RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 PLEKHB2Q96CS7 222 aa11.53□□□□□ -0.56
CLN3-252ENST00000636907 HIGD1BQ9P298 99 aa11.53□□□□□ -0.56
CLN3-252ENST00000636907 COL7A1Q02388 2944 aa11.53□□□□□ -0.56
CLN3-252ENST00000636907 LINC00269Q8N2A0 174 aa11.52□□□□□ -0.56
CLN3-252ENST00000636907 ANGP03950 147 aaKnown RBP11.52□□□□□ -0.57
CLN3-252ENST00000636907 NHLRC4P0CG21 123 aaPredicted RBP11.51□□□□□ -0.57
CLN3-252ENST00000636907 WFDC10BQ8IUB3 73 aa11.51□□□□□ -0.57
CLN3-252ENST00000636907 C15orf53Q8NAA6 179 aa11.51□□□□□ -0.57
CLN3-252ENST00000636907 SMIM1B2RUZ4 78 aa11.49□□□□□ -0.57
CLN3-252ENST00000636907 REG3AQ06141 175 aa11.49□□□□□ -0.57
CLN3-252ENST00000636907 SS18Q15532 418 aa11.49□□□□□ -0.57
CLN3-252ENST00000636907 IGHV3OR16-9A0A0B4J2B5 98 aa11.49□□□□□ -0.57
CLN3-252ENST00000636907 IGLV5-39A0A0G2JS06 123 aa11.49□□□□□ -0.57
CLN3-252ENST00000636907 HSD52Q0P140 79 aa11.49□□□□□ -0.57
CLN3-252ENST00000636907 BVES-AS1Q5T3Y7 98 aa11.49□□□□□ -0.57
CLN3-252ENST00000636907 SCGB1D4Q6XE38 83 aa11.49□□□□□ -0.57
CLN3-252ENST00000636907 IGLL5B9A064 214 aa11.48□□□□□ -0.57
CLN3-252ENST00000636907 CCL25O15444 150 aa11.48□□□□□ -0.57
CLN3-252ENST00000636907 IGHV3-30P01768 117 aa11.48□□□□□ -0.57
CLN3-252ENST00000636907 IGHV3-33P01772 117 aa11.48□□□□□ -0.57
CLN3-252ENST00000636907 IGHV3-30-5P0DP03 117 aa11.48□□□□□ -0.57
CLN3-252ENST00000636907 XCL1P47992 114 aa11.47□□□□□ -0.57
CLN3-252ENST00000636907 KLK12Q9UKR0 248 aa11.47□□□□□ -0.57
CLN3-252ENST00000636907 MEGF8Q7Z7M0 2845 aa11.47□□□□□ -0.57
CLN3-252ENST00000636907 STAB2Q8WWQ8 2551 aa11.47□□□□□ -0.57
CLN3-252ENST00000636907 LBHQ53QV2 105 aaPredicted RBP11.46□□□□□ -0.58
CLN3-252ENST00000636907 ZFAND6Q6FIF0 208 aa11.46□□□□□ -0.58
CLN3-252ENST00000636907 C10orf126Q8N4M7 172 aa11.46□□□□□ -0.58
CLN3-252ENST00000636907 NDUFA12Q9UI09 145 aa11.46□□□□□ -0.58
CLN3-252ENST00000636907 PRKDCP78527 4128 aaKnown RBP11.45□□□□□ -0.58
CLN3-252ENST00000636907 C5orf38Q86SI9 138 aa11.45□□□□□ -0.58
CLN3-252ENST00000636907 PRR34Q9NV39 138 aa11.45□□□□□ -0.58
CLN3-252ENST00000636907 IGLV10-54A0A075B6I4 117 aa11.44□□□□□ -0.58
CLN3-252ENST00000636907 A0A087WZ39 114 aa11.44□□□□□ -0.58
CLN3-252ENST00000636907 CHCHD10Q8WYQ3 142 aaPredicted RBP11.44□□□□□ -0.58
CLN3-252ENST00000636907 ENHOQ6UWT2 76 aa11.43□□□□□ -0.58
CLN3-252ENST00000636907 A0A0J9YXY3 114 aa11.43□□□□□ -0.58
CLN3-252ENST00000636907 CD164L2Q6UWJ8 174 aa11.43□□□□□ -0.58
CLN3-252ENST00000636907 HIST1H4GQ99525 98 aa11.43□□□□□ -0.58
CLN3-252ENST00000636907 LINC00588Q9Y4M8 146 aa11.43□□□□□ -0.58
CLN3-252ENST00000636907 GCSHP23434 173 aa11.42□□□□□ -0.58
CLN3-252ENST00000636907 TAL2Q16559 108 aa11.42□□□□□ -0.58
CLN3-252ENST00000636907 ORAOV1Q8WV07 137 aa11.42□□□□□ -0.58
CLN3-252ENST00000636907 NDUFA1O15239 70 aa11.41□□□□□ -0.58
CLN3-252ENST00000636907 LINC01556Q5JQF7 62 aa11.41□□□□□ -0.58
CLN3-252ENST00000636907 COL5A1-AS1Q5SY13 56 aa11.41□□□□□ -0.58
CLN3-252ENST00000636907 CEND1Q8N111 149 aa11.41□□□□□ -0.58
CLN3-252ENST00000636907 UBE2WQ96B02 151 aa11.41□□□□□ -0.58
CLN3-252ENST00000636907 CRPP02741 224 aa11.4□□□□□ -0.58
CLN3-252ENST00000636907 COX7B2Q8TF08 81 aa11.4□□□□□ -0.58
CLN3-252ENST00000636907 FXYD2P54710 66 aa11.4□□□□□ -0.59
CLN3-252ENST00000636907 CCL18P55774 89 aa11.4□□□□□ -0.59
CLN3-252ENST00000636907 TM2D2Q9BX73 214 aa11.4□□□□□ -0.59
CLN3-252ENST00000636907 Q9H8V8 135 aa11.4□□□□□ -0.59
CLN3-252ENST00000636907 SPANXB1Q9NS25 103 aaPredicted RBP11.4□□□□□ -0.59
CLN3-252ENST00000636907 K7EP13 123 aa11.39□□□□□ -0.59
CLN3-252ENST00000636907 FOXI1Q12951 378 aa11.39□□□□□ -0.59
CLN3-252ENST00000636907 SRSF9Q13242 221 aaKnown RBP eCLIP11.39□□□□□ -0.59
CLN3-252ENST00000636907 LINC01561Q8N1V8 128 aa11.39□□□□□ -0.59
CLN3-252ENST00000636907 TOMM7Q9P0U1 55 aa11.39□□□□□ -0.59
CLN3-252ENST00000636907 DYNC2H1Q8NCM8 4307 aaKnown RBP11.38□□□□□ -0.59
CLN3-252ENST00000636907 GAGE12HA6NDE8 117 aa11.38□□□□□ -0.59
CLN3-252ENST00000636907 COX7A2LO14548 114 aa11.38□□□□□ -0.59
CLN3-252ENST00000636907 DNAH10OSP0CZ25 163 aa11.38□□□□□ -0.59
CLN3-252ENST00000636907 ZNF625Q96I27 306 aaPredicted RBP11.38□□□□□ -0.59
CLN3-252ENST00000636907 LITAFQ99732 161 aa11.37□□□□□ -0.59
CLN3-252ENST00000636907 MIAQ16674 131 aa11.36□□□□□ -0.59
CLN3-252ENST00000636907 TRAV8-4A0A0B4J246 113 aa11.36□□□□□ -0.59
CLN3-252ENST00000636907 TMEM238C9JI98 176 aa11.36□□□□□ -0.59
CLN3-252ENST00000636907 APLNQ9ULZ1 77 aa11.36□□□□□ -0.59
CLN3-252ENST00000636907 PTTG1IPP53801 180 aa11.35□□□□□ -0.59
CLN3-252ENST00000636907 A0A1B0GV90 55 aa11.34□□□□□ -0.59
CLN3-252ENST00000636907 A6NDN8 102 aa11.34□□□□□ -0.59
CLN3-252ENST00000636907 MALP21145 153 aa11.34□□□□□ -0.59
CLN3-252ENST00000636907 ADAMTSL4-AS1Q5T5F5 129 aa11.34□□□□□ -0.59
CLN3-252ENST00000636907 UPK3BQ9BT76 320 aa11.34□□□□□ -0.59
CLN3-252ENST00000636907 TIMM17BO60830 172 aa11.33□□□□□ -0.6
CLN3-252ENST00000636907 HERV-K104P63124 156 aa11.33□□□□□ -0.6
CLN3-252ENST00000636907 NUPR2A6NF83 97 aa11.32□□□□□ -0.6
CLN3-252ENST00000636907 KRTAP26-1Q6PEX3 210 aa11.32□□□□□ -0.6
CLN3-252ENST00000636907 Q6ZVH6 145 aa11.32□□□□□ -0.6
CLN3-252ENST00000636907 Q8IZM0 81 aa11.32□□□□□ -0.6
CLN3-252ENST00000636907 TAX1BP3O14907 124 aa11.31□□□□□ -0.6
CLN3-252ENST00000636907 PRSS2P07478 247 aa11.31□□□□□ -0.6
CLN3-252ENST00000636907 C6orf226Q5I0X4 101 aa11.31□□□□□ -0.6
CLN3-252ENST00000636907 SPANXDQ9BXN6 97 aa11.31□□□□□ -0.6
CLN3-252ENST00000636907 NHP2Q9NX24 153 aaKnown RBP11.31□□□□□ -0.6
CLN3-252ENST00000636907 SPANXCQ9NY87 97 aa11.31□□□□□ -0.6
CLN3-252ENST00000636907 KIAA0087Q14695 138 aa11.3□□□□□ -0.6
CLN3-252ENST00000636907 MEIG1Q5JSS6 88 aa11.3□□□□□ -0.6
CLN3-252ENST00000636907 MUSTN1Q8IVN3 82 aa11.3□□□□□ -0.6
CLN3-252ENST00000636907 CSMD3Q7Z407 3707 aa11.3□□□□□ -0.6
CLN3-252ENST00000636907 DNAH7Q8WXX0 4024 aa11.3□□□□□ -0.6
CLN3-252ENST00000636907 K7ERJ3 54 aa11.3□□□□□ -0.6
CLN3-252ENST00000636907 CIRBPQ14011 172 aaKnown RBP11.3□□□□□ -0.6
CLN3-252ENST00000636907 KLK5Q9Y337 293 aaPredicted RBP11.3□□□□□ -0.6
CLN3-252ENST00000636907 PLECQ15149 4684 aaKnown RBP11.29□□□□□ -0.6
CLN3-252ENST00000636907 A0A0U1RRA0 63 aa11.29□□□□□ -0.6
CLN3-252ENST00000636907 APOMO95445 188 aa11.29□□□□□ -0.6
CLN3-252ENST00000636907 SMIM13P0DJ93 91 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 154.9 ms