RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 Q6ZR54 194 aa11.06□□□□□ -0.64
SHOX-201ENST00000334060 LINC01600Q96MT4 127 aa11.06□□□□□ -0.64
SHOX-201ENST00000334060 TRAV13-1A0A0B4J241 112 aa11.05□□□□□ -0.64
SHOX-201ENST00000334060 DGAT2L7PQ6IED9 249 aa11.05□□□□□ -0.64
SHOX-201ENST00000334060 H7C423 109 aa11.05□□□□□ -0.64
SHOX-201ENST00000334060 MT-ATP8P03928 68 aa11.05□□□□□ -0.64
SHOX-201ENST00000334060 XGP55808 180 aa11.05□□□□□ -0.64
SHOX-201ENST00000334060 DNAH17Q9UFH2 4485 aa11.04□□□□□ -0.64
SHOX-201ENST00000334060 TIMM21Q9BVV7 248 aa11.04□□□□□ -0.64
SHOX-201ENST00000334060 TTTY13Q9BZ97 58 aa11.04□□□□□ -0.64
SHOX-201ENST00000334060 PRR34Q9NV39 138 aa11.04□□□□□ -0.64
SHOX-201ENST00000334060 PYGO1Q9Y3Y4 419 aa11.04□□□□□ -0.64
SHOX-201ENST00000334060 FAT2Q9NYQ8 4349 aa11.04□□□□□ -0.64
SHOX-201ENST00000334060 SMCPP49901 116 aaPredicted RBP11.03□□□□□ -0.64
SHOX-201ENST00000334060 HERVK_113P61574 105 aa11.03□□□□□ -0.64
SHOX-201ENST00000334060 TMEM141Q96I45 108 aa11.03□□□□□ -0.64
SHOX-201ENST00000334060 TMEM101Q96IK0 257 aa11.03□□□□□ -0.64
SHOX-201ENST00000334060 TIMM17AQ99595 171 aa11.03□□□□□ -0.64
SHOX-201ENST00000334060 CSDC2Q9Y534 153 aaKnown RBP11.03□□□□□ -0.64
SHOX-201ENST00000334060 IBA57-AS1B1ANH7 110 aa11.03□□□□□ -0.64
SHOX-201ENST00000334060 SCGB1C2P0DMR2 95 aa11.03□□□□□ -0.64
SHOX-201ENST00000334060 PSMB2P49721 201 aa11.03□□□□□ -0.64
SHOX-201ENST00000334060 NFE4Q86UQ8 179 aa11.03□□□□□ -0.64
SHOX-201ENST00000334060 AMELXQ99217 191 aa11.03□□□□□ -0.64
SHOX-201ENST00000334060 COX6A2Q02221 97 aa11.02□□□□□ -0.65
SHOX-201ENST00000334060 LINC00959A0A1B0GUT2 108 aa11.01□□□□□ -0.65
SHOX-201ENST00000334060 MRPS36P82909 103 aaKnown RBP11.01□□□□□ -0.65
SHOX-201ENST00000334060 GAGE2BQ13066 116 aa11.01□□□□□ -0.65
SHOX-201ENST00000334060 SRSF9Q13242 221 aaKnown RBP eCLIP11.01□□□□□ -0.65
SHOX-201ENST00000334060 GAGE2EQ4V326 116 aa11.01□□□□□ -0.65
SHOX-201ENST00000334060 KRTAP26-1Q6PEX3 210 aa11.01□□□□□ -0.65
SHOX-201ENST00000334060 GAGE2DQ9UEU5 116 aa11.01□□□□□ -0.65
SHOX-201ENST00000334060 LOC107984156A0A0G2JMH3 177 aa11□□□□□ -0.65
SHOX-201ENST00000334060 A0A0J9YXV3 536 aa11□□□□□ -0.65
SHOX-201ENST00000334060 XCL1P47992 114 aa11□□□□□ -0.65
SHOX-201ENST00000334060 ARL17AQ8IVW1 177 aa11□□□□□ -0.65
SHOX-201ENST00000334060 SNCGO76070 127 aa10.99□□□□□ -0.65
SHOX-201ENST00000334060 SCGB1D4Q6XE38 83 aa10.99□□□□□ -0.65
SHOX-201ENST00000334060 Q6ZRN7 208 aaPredicted RBP10.99□□□□□ -0.65
SHOX-201ENST00000334060 ZNF815PA8K554 130 aa10.99□□□□□ -0.65
SHOX-201ENST00000334060 CARD19Q96LW7 228 aa10.99□□□□□ -0.65
SHOX-201ENST00000334060 IGLV4-69A0A075B6H9 119 aa10.98□□□□□ -0.65
SHOX-201ENST00000334060 IGKV2D-24A0A075B6R9 120 aa10.98□□□□□ -0.65
SHOX-201ENST00000334060 LECT2O14960 151 aa10.98□□□□□ -0.65
SHOX-201ENST00000334060 CRPP02741 224 aa10.98□□□□□ -0.65
SHOX-201ENST00000334060 LINC00242Q5T6M2 205 aa10.98□□□□□ -0.65
SHOX-201ENST00000334060 CHCHD10Q8WYQ3 142 aaPredicted RBP10.98□□□□□ -0.65
SHOX-201ENST00000334060 TTC32Q5I0X7 151 aa10.97□□□□□ -0.65
SHOX-201ENST00000334060 C10orf126Q8N4M7 172 aa10.97□□□□□ -0.65
SHOX-201ENST00000334060 DNAH11Q96DT5 4516 aa10.97□□□□□ -0.65
SHOX-201ENST00000334060 IFITM1P13164 125 aa10.97□□□□□ -0.65
SHOX-201ENST00000334060 FUSP35637 526 aaKnown RBP eCLIP10.96□□□□□ -0.65
SHOX-201ENST00000334060 NDUFV3P56181 108 aaKnown RBP10.96□□□□□ -0.65
SHOX-201ENST00000334060 SPANXCQ9NY87 97 aa10.96□□□□□ -0.65
SHOX-201ENST00000334060 RTL8CO15255 209 aa10.96□□□□□ -0.66
SHOX-201ENST00000334060 PMVKQ15126 192 aa10.96□□□□□ -0.66
SHOX-201ENST00000334060 PRO1854Q9UHT4 67 aa10.96□□□□□ -0.66
SHOX-201ENST00000334060 RPL13AP40429 203 aaKnown RBP10.95□□□□□ -0.66
SHOX-201ENST00000334060 C5orf38Q86SI9 138 aa10.94□□□□□ -0.66
SHOX-201ENST00000334060 C11orf86A6NJI1 115 aa10.94□□□□□ -0.66
SHOX-201ENST00000334060 ANKRD29Q8N6D5 301 aa10.94□□□□□ -0.66
SHOX-201ENST00000334060 TMEM126AQ9H061 195 aa10.94□□□□□ -0.66
SHOX-201ENST00000334060 SS18L2Q9UHA2 77 aa10.94□□□□□ -0.66
SHOX-201ENST00000334060 SLC25A20O43772 301 aa10.93□□□□□ -0.66
SHOX-201ENST00000334060 TCL1BO95988 128 aa10.93□□□□□ -0.66
SHOX-201ENST00000334060 MIAQ16674 131 aa10.93□□□□□ -0.66
SHOX-201ENST00000334060 C6orf223Q8N319 242 aa10.93□□□□□ -0.66
SHOX-201ENST00000334060 LINC00526Q96FQ7 95 aa10.93□□□□□ -0.66
SHOX-201ENST00000334060 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.92□□□□□ -0.66
SHOX-201ENST00000334060 C1orf43Q9BWL3 253 aa10.92□□□□□ -0.66
SHOX-201ENST00000334060 CDKN2A-AS1Q9UH64 79 aa10.92□□□□□ -0.66
SHOX-201ENST00000334060 A0A0B4J2C4 111 aa10.92□□□□□ -0.66
SHOX-201ENST00000334060 B5MCH6 92 aa10.92□□□□□ -0.66
SHOX-201ENST00000334060 PKD1P98161 4303 aa10.92□□□□□ -0.66
SHOX-201ENST00000334060 TRAV8-3A0A0A6YYJ7 113 aa10.91□□□□□ -0.66
SHOX-201ENST00000334060 IGHV3OR16-9A0A0B4J2B5 98 aa10.91□□□□□ -0.66
SHOX-201ENST00000334060 ATXN8Q156A1 80 aa10.91□□□□□ -0.66
SHOX-201ENST00000334060 FAM240AA0A1B0GVK7 77 aa10.9□□□□□ -0.66
SHOX-201ENST00000334060 TNP2Q05952 138 aa10.9□□□□□ -0.66
SHOX-201ENST00000334060 SS18Q15532 418 aa10.9□□□□□ -0.66
SHOX-201ENST00000334060 C1orf134Q5TEV5 83 aa10.9□□□□□ -0.66
SHOX-201ENST00000334060 IGHV3-64A0A075B6Q5 118 aa10.9□□□□□ -0.66
SHOX-201ENST00000334060 CFC1BP0CG36 223 aa10.89□□□□□ -0.67
SHOX-201ENST00000334060 CFC1P0CG37 223 aa10.89□□□□□ -0.67
SHOX-201ENST00000334060 ZNF22P17026 224 aaPredicted RBP10.88□□□□□ -0.67
SHOX-201ENST00000334060 CD164L2Q6UWJ8 174 aa10.88□□□□□ -0.67
SHOX-201ENST00000334060 C15orf56Q8N910 161 aa10.88□□□□□ -0.67
SHOX-201ENST00000334060 TRAV8-4A0A0B4J246 113 aa10.87□□□□□ -0.67
SHOX-201ENST00000334060 LRCOL1A6NCL2 159 aa10.87□□□□□ -0.67
SHOX-201ENST00000334060 HIGD2BQ4VC39 106 aa10.87□□□□□ -0.67
SHOX-201ENST00000334060 FAM19A3Q7Z5A8 133 aa10.87□□□□□ -0.67
SHOX-201ENST00000334060 DNAH5Q8TE73 4624 aa10.87□□□□□ -0.67
SHOX-201ENST00000334060 TRBV10-2A0A0K0K1G8 114 aa10.86□□□□□ -0.67
SHOX-201ENST00000334060 TINCRA0A1B0GVN0 87 aa10.86□□□□□ -0.67
SHOX-201ENST00000334060 IMUPQ9GZP8 106 aa10.86□□□□□ -0.67
SHOX-201ENST00000334060 HECTD4Q9Y4D8 3996 aa10.85□□□□□ -0.67
SHOX-201ENST00000334060 H3BT86 120 aa10.85□□□□□ -0.67
SHOX-201ENST00000334060 PSCAO43653 123 aa10.85□□□□□ -0.67
SHOX-201ENST00000334060 TRBV30A0A0K0K1B3 111 aa10.85□□□□□ -0.67
SHOX-201ENST00000334060 C9JAW5 83 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms