-202ENST00000342503 C2orf82Q6UX34 121 aa13.5□□□□□ -0.25
RTN1-202ENST00000342503 MIR7-3HGQ8N6C7 128 aa13.5□□□□□ -0.25
RTN1-202ENST00000342503 TRAV8-4A0A0B4J246 113 aa13.49□□□□□ -0.25
RTN1-202ENST00000342503 CFAP161Q6P656 301 aa13.49□□□□□ -0.25
RTN1-202ENST00000342503 CKS1BP61024 79 aa13.48□□□□□ -0.25
RTN1-202ENST00000342503 PFN2P35080 140 aa13.47□□□□□ -0.25
RTN1-202ENST00000342503 Q1RN00 199 aa13.47□□□□□ -0.25
RTN1-202ENST00000342503 LINC01556Q5JQF7 62 aa13.47□□□□□ -0.25
RTN1-202ENST00000342503 PPDPFQ9H3Y8 114 aa13.47□□□□□ -0.25
RTN1-202ENST00000342503 DNAH9Q9NYC9 4486 aa13.47□□□□□ -0.25
RTN1-202ENST00000342503 B9D2Q9BPU9 175 aa13.47□□□□□ -0.25
RTN1-202ENST00000342503 KLK5Q9Y337 293 aaPredicted RBP13.47□□□□□ -0.25
RTN1-202ENST00000342503 CXCL5P42830 114 aa13.46□□□□□ -0.25
RTN1-202ENST00000342503 H3BMG7 143 aa13.45□□□□□ -0.26
RTN1-202ENST00000342503 PSMB2P49721 201 aa13.45□□□□□ -0.26
RTN1-202ENST00000342503 LYRM7Q5U5X0 104 aa13.45□□□□□ -0.26
RTN1-202ENST00000342503 SCGB1C2P0DMR2 95 aa13.44□□□□□ -0.26
RTN1-202ENST00000342503 RPL13AP40429 203 aaKnown RBP13.44□□□□□ -0.26
RTN1-202ENST00000342503 SPAG11BQ08648 103 aa13.44□□□□□ -0.26
RTN1-202ENST00000342503 LINC00588Q9Y4M8 146 aa13.44□□□□□ -0.26
RTN1-202ENST00000342503 KRTAP26-1Q6PEX3 210 aa13.42□□□□□ -0.26
RTN1-202ENST00000342503 TCL1BO95988 128 aa13.42□□□□□ -0.26
RTN1-202ENST00000342503 DNAH10OSP0CZ25 163 aa13.42□□□□□ -0.26
RTN1-202ENST00000342503 CCL18P55774 89 aa13.42□□□□□ -0.26
RTN1-202ENST00000342503 C6orf223Q8N319 242 aa13.42□□□□□ -0.26
RTN1-202ENST00000342503 TRBV30A0A0K0K1B3 111 aa13.4□□□□□ -0.26
RTN1-202ENST00000342503 TRIAP1O43715 76 aa13.4□□□□□ -0.26
RTN1-202ENST00000342503 LINC00526Q96FQ7 95 aa13.4□□□□□ -0.26
RTN1-202ENST00000342503 SND1-IT1Q9HBX3 110 aa13.4□□□□□ -0.26
RTN1-202ENST00000342503 TRBV20-1A0A075B6N2 111 aa13.39□□□□□ -0.27
RTN1-202ENST00000342503 C9orf116Q5BN46 136 aaPredicted RBP13.38□□□□□ -0.27
RTN1-202ENST00000342503 C10orf25Q5T742 122 aa13.38□□□□□ -0.27
RTN1-202ENST00000342503 UNQ6190/PRO20217Q6UXQ8 127 aa13.38□□□□□ -0.27
RTN1-202ENST00000342503 COX17Q14061 63 aa13.37□□□□□ -0.27
RTN1-202ENST00000342503 C1orf43Q9BWL3 253 aa13.37□□□□□ -0.27
RTN1-202ENST00000342503 COL7A1Q02388 2944 aa13.36□□□□□ -0.27
RTN1-202ENST00000342503 F8W1H4 67 aa13.36□□□□□ -0.27
RTN1-202ENST00000342503 MTURNQ8N3F0 131 aa13.36□□□□□ -0.27
RTN1-202ENST00000342503 PRO0461Q9UI25 63 aa13.36□□□□□ -0.27
RTN1-202ENST00000342503 IGKV2-28A0A075B6P5 120 aa13.35□□□□□ -0.27
RTN1-202ENST00000342503 IGKV2D-24A0A075B6R9 120 aa13.35□□□□□ -0.27
RTN1-202ENST00000342503 IGKV2D-28P01615 120 aa13.35□□□□□ -0.27
RTN1-202ENST00000342503 NTN5Q8WTR8 489 aaPredicted RBP13.35□□□□□ -0.27
RTN1-202ENST00000342503 WFDC2Q14508 124 aa13.34□□□□□ -0.27
RTN1-202ENST00000342503 TRAV13-2A0A0B4J235 113 aa13.33□□□□□ -0.28
RTN1-202ENST00000342503 HIGD2BQ4VC39 106 aa13.33□□□□□ -0.28
RTN1-202ENST00000342503 LINC00337Q8N6G1 96 aa13.33□□□□□ -0.28
RTN1-202ENST00000342503 Q9HAA7 133 aa13.33□□□□□ -0.28
RTN1-202ENST00000342503 COX6CP09669 75 aa13.32□□□□□ -0.28
RTN1-202ENST00000342503 C15orf56Q8N910 161 aa13.32□□□□□ -0.28
RTN1-202ENST00000342503 UPK3BQ9BT76 320 aa13.32□□□□□ -0.28
RTN1-202ENST00000342503 NHLRC4P0CG21 123 aaPredicted RBP13.31□□□□□ -0.28
RTN1-202ENST00000342503 ZNF561-AS1K7EIQ3 104 aa13.3□□□□□ -0.28
RTN1-202ENST00000342503 GVQW2A0A096LPI5 108 aaPredicted RBP13.3□□□□□ -0.28
RTN1-202ENST00000342503 ATXN8Q156A1 80 aa13.3□□□□□ -0.28
RTN1-202ENST00000342503 C6orf48Q9UBA6 75 aa13.3□□□□□ -0.28
RTN1-202ENST00000342503 SMCPP49901 116 aaPredicted RBP13.29□□□□□ -0.28
RTN1-202ENST00000342503 DYNC2H1Q8NCM8 4307 aaKnown RBP13.29□□□□□ -0.28
RTN1-202ENST00000342503 OCIAD2Q56VL3 154 aa13.28□□□□□ -0.28
RTN1-202ENST00000342503 CLEC2BQ92478 149 aa13.27□□□□□ -0.28
RTN1-202ENST00000342503 APLNQ9ULZ1 77 aa13.27□□□□□ -0.28
RTN1-202ENST00000342503 CAMK2N2Q96S95 79 aa13.27□□□□□ -0.29
RTN1-202ENST00000342503 MUC7Q8TAX7 377 aa13.26□□□□□ -0.29
RTN1-202ENST00000342503 DNAH1Q9P2D7 4330 aa13.25□□□□□ -0.29
RTN1-202ENST00000342503 LINC01620Q4KN68 170 aa13.25□□□□□ -0.29
RTN1-202ENST00000342503 C2orf48Q96LS8 159 aa13.25□□□□□ -0.29
RTN1-202ENST00000342503 C9JAW5 83 aa13.24□□□□□ -0.29
RTN1-202ENST00000342503 NDUFC2O95298 119 aa13.24□□□□□ -0.29
RTN1-202ENST00000342503 RPL28P46779 137 aaKnown RBP13.24□□□□□ -0.29
RTN1-202ENST00000342503 ETDBQ3ZM63 59 aa13.24□□□□□ -0.29
RTN1-202ENST00000342503 DNHD1Q96M86 4753 aa13.23□□□□□ -0.29
RTN1-202ENST00000342503 LST1O00453 97 aa13.23□□□□□ -0.29
RTN1-202ENST00000342503 PRR3P79522 188 aaKnown RBP13.23□□□□□ -0.29
RTN1-202ENST00000342503 Q6ZRU5 148 aa13.23□□□□□ -0.29
RTN1-202ENST00000342503 OR13C6PQ8NH95 151 aa13.23□□□□□ -0.29
RTN1-202ENST00000342503 STAB2Q8WWQ8 2551 aa13.23□□□□□ -0.29
RTN1-202ENST00000342503 Q8NDZ9 215 aa13.22□□□□□ -0.29
RTN1-202ENST00000342503 SMIM11BQ8TCY0 68 aa13.22□□□□□ -0.29
RTN1-202ENST00000342503 SLC25A20O43772 301 aa13.21□□□□□ -0.3
RTN1-202ENST00000342503 RMI2Q96E14 147 aa13.21□□□□□ -0.3
RTN1-202ENST00000342503 CASC10Q5T4H9 136 aa13.2□□□□□ -0.3
RTN1-202ENST00000342503 UBE2DNLQ8IWF7 75 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms