RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 KRTAP10-9P60411 292 aa9.72□□□□□ -0.85
SF3A1-201ENST00000215793 CCDC179H3BU77 68 aa9.72□□□□□ -0.85
SF3A1-201ENST00000215793 TRAV7A0A075B6U4 112 aa9.71□□□□□ -0.85
SF3A1-201ENST00000215793 A6NED7 52 aa9.71□□□□□ -0.85
SF3A1-201ENST00000215793 NUPR2A6NF83 97 aa9.71□□□□□ -0.85
SF3A1-201ENST00000215793 TSPEAR-AS2P59090 65 aa9.71□□□□□ -0.85
SF3A1-201ENST00000215793 COX6A2Q02221 97 aa9.71□□□□□ -0.85
SF3A1-201ENST00000215793 C9orf116Q5BN46 136 aaPredicted RBP9.71□□□□□ -0.85
SF3A1-201ENST00000215793 F8WDY8 70 aa9.71□□□□□ -0.86
SF3A1-201ENST00000215793 C16orf95Q9H693 158 aa9.71□□□□□ -0.86
SF3A1-201ENST00000215793 LRRK2Q5S007 2527 aa9.71□□□□□ -0.86
SF3A1-201ENST00000215793 WDR87Q6ZQQ6 2873 aa9.71□□□□□ -0.86
SF3A1-201ENST00000215793 A0A1B0GUV1 79 aa9.7□□□□□ -0.86
SF3A1-201ENST00000215793 A0A0U1RQV1 116 aa9.7□□□□□ -0.86
SF3A1-201ENST00000215793 C6orf223Q8N319 242 aa9.7□□□□□ -0.86
SF3A1-201ENST00000215793 A0A1W2PPR1 153 aa9.7□□□□□ -0.86
SF3A1-201ENST00000215793 REG3GQ6UW15 175 aa9.69□□□□□ -0.86
SF3A1-201ENST00000215793 ANKRD11Q6UB99 2663 aaPredicted RBP9.69□□□□□ -0.86
SF3A1-201ENST00000215793 LRP4O75096 1905 aa9.69□□□□□ -0.86
SF3A1-201ENST00000215793 FAM30AQ9NZY2 134 aa9.69□□□□□ -0.86
SF3A1-201ENST00000215793 A0A096LNJ9 63 aa9.69□□□□□ -0.86
SF3A1-201ENST00000215793 SMR3AQ99954 134 aa9.69□□□□□ -0.86
SF3A1-201ENST00000215793 SMIM26A0A096LP01 95 aa9.68□□□□□ -0.86
SF3A1-201ENST00000215793 ADAMTSL4-AS1Q5T5F5 129 aa9.68□□□□□ -0.86
SF3A1-201ENST00000215793 Q6ZTC4 211 aa9.68□□□□□ -0.86
SF3A1-201ENST00000215793 CELA1Q9UNI1 258 aa9.68□□□□□ -0.86
SF3A1-201ENST00000215793 EML5Q05BV3 1969 aa9.67□□□□□ -0.86
SF3A1-201ENST00000215793 LINC01561Q8N1V8 128 aa9.67□□□□□ -0.86
SF3A1-201ENST00000215793 C2orf48Q96LS8 159 aa9.67□□□□□ -0.86
SF3A1-201ENST00000215793 RETNQ9HD89 108 aa9.67□□□□□ -0.86
SF3A1-201ENST00000215793 A0A087WYN8 130 aa9.66□□□□□ -0.86
SF3A1-201ENST00000215793 PRR3P79522 188 aaKnown RBP9.66□□□□□ -0.86
SF3A1-201ENST00000215793 LINC00208Q96KT6 92 aa9.65□□□□□ -0.86
SF3A1-201ENST00000215793 ZNF462Q96JM2 2506 aa9.64□□□□□ -0.87
SF3A1-201ENST00000215793 ESRGQ1W209 222 aa9.63□□□□□ -0.87
SF3A1-201ENST00000215793 A0A087WVE0 104 aa9.63□□□□□ -0.87
SF3A1-201ENST00000215793 Q6ZSN1 163 aa9.63□□□□□ -0.87
SF3A1-201ENST00000215793 Q8N3U1 123 aa9.62□□□□□ -0.87
SF3A1-201ENST00000215793 PRYO14603 147 aa9.62□□□□□ -0.87
SF3A1-201ENST00000215793 LYPD5Q6UWN5 251 aa9.61□□□□□ -0.87
SF3A1-201ENST00000215793 Q6ZVQ6 151 aa9.61□□□□□ -0.87
SF3A1-201ENST00000215793 LINC01547P58512 204 aaPredicted RBP9.6□□□□□ -0.87
SF3A1-201ENST00000215793 CIRBP-AS1Q8TBR5 109 aa9.6□□□□□ -0.87
SF3A1-201ENST00000215793 LINC00575Q6W349 94 aa9.6□□□□□ -0.87
SF3A1-201ENST00000215793 Q9BRP9 147 aa9.6□□□□□ -0.87
SF3A1-201ENST00000215793 IGLV5-52A0A0A0MRZ9 124 aa9.59□□□□□ -0.87
SF3A1-201ENST00000215793 KIF25-AS1Q9Y6Z4 181 aa9.59□□□□□ -0.87
SF3A1-201ENST00000215793 MTORP42345 2549 aa9.58□□□□□ -0.88
SF3A1-201ENST00000215793 A0A087WSZ3 146 aa9.58□□□□□ -0.88
SF3A1-201ENST00000215793 IGHV6-1A0A0B4J1U7 121 aa9.57□□□□□ -0.88
SF3A1-201ENST00000215793 PTPRSQ13332 1948 aa9.57□□□□□ -0.88
SF3A1-201ENST00000215793 LINC01556Q5JQF7 62 aa9.56□□□□□ -0.88
SF3A1-201ENST00000215793 TRBV7-6A0A0J9YX20 115 aa9.55□□□□□ -0.88
SF3A1-201ENST00000215793 AGRNO00468 2067 aa9.55□□□□□ -0.88
SF3A1-201ENST00000215793 Q8N2B8 174 aa9.55□□□□□ -0.88
SF3A1-201ENST00000215793 EXPH5Q8NEV8 1989 aa9.54□□□□□ -0.88
SF3A1-201ENST00000215793 RAI1Q7Z5J4 1906 aaPredicted RBP9.54□□□□□ -0.88
SF3A1-201ENST00000215793 LINC00337Q8N6G1 96 aa9.54□□□□□ -0.88
SF3A1-201ENST00000215793 TRBV7-7A0A0K0K1E9 115 aa9.54□□□□□ -0.88
SF3A1-201ENST00000215793 Q6ZRU5 148 aa9.54□□□□□ -0.88
SF3A1-201ENST00000215793 IGLV5-39A0A0G2JS06 123 aa9.54□□□□□ -0.88
SF3A1-201ENST00000215793 COL5A1P20908 1838 aaPredicted RBP9.53□□□□□ -0.88
SF3A1-201ENST00000215793 C11orf72Q8NBR9 251 aa9.53□□□□□ -0.88
SF3A1-201ENST00000215793 SPTBN4Q9H254 2564 aa9.53□□□□□ -0.88
SF3A1-201ENST00000215793 LINC00846Q9NV44 126 aa9.53□□□□□ -0.88
SF3A1-201ENST00000215793 MUC4Q99102 2169 aa9.52□□□□□ -0.88
SF3A1-201ENST00000215793 C1orf195Q5TG92 126 aa9.52□□□□□ -0.88
SF3A1-201ENST00000215793 C1orf134Q5TEV5 83 aa9.52□□□□□ -0.89
SF3A1-201ENST00000215793 IGHV3OR16-9A0A0B4J2B5 98 aa9.51□□□□□ -0.89
SF3A1-201ENST00000215793 SOSTDC1Q6X4U4 206 aa9.51□□□□□ -0.89
SF3A1-201ENST00000215793 LINC01546A6NGU7 62 aa9.51□□□□□ -0.89
SF3A1-201ENST00000215793 TMEM254Q8TBM7 123 aa9.51□□□□□ -0.89
SF3A1-201ENST00000215793 F8P00451 2351 aa9.5□□□□□ -0.89
SF3A1-201ENST00000215793 H0Y9P7 68 aa9.49□□□□□ -0.89
SF3A1-201ENST00000215793 FASNP49327 2511 aaKnown RBP9.49□□□□□ -0.89
SF3A1-201ENST00000215793 A8MTW9 85 aa9.49□□□□□ -0.89
SF3A1-201ENST00000215793 HCG22E2RYF7 251 aa9.49□□□□□ -0.89
SF3A1-201ENST00000215793 CXCL6P80162 114 aa9.49□□□□□ -0.89
SF3A1-201ENST00000215793 NHLRC4P0CG21 123 aaPredicted RBP9.48□□□□□ -0.89
SF3A1-201ENST00000215793 CPAMD8Q8IZJ3 1885 aa9.48□□□□□ -0.89
SF3A1-201ENST00000215793 LINC00315P59091 139 aa9.48□□□□□ -0.89
SF3A1-201ENST00000215793 PCOTHQ58A44 107 aa9.48□□□□□ -0.89
SF3A1-201ENST00000215793 C22orf24Q9Y442 160 aa9.48□□□□□ -0.89
SF3A1-201ENST00000215793 FHL3Q13643 280 aa9.47□□□□□ -0.89
SF3A1-201ENST00000215793 hDV103S1A0JD37 113 aa9.47□□□□□ -0.89
SF3A1-201ENST00000215793 FSHBP01225 129 aa9.47□□□□□ -0.89
SF3A1-201ENST00000215793 PRLHP81277 87 aa9.47□□□□□ -0.89
SF3A1-201ENST00000215793 PMAIP1Q13794 54 aa9.46□□□□□ -0.89
SF3A1-201ENST00000215793 FAM19A4Q96LR4 140 aa9.46□□□□□ -0.89
SF3A1-201ENST00000215793 SMCR5Q8TEV8 140 aa9.46□□□□□ -0.9
SF3A1-201ENST00000215793 LIMD2Q9BT23 127 aa9.45□□□□□ -0.9
SF3A1-201ENST00000215793 DEFB116Q30KQ4 102 aa9.45□□□□□ -0.9
SF3A1-201ENST00000215793 ADAMTS20P59510 1910 aa9.45□□□□□ -0.9
SF3A1-201ENST00000215793 IGLV5-45A0A087WSX0 123 aa9.43□□□□□ -0.9
SF3A1-201ENST00000215793 TET2Q6N021 2002 aaPredicted RBP9.42□□□□□ -0.9
SF3A1-201ENST00000215793 CDIP1Q9H305 208 aa9.41□□□□□ -0.9
SF3A1-201ENST00000215793 A0A1B0GW54 56 aa9.41□□□□□ -0.9
SF3A1-201ENST00000215793 KIAA0087Q14695 138 aa9.41□□□□□ -0.9
SF3A1-201ENST00000215793 SBSPONQ8IVN8 264 aa9.41□□□□□ -0.9
SF3A1-201ENST00000215793 H3BNG1 76 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 110.7 ms