RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 TRAV13-1A0A0B4J241 112 aa8.83□□□□□ -1
HIF3A-201ENST00000244302 EIF4EBP3O60516 100 aaPredicted RBP8.83□□□□□ -1
HIF3A-201ENST00000244302 TIMM17BO60830 172 aa8.83□□□□□ -1
HIF3A-201ENST00000244302 COX6A2Q02221 97 aa8.83□□□□□ -1
HIF3A-201ENST00000244302 LITAFQ99732 161 aa8.82□□□□□ -1
HIF3A-201ENST00000244302 C9JAW5 83 aa8.81□□□□□ -1
HIF3A-201ENST00000244302 SPINK8P0C7L1 97 aa8.81□□□□□ -1
HIF3A-201ENST00000244302 NDUFA12Q9UI09 145 aa8.81□□□□□ -1
HIF3A-201ENST00000244302 H3BNG1 76 aa8.81□□□□□ -1
HIF3A-201ENST00000244302 CKS1BP61024 79 aa8.81□□□□□ -1
HIF3A-201ENST00000244302 MIAQ16674 131 aa8.81□□□□□ -1
HIF3A-201ENST00000244302 Q1RN00 199 aa8.81□□□□□ -1
HIF3A-201ENST00000244302 LELP1Q5T871 98 aa8.81□□□□□ -1
HIF3A-201ENST00000244302 TRAV8-3A0A0A6YYJ7 113 aa8.8□□□□□ -1
HIF3A-201ENST00000244302 IFITM1P13164 125 aa8.8□□□□□ -1
HIF3A-201ENST00000244302 LINC01620Q4KN68 170 aa8.8□□□□□ -1
HIF3A-201ENST00000244302 ZFAND6Q6FIF0 208 aa8.8□□□□□ -1
HIF3A-201ENST00000244302 KMT2AQ03164 3969 aa8.79□□□□□ -1
HIF3A-201ENST00000244302 XGP55808 180 aa8.79□□□□□ -1
HIF3A-201ENST00000244302 TIRAPP58753 221 aa8.79□□□□□ -1
HIF3A-201ENST00000244302 LINC00269Q8N2A0 174 aa8.79□□□□□ -1
HIF3A-201ENST00000244302 LINC00588Q9Y4M8 146 aa8.79□□□□□ -1
HIF3A-201ENST00000244302 CSDC2Q9Y534 153 aaKnown RBP8.79□□□□□ -1
HIF3A-201ENST00000244302 IGLV5-45A0A087WSX0 123 aa8.78□□□□□ -1
HIF3A-201ENST00000244302 TRBV10-2A0A0K0K1G8 114 aa8.78□□□□□ -1
HIF3A-201ENST00000244302 COX6CP09669 75 aa8.78□□□□□ -1
HIF3A-201ENST00000244302 RPL13AP40429 203 aaKnown RBP8.78□□□□□ -1
HIF3A-201ENST00000244302 TMEM101Q96IK0 257 aa8.78□□□□□ -1
HIF3A-201ENST00000244302 GEMIN7Q9H840 131 aaKnown RBP8.78□□□□□ -1
HIF3A-201ENST00000244302 VPS13DQ5THJ4 4388 aa8.78□□□□□ -1
HIF3A-201ENST00000244302 MT-ATP8P03928 68 aa8.78□□□□□ -1
HIF3A-201ENST00000244302 LINC00242Q5T6M2 205 aa8.78□□□□□ -1
HIF3A-201ENST00000244302 H7C2G1 150 aa8.77□□□□□ -1.01
HIF3A-201ENST00000244302 TRIAP1O43715 76 aa8.77□□□□□ -1.01
HIF3A-201ENST00000244302 ANGP03950 147 aaKnown RBP8.77□□□□□ -1.01
HIF3A-201ENST00000244302 IGLV10-54A0A075B6I4 117 aa8.77□□□□□ -1.01
HIF3A-201ENST00000244302 H7C423 109 aa8.77□□□□□ -1.01
HIF3A-201ENST00000244302 NDUFA1O15239 70 aa8.77□□□□□ -1.01
HIF3A-201ENST00000244302 KLK12Q9UKR0 248 aa8.77□□□□□ -1.01
HIF3A-201ENST00000244302 H3BT86 120 aa8.76□□□□□ -1.01
HIF3A-201ENST00000244302 PRSS2P07478 247 aa8.76□□□□□ -1.01
HIF3A-201ENST00000244302 CDKN2A-AS1Q9UH64 79 aa8.76□□□□□ -1.01
HIF3A-201ENST00000244302 A0A1B0GUV1 79 aa8.75□□□□□ -1.01
HIF3A-201ENST00000244302 COPS9Q8WXC6 57 aa8.75□□□□□ -1.01
HIF3A-201ENST00000244302 APLNQ9ULZ1 77 aa8.75□□□□□ -1.01
HIF3A-201ENST00000244302 CIRBPQ14011 172 aaKnown RBP8.75□□□□□ -1.01
HIF3A-201ENST00000244302 ADAMTSL4-AS1Q5T5F5 129 aa8.75□□□□□ -1.01
HIF3A-201ENST00000244302 FAM19A3Q7Z5A8 133 aa8.75□□□□□ -1.01
HIF3A-201ENST00000244302 HERVK_113P63121 156 aa8.74□□□□□ -1.01
HIF3A-201ENST00000244302 LINC00959A0A1B0GUT2 108 aa8.74□□□□□ -1.01
HIF3A-201ENST00000244302 ENHOQ6UWT2 76 aa8.74□□□□□ -1.01
HIF3A-201ENST00000244302 NTN5Q8WTR8 489 aaPredicted RBP8.74□□□□□ -1.01
HIF3A-201ENST00000244302 XCL1P47992 114 aa8.73□□□□□ -1.01
HIF3A-201ENST00000244302 C15orf53Q8NAA6 179 aa8.73□□□□□ -1.01
HIF3A-201ENST00000244302 UBE2WQ96B02 151 aa8.73□□□□□ -1.01
HIF3A-201ENST00000244302 IGLV5-39A0A0G2JS06 123 aa8.72□□□□□ -1.01
HIF3A-201ENST00000244302 REG3AQ06141 175 aa8.72□□□□□ -1.01
HIF3A-201ENST00000244302 PPDPFQ9H3Y8 114 aa8.72□□□□□ -1.01
HIF3A-201ENST00000244302 LST1O00453 97 aa8.72□□□□□ -1.01
HIF3A-201ENST00000244302 C2orf82Q6UX34 121 aa8.72□□□□□ -1.01
HIF3A-201ENST00000244302 C5orf38Q86SI9 138 aa8.72□□□□□ -1.01
HIF3A-201ENST00000244302 TRAV8-4A0A0B4J246 113 aa8.71□□□□□ -1.02
HIF3A-201ENST00000244302 Q6Q795 121 aa8.71□□□□□ -1.02
HIF3A-201ENST00000244302 DNAH2Q9P225 4427 aa8.7□□□□□ -1.02
HIF3A-201ENST00000244302 SNCGO76070 127 aa8.7□□□□□ -1.02
HIF3A-201ENST00000244302 CCL18P55774 89 aa8.7□□□□□ -1.02
HIF3A-201ENST00000244302 FAM240AA0A1B0GVK7 77 aa8.69□□□□□ -1.02
HIF3A-201ENST00000244302 HYDINQ4G0P3 5121 aa8.69□□□□□ -1.02
HIF3A-201ENST00000244302 IGHV3OR16-9A0A0B4J2B5 98 aa8.69□□□□□ -1.02
HIF3A-201ENST00000244302 HERV-K104P63124 156 aa8.68□□□□□ -1.02
HIF3A-201ENST00000244302 CHCHD10Q8WYQ3 142 aaPredicted RBP8.68□□□□□ -1.02
HIF3A-201ENST00000244302 PRR34Q9NV39 138 aa8.68□□□□□ -1.02
HIF3A-201ENST00000244302 TEX49A0A1B0GTD5 131 aa8.68□□□□□ -1.02
HIF3A-201ENST00000244302 LINC00308Q8TCZ7 52 aa8.68□□□□□ -1.02
HIF3A-201ENST00000244302 KRTAP1-5Q9BYS1 174 aa8.68□□□□□ -1.02
HIF3A-201ENST00000244302 Q9H8V8 135 aa8.68□□□□□ -1.02
HIF3A-201ENST00000244302 SMIM1B2RUZ4 78 aa8.67□□□□□ -1.02
HIF3A-201ENST00000244302 GAGE2BQ13066 116 aa8.67□□□□□ -1.02
HIF3A-201ENST00000244302 GAGE2EQ4V326 116 aa8.67□□□□□ -1.02
HIF3A-201ENST00000244302 LINC01556Q5JQF7 62 aa8.67□□□□□ -1.02
HIF3A-201ENST00000244302 Q9HAA7 133 aa8.67□□□□□ -1.02
HIF3A-201ENST00000244302 GAGE2DQ9UEU5 116 aa8.67□□□□□ -1.02
HIF3A-201ENST00000244302 KLK5Q9Y337 293 aaPredicted RBP8.67□□□□□ -1.02
HIF3A-201ENST00000244302 NPC2P61916 151 aa8.66□□□□□ -1.02
HIF3A-201ENST00000244302 ANAPC13Q9BS18 74 aa8.66□□□□□ -1.02
HIF3A-201ENST00000244302 NUPR2A6NF83 97 aa8.66□□□□□ -1.02
HIF3A-201ENST00000244302 DNAH10OSP0CZ25 163 aa8.66□□□□□ -1.02
HIF3A-201ENST00000244302 SS18Q15532 418 aa8.66□□□□□ -1.02
HIF3A-201ENST00000244302 CLEC2BQ92478 149 aa8.65□□□□□ -1.02
HIF3A-201ENST00000244302 LINC00526Q96FQ7 95 aa8.65□□□□□ -1.02
HIF3A-201ENST00000244302 COX7A2LO14548 114 aa8.65□□□□□ -1.03
HIF3A-201ENST00000244302 DAND5Q8N907 189 aa8.65□□□□□ -1.03
HIF3A-201ENST00000244302 MUC7Q8TAX7 377 aa8.65□□□□□ -1.03
HIF3A-201ENST00000244302 ZNF625Q96I27 306 aaPredicted RBP8.65□□□□□ -1.03
HIF3A-201ENST00000244302 CASC10Q5T4H9 136 aa8.64□□□□□ -1.03
HIF3A-201ENST00000244302 KRTAP26-1Q6PEX3 210 aa8.64□□□□□ -1.03
HIF3A-201ENST00000244302 UBE2DNLQ8IWF7 75 aa8.64□□□□□ -1.03
HIF3A-201ENST00000244302 TOMM7Q9P0U1 55 aa8.63□□□□□ -1.03
HIF3A-201ENST00000244302 CRPP02741 224 aa8.63□□□□□ -1.03
HIF3A-201ENST00000244302 UPK3BQ9BT76 320 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms