RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 Q86TA4 180 aa0.82□□□□□ -2.28
LINC00643-201ENST00000334389 Q8N377 158 aa0.82□□□□□ -2.28
LINC00643-201ENST00000334389 EPDR1Q9UM22 224 aa0.82□□□□□ -2.28
LINC00643-201ENST00000334389 LSM5Q9Y4Y9 91 aaKnown RBP0.82□□□□□ -2.28
LINC00643-201ENST00000334389 TRBV27A0A0K0K1C4 114 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 FABP5P3A8MUU1 101 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 H0YAA0 97 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 ZNF861PO60384 105 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 TSHBP01222 138 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 GCHFRP30047 84 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 CSN1S1P47710 185 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 RPL23P62829 140 aaKnown RBP0.81□□□□□ -2.28
LINC00643-201ENST00000334389 ZNF90Q03938 601 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 DEFB136Q30KP8 78 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 Q56UQ5 140 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 Q6ZUT4 128 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 LYZL2Q7Z4W2 148 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 C11orf44Q8N8P7 122 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 PCNPQ8WW12 178 aaKnown RBP0.81□□□□□ -2.28
LINC00643-201ENST00000334389 RAB37Q96AX2 223 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 MRPL36Q9P0J6 103 aaKnown RBP0.81□□□□□ -2.28
LINC00643-201ENST00000334389 URGCP-MRPS24S4R325 110 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 SMIM26A0A096LP01 95 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 IGHV3-43A0A0B4J1X8 118 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 IGHV1-58A0A0C4DH39 117 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 GRIFINA4D1Z8 144 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 PGPA6NDG6 321 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 CEBPZOSA8MTT3 80 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 PRAC2D3DTV9 90 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP0.81□□□□□ -2.28
LINC00643-201ENST00000334389 J3KT08 172 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 TRBV12-3P01733 135 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 IGHV3-43DP0DP04 118 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 DEFA4P12838 97 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 RPL12P30050 165 aaKnown RBP0.81□□□□□ -2.28
LINC00643-201ENST00000334389 AKR1C2P52895 323 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 MEF2BQ02080 365 aaPredicted RBP0.81□□□□□ -2.28
LINC00643-201ENST00000334389 ERCC8Q13216 396 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 INSL4Q14641 139 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 ZNF726P1Q15940 193 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 MAJINQ3KP22 176 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 GTF2H5Q6ZYL4 71 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 RFESDQ8TAC1 157 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 ZNF625Q96I27 306 aaPredicted RBP0.81□□□□□ -2.28
LINC00643-201ENST00000334389 DUX3Q96PT4 197 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 KRTAP4-1Q9BYQ7 146 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 V9GYV3 84 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 A0A0B4J2C4 111 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 H3BQ85 93 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 UQCRQO14949 82 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 TIMM17BO60830 172 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 HLA-DQA1P01909 254 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 IL4P05112 153 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 NTF3P20783 257 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 ARL16Q0P5N6 197 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 COX17Q14061 63 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 SP6Q3SY56 376 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 SCGB2B2Q4G0G5 96 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 PYDC2Q56P42 97 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 TMEM170BQ5T4T1 132 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 GFI1BQ5VTD9 330 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 ATP5EP2Q5VTU8 51 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 LINC00305Q7Z4B0 112 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 DAND5Q8N907 189 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 Q8N9P0 234 aaPredicted RBP0.81□□□□□ -2.28
LINC00643-201ENST00000334389 PPDPFLQ8WWR9 84 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 MED12Q93074 2177 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 PRADC1Q9BSG0 188 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 COMMD3Q9UBI1 195 aa0.81□□□□□ -2.28
LINC00643-201ENST00000334389 TRBV20-1A0A075B6N2 111 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 A0A096LNJ9 63 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 H3BT86 120 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 PEX7O00628 323 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 PAGE4O60829 102 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 PRSS1P07477 247 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 RNASE3P12724 160 aaKnown RBP0.8□□□□□ -2.28
LINC00643-201ENST00000334389 AZU1P20160 251 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 CDC34P49427 236 aaPredicted RBP0.8□□□□□ -2.28
LINC00643-201ENST00000334389 POLR2KP53803 58 aaKnown RBP0.8□□□□□ -2.28
LINC00643-201ENST00000334389 KRTAP10-10P60014 251 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 CKS1BP61024 79 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 KLKP1Q107X0 134 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 LRRC37A5PQ49AS3 106 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 LCE1FQ5T754 118 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 SCGB1C1Q8TD33 95 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 IL1F10Q8WWZ1 152 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 BORCS7Q96B45 105 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 C20orf166-AS1Q96NR2 134 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 TIMM17AQ99595 171 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 ZNF355PQ9NSJ1 428 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 IGHV3-21A0A0B4J1V1 117 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 IGHV3-38A0A0C4DH36 116 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 MUC21A0A0G2JKD1 596 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 IGHV3-64DA0A0J9YX35 117 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 MUC21A0A140T8X8 626 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 ZNF705GA8MUZ8 300 aaPredicted RBP0.8□□□□□ -2.28
LINC00643-201ENST00000334389 NDUFC2O95298 119 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 APOC3P02656 99 aa0.8□□□□□ -2.28
LINC00643-201ENST00000334389 NDUFV3P56181 108 aaKnown RBP0.8□□□□□ -2.28
LINC00643-201ENST00000334389 DEFB131AP59861 70 aa0.8□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms