RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 CBLN2Q8IUK8 224 aa10.11□□□□□ -0.79
LSM1-201ENST00000311351 LINC01561Q8N1V8 128 aa10.11□□□□□ -0.79
LSM1-201ENST00000311351 YPEL4Q96NS1 127 aa10.11□□□□□ -0.79
LSM1-201ENST00000311351 FAM168BA1KXE4 195 aa10.1□□□□□ -0.79
LSM1-201ENST00000311351 TLX1NBP0CAT3 122 aa10.1□□□□□ -0.79
LSM1-201ENST00000311351 PHF5AQ7RTV0 110 aaKnown RBP10.1□□□□□ -0.79
LSM1-201ENST00000311351 C18orf32Q8TCD1 76 aa10.1□□□□□ -0.79
LSM1-201ENST00000311351 TOMM7Q9P0U1 55 aa10.1□□□□□ -0.79
LSM1-201ENST00000311351 GAGE2EQ4V326 116 aa10.09□□□□□ -0.79
LSM1-201ENST00000311351 GAGE2DQ9UEU5 116 aa10.09□□□□□ -0.79
LSM1-201ENST00000311351 CDKN2A-AS1Q9UH64 79 aa10.09□□□□□ -0.79
LSM1-201ENST00000311351 TRBV30A0A0K0K1B3 111 aa10.08□□□□□ -0.8
LSM1-201ENST00000311351 LINC00614P0C842 121 aa10.08□□□□□ -0.8
LSM1-201ENST00000311351 HERVK_113P63121 156 aa10.08□□□□□ -0.8
LSM1-201ENST00000311351 TNXBP22105 4242 aa10.07□□□□□ -0.8
LSM1-201ENST00000311351 PRSS2P07478 247 aa10.07□□□□□ -0.8
LSM1-201ENST00000311351 FAM19A5Q7Z5A7 132 aaPredicted RBP10.07□□□□□ -0.8
LSM1-201ENST00000311351 PACRGQ96M98 296 aaPredicted RBP10.07□□□□□ -0.8
LSM1-201ENST00000311351 GEMIN7Q9H840 131 aaKnown RBP10.07□□□□□ -0.8
LSM1-201ENST00000311351 Q8IZM0 81 aa10.06□□□□□ -0.8
LSM1-201ENST00000311351 PSORS1C2Q9UIG4 136 aa10.06□□□□□ -0.8
LSM1-201ENST00000311351 NDUFC2-KCTD14E9PQ53 114 aa10.05□□□□□ -0.8
LSM1-201ENST00000311351 HBDP02042 147 aa10.05□□□□□ -0.8
LSM1-201ENST00000311351 SERTAD4-AS1Q5TG53 156 aa10.05□□□□□ -0.8
LSM1-201ENST00000311351 KRTAP7-1Q8IUC3 87 aa10.05□□□□□ -0.8
LSM1-201ENST00000311351 LINC00469Q8N7U9 141 aa10.05□□□□□ -0.8
LSM1-201ENST00000311351 CKS1BP61024 79 aa10.04□□□□□ -0.8
LSM1-201ENST00000311351 SRSF9Q13242 221 aaKnown RBP eCLIP10.04□□□□□ -0.8
LSM1-201ENST00000311351 SPINK6Q6UWN8 80 aa10.04□□□□□ -0.8
LSM1-201ENST00000311351 KRTAP11-1Q8IUC1 163 aa10.04□□□□□ -0.8
LSM1-201ENST00000311351 URB1-AS1Q96HZ7 61 aa10.04□□□□□ -0.8
LSM1-201ENST00000311351 A0A096LNJ9 63 aa10.03□□□□□ -0.8
LSM1-201ENST00000311351 SMIM1B2RUZ4 78 aa10.03□□□□□ -0.8
LSM1-201ENST00000311351 PMVKQ15126 192 aa10.03□□□□□ -0.8
LSM1-201ENST00000311351 C6orf226Q5I0X4 101 aa10.03□□□□□ -0.8
LSM1-201ENST00000311351 C9orf129Q5T035 196 aaKnown RBP10.03□□□□□ -0.8
LSM1-201ENST00000311351 CHCHD1Q96BP2 118 aaKnown RBP10.03□□□□□ -0.8
LSM1-201ENST00000311351 TINCRA0A1B0GVN0 87 aa10.02□□□□□ -0.81
LSM1-201ENST00000311351 C1orf137Q5JT78 98 aa10.02□□□□□ -0.81
LSM1-201ENST00000311351 CST9LQ9H4G1 147 aa10.02□□□□□ -0.81
LSM1-201ENST00000311351 IGLV5-45A0A087WSX0 123 aa10.01□□□□□ -0.81
LSM1-201ENST00000311351 M0QXV9 152 aa10.01□□□□□ -0.81
LSM1-201ENST00000311351 ATP5LO75964 103 aa10.01□□□□□ -0.81
LSM1-201ENST00000311351 LINC01600Q96MT4 127 aa10.01□□□□□ -0.81
LSM1-201ENST00000311351 TRGC2P03986 189 aa10□□□□□ -0.81
LSM1-201ENST00000311351 SPINK8P0C7L1 97 aa10□□□□□ -0.81
LSM1-201ENST00000311351 PMCHL1Q16048 86 aa10□□□□□ -0.81
LSM1-201ENST00000311351 BAGE3Q86Y29 109 aa10□□□□□ -0.81
LSM1-201ENST00000311351 F8VRH5 84 aa9.99□□□□□ -0.81
LSM1-201ENST00000311351 ODF1Q14990 250 aa9.99□□□□□ -0.81
LSM1-201ENST00000311351 XP32Q5T750 250 aa9.99□□□□□ -0.81
LSM1-201ENST00000311351 REG3GQ6UW15 175 aa9.99□□□□□ -0.81
LSM1-201ENST00000311351 PLA2G2DQ9UNK4 145 aa9.99□□□□□ -0.81
LSM1-201ENST00000311351 PDZD11Q5EBL8 140 aa9.98□□□□□ -0.81
LSM1-201ENST00000311351 COX7B2Q8TF08 81 aa9.98□□□□□ -0.81
LSM1-201ENST00000311351 XAGE1AQ9HD64 81 aa9.98□□□□□ -0.81
LSM1-201ENST00000311351 COLCA2A8K830 154 aa9.97□□□□□ -0.81
LSM1-201ENST00000311351 H3BRM9 83 aa9.97□□□□□ -0.81
LSM1-201ENST00000311351 HSBP1O75506 76 aa9.97□□□□□ -0.81
LSM1-201ENST00000311351 CXCL5P42830 114 aa9.97□□□□□ -0.81
LSM1-201ENST00000311351 NDUFA6P56556 154 aa9.97□□□□□ -0.81
LSM1-201ENST00000311351 UBE2BP63146 152 aa9.96□□□□□ -0.82
LSM1-201ENST00000311351 IGLV7-43P04211 117 aa9.95□□□□□ -0.82
LSM1-201ENST00000311351 IGLC3P0DOY3 106 aa9.95□□□□□ -0.82
LSM1-201ENST00000311351 ZNF22P17026 224 aaPredicted RBP9.93□□□□□ -0.82
LSM1-201ENST00000311351 UBR4Q5T4S7 5183 aa9.93□□□□□ -0.82
LSM1-201ENST00000311351 KRTAP10-8P60410 259 aa9.92□□□□□ -0.82
LSM1-201ENST00000311351 IFI27L1Q96BM0 104 aa9.92□□□□□ -0.82
LSM1-201ENST00000311351 C22orf24Q9Y442 160 aa9.91□□□□□ -0.82
LSM1-201ENST00000311351 TRAV12-1A0A0B4J245 112 aa9.9□□□□□ -0.82
LSM1-201ENST00000311351 IGLV5-39A0A0G2JS06 123 aa9.9□□□□□ -0.82
LSM1-201ENST00000311351 SERF1AO75920 110 aa9.9□□□□□ -0.82
LSM1-201ENST00000311351 DIRC1Q969H9 104 aa9.9□□□□□ -0.82
LSM1-201ENST00000311351 C11orf86A6NJI1 115 aa9.89□□□□□ -0.83
LSM1-201ENST00000311351 H0Y9J4 135 aa9.89□□□□□ -0.83
LSM1-201ENST00000311351 SCO1O75880 301 aa9.89□□□□□ -0.83
LSM1-201ENST00000311351 LEPROTL1O95214 131 aa9.88□□□□□ -0.83
LSM1-201ENST00000311351 FAM19A2Q8N3H0 131 aa9.88□□□□□ -0.83
LSM1-201ENST00000311351 KRTAP4-8Q9BYQ9 185 aa9.88□□□□□ -0.83
LSM1-201ENST00000311351 CHTOPQ9Y3Y2 248 aaKnown RBP9.88□□□□□ -0.83
LSM1-201ENST00000311351 HSPB8Q9UJY1 196 aa9.87□□□□□ -0.83
LSM1-201ENST00000311351 TMEM170BQ5T4T1 132 aa9.86□□□□□ -0.83
LSM1-201ENST00000311351 MRPL55Q7Z7F7 128 aaKnown RBP9.86□□□□□ -0.83
LSM1-201ENST00000311351 S100A1P23297 94 aa9.85□□□□□ -0.83
LSM1-201ENST00000311351 LBHQ53QV2 105 aaPredicted RBP9.85□□□□□ -0.83
LSM1-201ENST00000311351 SFTA2Q6UW10 78 aa9.85□□□□□ -0.83
LSM1-201ENST00000311351 TP73-AS1Q9UF72 201 aa9.85□□□□□ -0.83
LSM1-201ENST00000311351 PFN2P35080 140 aa9.84□□□□□ -0.83
LSM1-201ENST00000311351 LINC00310P59036 64 aa9.84□□□□□ -0.83
LSM1-201ENST00000311351 PRR26Q8N8Z3 221 aa9.84□□□□□ -0.83
LSM1-201ENST00000311351 GAGE10A6NGK3 116 aa9.83□□□□□ -0.84
LSM1-201ENST00000311351 HIST1H2BKO60814 126 aa9.83□□□□□ -0.84
LSM1-201ENST00000311351 HIST1H2BJP06899 126 aa9.83□□□□□ -0.84
LSM1-201ENST00000311351 KRTAP1-4P0C5Y4 121 aa9.83□□□□□ -0.84
LSM1-201ENST00000311351 HIST1H2BOP23527 126 aa9.83□□□□□ -0.84
LSM1-201ENST00000311351 HIST1H2BBP33778 126 aa9.83□□□□□ -0.84
LSM1-201ENST00000311351 HIST1H2BDP58876 126 aa9.83□□□□□ -0.84
LSM1-201ENST00000311351 HIST1H2BCP62807 126 aa9.83□□□□□ -0.84
LSM1-201ENST00000311351 HIST2H2BEQ16778 126 aa9.83□□□□□ -0.84
LSM1-201ENST00000311351 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms