RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 SS18Q15532 418 aa13.23□□□□□ -0.29
RTN4-201ENST00000317610 TLN2Q9Y4G6 2542 aa13.23□□□□□ -0.29
RTN4-201ENST00000317610 ZNF469Q96JG9 3925 aaPredicted RBP13.23□□□□□ -0.29
RTN4-201ENST00000317610 ABCA12Q86UK0 2595 aa13.22□□□□□ -0.29
RTN4-201ENST00000317610 UBR5O95071 2799 aaPredicted RBP13.22□□□□□ -0.29
RTN4-201ENST00000317610 A0A1B0GX51 115 aa13.22□□□□□ -0.29
RTN4-201ENST00000317610 SLPIP03973 132 aa13.21□□□□□ -0.29
RTN4-201ENST00000317610 XCL1P47992 114 aa13.21□□□□□ -0.29
RTN4-201ENST00000317610 C11orf68Q9H3H3 251 aaKnown RBP13.21□□□□□ -0.29
RTN4-201ENST00000317610 CRYGAP11844 174 aa13.21□□□□□ -0.3
RTN4-201ENST00000317610 RPL18AQ02543 176 aaKnown RBP13.21□□□□□ -0.3
RTN4-201ENST00000317610 JMJD1CQ15652 2540 aa13.2□□□□□ -0.3
RTN4-201ENST00000317610 NBPF19A0A087WUL8 3843 aa13.2□□□□□ -0.3
RTN4-201ENST00000317610 ZNF462Q96JM2 2506 aa13.2□□□□□ -0.3
RTN4-201ENST00000317610 GYPEP15421 78 aa13.19□□□□□ -0.3
RTN4-201ENST00000317610 NANOS2P60321 138 aaKnown RBP13.19□□□□□ -0.3
RTN4-201ENST00000317610 BBC3Q96PG8 261 aaPredicted RBP13.19□□□□□ -0.3
RTN4-201ENST00000317610 RNASE1P07998 156 aaKnown RBP13.18□□□□□ -0.3
RTN4-201ENST00000317610 DEFB130BP0DP73 79 aa13.18□□□□□ -0.3
RTN4-201ENST00000317610 DEFB130AP0DP74 79 aa13.18□□□□□ -0.3
RTN4-201ENST00000317610 WFDC11Q8NEX6 87 aa13.18□□□□□ -0.3
RTN4-201ENST00000317610 IGKV3D-7A0A0C4DH55 119 aa13.18□□□□□ -0.3
RTN4-201ENST00000317610 NDUFC2O95298 119 aa13.18□□□□□ -0.3
RTN4-201ENST00000317610 CCKP06307 115 aa13.17□□□□□ -0.3
RTN4-201ENST00000317610 SONP18583 2426 aaKnown RBP13.16□□□□□ -0.3
RTN4-201ENST00000317610 ITPR3Q14573 2671 aa13.16□□□□□ -0.3
RTN4-201ENST00000317610 COX17Q14061 63 aa13.15□□□□□ -0.3
RTN4-201ENST00000317610 KIAA0087Q14695 138 aa13.15□□□□□ -0.3
RTN4-201ENST00000317610 ZNF843Q8N446 348 aa13.15□□□□□ -0.3
RTN4-201ENST00000317610 Q8N814 137 aa13.15□□□□□ -0.3
RTN4-201ENST00000317610 JMJD7-PLA2G4BH0Y9G9 81 aa13.14□□□□□ -0.31
RTN4-201ENST00000317610 NF1P21359 2839 aa13.14□□□□□ -0.31
RTN4-201ENST00000317610 PRO0255Q9UI72 69 aa13.13□□□□□ -0.31
RTN4-201ENST00000317610 CLPSL2Q6UWE3 100 aa13.12□□□□□ -0.31
RTN4-201ENST00000317610 IGHV4-28A0A0C4DH34 117 aa13.12□□□□□ -0.31
RTN4-201ENST00000317610 PRR3P79522 188 aaKnown RBP13.12□□□□□ -0.31
RTN4-201ENST00000317610 CD164L2Q6UWJ8 174 aa13.12□□□□□ -0.31
RTN4-201ENST00000317610 APCP25054 2843 aa13.11□□□□□ -0.31
RTN4-201ENST00000317610 TMEM256-PLSCR3K7ERE1 68 aa13.11□□□□□ -0.31
RTN4-201ENST00000317610 KRTAP1-1Q07627 177 aa13.11□□□□□ -0.31
RTN4-201ENST00000317610 X6R8D5 127 aa13.11□□□□□ -0.31
RTN4-201ENST00000317610 NIPBLQ6KC79 2804 aaeCLIP13.11□□□□□ -0.311e-6■■■□□ 18.2
RTN4-201ENST00000317610 A0A087WVE0 104 aa13.11□□□□□ -0.31
RTN4-201ENST00000317610 SERP2Q8N6R1 65 aa13.11□□□□□ -0.31
RTN4-201ENST00000317610 S100A7L2Q5SY68 101 aa13.1□□□□□ -0.31
RTN4-201ENST00000317610 SMIM9A6NGZ8 99 aa13.09□□□□□ -0.31
RTN4-201ENST00000317610 hADV29S1A0JD25 119 aa13.08□□□□□ -0.31
RTN4-201ENST00000317610 USP17L23D6RBM5 183 aa13.08□□□□□ -0.31
RTN4-201ENST00000317610 CFAP161Q6P656 301 aa13.08□□□□□ -0.31
RTN4-201ENST00000317610 CUBNO60494 3623 aa13.08□□□□□ -0.32
RTN4-201ENST00000317610 ATP5EP2Q5VTU8 51 aa13.08□□□□□ -0.32
RTN4-201ENST00000317610 UPK3BQ9BT76 320 aa13.08□□□□□ -0.32
RTN4-201ENST00000317610 ZFYVE26Q68DK2 2539 aa13.08□□□□□ -0.32
RTN4-201ENST00000317610 LINC00269Q8N2A0 174 aa13.07□□□□□ -0.32
RTN4-201ENST00000317610 CHCHD10Q8WYQ3 142 aaPredicted RBP13.07□□□□□ -0.32
RTN4-201ENST00000317610 USP24Q9UPU5 2620 aa13.07□□□□□ -0.32
RTN4-201ENST00000317610 LYPD5Q6UWN5 251 aa13.07□□□□□ -0.32
RTN4-201ENST00000317610 ANK3Q12955 4377 aaKnown RBP13.06□□□□□ -0.32
RTN4-201ENST00000317610 A0A096LPF7 62 aa13.06□□□□□ -0.32
RTN4-201ENST00000317610 CYSTM1Q9H1C7 97 aa13.06□□□□□ -0.32
RTN4-201ENST00000317610 Q8NDZ9 215 aa13.04□□□□□ -0.32
RTN4-201ENST00000317610 LYRM9A8MSI8 78 aa13.04□□□□□ -0.32
RTN4-201ENST00000317610 J3KT08 172 aa13.04□□□□□ -0.32
RTN4-201ENST00000317610 FLNAP21333 2647 aaKnown RBP13.03□□□□□ -0.32
RTN4-201ENST00000317610 RPS28P62857 69 aaKnown RBP13.03□□□□□ -0.32
RTN4-201ENST00000317610 REG3AQ06141 175 aa13.03□□□□□ -0.32
RTN4-201ENST00000317610 C6orf99Q4VX62 202 aa13.03□□□□□ -0.32
RTN4-201ENST00000317610 C9orf116Q5BN46 136 aaPredicted RBP13.02□□□□□ -0.32
RTN4-201ENST00000317610 LINC00575Q6W349 94 aa13.02□□□□□ -0.33
RTN4-201ENST00000317610 SETD2Q9BYW2 2564 aaPredicted RBP13.02□□□□□ -0.33
RTN4-201ENST00000317610 MUC7Q8TAX7 377 aa13.01□□□□□ -0.33
RTN4-201ENST00000317610 TRBV10-3A0A0K0K1G6 114 aa13□□□□□ -0.33
RTN4-201ENST00000317610 ANGP03950 147 aaKnown RBP13□□□□□ -0.33
RTN4-201ENST00000317610 HILS1P60008 231 aa13□□□□□ -0.33
RTN4-201ENST00000317610 TMEM258P61165 79 aa13□□□□□ -0.33
RTN4-201ENST00000317610 Q8N3U1 123 aa13□□□□□ -0.33
RTN4-201ENST00000317610 LINC00482Q8N8I6 264 aa13□□□□□ -0.33
RTN4-201ENST00000317610 IGLV10-54A0A075B6I4 117 aa13□□□□□ -0.33
RTN4-201ENST00000317610 LOC107984640A0A0U1RRK4 108 aa13□□□□□ -0.33
RTN4-201ENST00000317610 CCDC168Q8NDH2 2452 aa12.99□□□□□ -0.33
RTN4-201ENST00000317610 KRTAP10-3P60369 221 aa12.97□□□□□ -0.33
RTN4-201ENST00000317610 FN1P02751 2386 aaKnown RBP12.97□□□□□ -0.33
RTN4-201ENST00000317610 LOC110117498A0A087WWA1 95 aa12.96□□□□□ -0.33
RTN4-201ENST00000317610 Q6ZQT0 140 aa12.96□□□□□ -0.33
RTN4-201ENST00000317610 UBL5Q9BZL1 73 aa12.96□□□□□ -0.33
RTN4-201ENST00000317610 ZNF561-AS1K7EIQ3 104 aa12.96□□□□□ -0.34
RTN4-201ENST00000317610 A0A0J9YWU9 116 aa12.95□□□□□ -0.34
RTN4-201ENST00000317610 IGHV4-30-4P0DP06 118 aa12.95□□□□□ -0.34
RTN4-201ENST00000317610 C10orf25Q5T742 122 aa12.95□□□□□ -0.34
RTN4-201ENST00000317610 FAM19A1Q7Z5A9 133 aa12.95□□□□□ -0.34
RTN4-201ENST00000317610 C6orf223Q8N319 242 aa12.95□□□□□ -0.34
RTN4-201ENST00000317610 IGLV6-57P01721 117 aa12.94□□□□□ -0.34
RTN4-201ENST00000317610 ENHOQ6UWT2 76 aa12.94□□□□□ -0.34
RTN4-201ENST00000317610 WFDC9Q8NEX5 89 aa12.94□□□□□ -0.34
RTN4-201ENST00000317610 RBM3P98179 157 aaKnown RBP12.94□□□□□ -0.34
RTN4-201ENST00000317610 SPAG11BQ08648 103 aa12.94□□□□□ -0.34
RTN4-201ENST00000317610 UNQ6190/PRO20217Q6UXQ8 127 aa12.94□□□□□ -0.34
RTN4-201ENST00000317610 GHRHP01286 108 aa12.93□□□□□ -0.34
RTN4-201ENST00000317610 DPH3Q96FX2 82 aa12.92□□□□□ -0.34
RTN4-201ENST00000317610 FAM19A5Q7Z5A7 132 aaPredicted RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 162.2 ms