RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 IGHV3-30-5P0DP03 117 aa10.99□□□□□ -0.65
CLN3-251ENST00000636853 TIRAPP58753 221 aa10.99□□□□□ -0.65
CLN3-251ENST00000636853 LINC00242Q5T6M2 205 aa10.99□□□□□ -0.65
CLN3-251ENST00000636853 CARD19Q96LW7 228 aa10.99□□□□□ -0.65
CLN3-251ENST00000636853 GAGE6Q13070 117 aa10.98□□□□□ -0.65
CLN3-251ENST00000636853 LOC107984156A0A0G2JMH3 177 aa10.98□□□□□ -0.65
CLN3-251ENST00000636853 ARL17AQ8IVW1 177 aa10.98□□□□□ -0.65
CLN3-251ENST00000636853 LINC01600Q96MT4 127 aa10.98□□□□□ -0.65
CLN3-251ENST00000636853 ERG28Q9UKR5 140 aa10.98□□□□□ -0.65
CLN3-251ENST00000636853 IGLV5-45A0A087WSX0 123 aa10.97□□□□□ -0.65
CLN3-251ENST00000636853 TRBV6-8A0A0A6YYG3 113 aa10.97□□□□□ -0.65
CLN3-251ENST00000636853 IGHV4-28A0A0C4DH34 117 aa10.97□□□□□ -0.65
CLN3-251ENST00000636853 A0A0J9YXY3 114 aa10.97□□□□□ -0.65
CLN3-251ENST00000636853 WIPF1O43516 503 aa10.97□□□□□ -0.65
CLN3-251ENST00000636853 MT-ATP8P03928 68 aa10.97□□□□□ -0.65
CLN3-251ENST00000636853 IGHV4-30-4P0DP06 118 aa10.97□□□□□ -0.65
CLN3-251ENST00000636853 GYPEP15421 78 aa10.97□□□□□ -0.65
CLN3-251ENST00000636853 XGP55808 180 aa10.97□□□□□ -0.65
CLN3-251ENST00000636853 OXLD1Q5BKU9 147 aa10.97□□□□□ -0.65
CLN3-251ENST00000636853 TMEM101Q96IK0 257 aa10.97□□□□□ -0.65
CLN3-251ENST00000636853 TCL1BO95988 128 aa10.96□□□□□ -0.65
CLN3-251ENST00000636853 HERVK_113P63121 156 aa10.96□□□□□ -0.65
CLN3-251ENST00000636853 NDUFA12Q9UI09 145 aa10.96□□□□□ -0.65
CLN3-251ENST00000636853 LYRM9A8MSI8 78 aa10.96□□□□□ -0.66
CLN3-251ENST00000636853 CFC1BP0CG36 223 aa10.95□□□□□ -0.66
CLN3-251ENST00000636853 CFC1P0CG37 223 aa10.95□□□□□ -0.66
CLN3-251ENST00000636853 CHCHD5Q9BSY4 110 aa10.95□□□□□ -0.66
CLN3-251ENST00000636853 PRO1854Q9UHT4 67 aa10.95□□□□□ -0.66
CLN3-251ENST00000636853 PRO0255Q9UI72 69 aa10.95□□□□□ -0.66
CLN3-251ENST00000636853 IGLV4-60A0A075B6I1 120 aa10.94□□□□□ -0.66
CLN3-251ENST00000636853 A0A096LPF7 62 aa10.94□□□□□ -0.66
CLN3-251ENST00000636853 H7C423 109 aa10.94□□□□□ -0.66
CLN3-251ENST00000636853 FAM19A3Q7Z5A8 133 aa10.94□□□□□ -0.66
CLN3-251ENST00000636853 Q8NAQ8 132 aa10.94□□□□□ -0.66
CLN3-251ENST00000636853 FBN1P35555 2871 aaKnown RBP10.94□□□□□ -0.66
CLN3-251ENST00000636853 CELA1Q9UNI1 258 aa10.93□□□□□ -0.66
CLN3-251ENST00000636853 IGKV3OR2-268A0A0C4DH90 116 aa10.93□□□□□ -0.66
CLN3-251ENST00000636853 ZFAND6Q6FIF0 208 aa10.93□□□□□ -0.66
CLN3-251ENST00000636853 MUSTN1Q8IVN3 82 aa10.92□□□□□ -0.66
CLN3-251ENST00000636853 LITAFQ99732 161 aa10.92□□□□□ -0.66
CLN3-251ENST00000636853 PAX4O43316 350 aa10.92□□□□□ -0.66
CLN3-251ENST00000636853 DAD1P61803 113 aa10.92□□□□□ -0.66
CLN3-251ENST00000636853 C3orf56Q8N813 242 aa10.92□□□□□ -0.66
CLN3-251ENST00000636853 A0A0B4J2C4 111 aa10.91□□□□□ -0.66
CLN3-251ENST00000636853 A4D1N5 150 aa10.91□□□□□ -0.66
CLN3-251ENST00000636853 CYSRT1A8MQ03 144 aa10.91□□□□□ -0.66
CLN3-251ENST00000636853 MIFP14174 115 aa10.91□□□□□ -0.66
CLN3-251ENST00000636853 KRTAP10-11P60412 298 aa10.91□□□□□ -0.66
CLN3-251ENST00000636853 ANKRD29Q8N6D5 301 aa10.91□□□□□ -0.66
CLN3-251ENST00000636853 RNF183Q96D59 192 aa10.91□□□□□ -0.66
CLN3-251ENST00000636853 IGLV5-39A0A0G2JS06 123 aa10.91□□□□□ -0.66
CLN3-251ENST00000636853 SMIM1B2RUZ4 78 aa10.91□□□□□ -0.66
CLN3-251ENST00000636853 ADAMTSL4-AS1Q5T5F5 129 aa10.91□□□□□ -0.66
CLN3-251ENST00000636853 SCGB1C2P0DMR2 95 aa10.9□□□□□ -0.66
CLN3-251ENST00000636853 F5H768 121 aa10.89□□□□□ -0.67
CLN3-251ENST00000636853 SFTA2Q6UW10 78 aa10.89□□□□□ -0.67
CLN3-251ENST00000636853 SLC25A20O43772 301 aa10.89□□□□□ -0.67
CLN3-251ENST00000636853 PRSS2P07478 247 aa10.89□□□□□ -0.67
CLN3-251ENST00000636853 NDUFA1O15239 70 aa10.88□□□□□ -0.67
CLN3-251ENST00000636853 Q6Q795 121 aa10.88□□□□□ -0.67
CLN3-251ENST00000636853 CMYA5Q8N3K9 4069 aa10.88□□□□□ -0.67
CLN3-251ENST00000636853 EIF4EBP3O60516 100 aaPredicted RBP10.88□□□□□ -0.67
CLN3-251ENST00000636853 IGHV3-33P01772 117 aa10.88□□□□□ -0.67
CLN3-251ENST00000636853 NPC2P61916 151 aa10.88□□□□□ -0.67
CLN3-251ENST00000636853 ANAPC13Q9BS18 74 aa10.88□□□□□ -0.67
CLN3-251ENST00000636853 Q9H8V8 135 aa10.88□□□□□ -0.67
CLN3-251ENST00000636853 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.87□□□□□ -0.67
CLN3-251ENST00000636853 ZNF625Q96I27 306 aaPredicted RBP10.87□□□□□ -0.67
CLN3-251ENST00000636853 SPART-AS1P0CW21 52 aa10.87□□□□□ -0.67
CLN3-251ENST00000636853 HTN3P15516 51 aa10.87□□□□□ -0.67
CLN3-251ENST00000636853 PRIMA1Q86XR5 153 aa10.87□□□□□ -0.67
CLN3-251ENST00000636853 STAB1Q9NY15 2570 aa10.87□□□□□ -0.67
CLN3-251ENST00000636853 ATP5G1P05496 136 aa10.86□□□□□ -0.67
CLN3-251ENST00000636853 RPL13AP40429 203 aaKnown RBP10.86□□□□□ -0.67
CLN3-251ENST00000636853 DAND5Q8N907 189 aa10.86□□□□□ -0.67
CLN3-251ENST00000636853 SPANXDQ9BXN6 97 aa10.86□□□□□ -0.67
CLN3-251ENST00000636853 SPANXCQ9NY87 97 aa10.86□□□□□ -0.67
CLN3-251ENST00000636853 MIAQ16674 131 aa10.85□□□□□ -0.67
CLN3-251ENST00000636853 SHISA2Q6UWI4 295 aa10.85□□□□□ -0.67
CLN3-251ENST00000636853 RETNQ9HD89 108 aa10.85□□□□□ -0.67
CLN3-251ENST00000636853 ATXN8Q156A1 80 aa10.84□□□□□ -0.67
CLN3-251ENST00000636853 A0A0U1RRA0 63 aa10.83□□□□□ -0.68
CLN3-251ENST00000636853 C9JAW5 83 aa10.83□□□□□ -0.68
CLN3-251ENST00000636853 TRBV30A0A0K0K1B3 111 aa10.83□□□□□ -0.68
CLN3-251ENST00000636853 TIMM17BO60830 172 aa10.83□□□□□ -0.68
CLN3-251ENST00000636853 ANK2Q01484 3957 aa10.83□□□□□ -0.68
CLN3-251ENST00000636853 PKD1L1Q8TDX9 2849 aa10.82□□□□□ -0.68
CLN3-251ENST00000636853 BAHCC1Q9P281 2608 aa10.82□□□□□ -0.68
CLN3-251ENST00000636853 LINC00959A0A1B0GUT2 108 aa10.82□□□□□ -0.68
CLN3-251ENST00000636853 H7C2G1 150 aa10.82□□□□□ -0.68
CLN3-251ENST00000636853 EGFEM1PQ0D2K5 195 aa10.82□□□□□ -0.68
CLN3-251ENST00000636853 MRPL23Q16540 153 aaKnown RBP10.82□□□□□ -0.68
CLN3-251ENST00000636853 CLPSL2Q6UWE3 100 aa10.82□□□□□ -0.68
CLN3-251ENST00000636853 IGHV3OR16-9A0A0B4J2B5 98 aa10.82□□□□□ -0.68
CLN3-251ENST00000636853 GAGE2BQ13066 116 aa10.82□□□□□ -0.68
CLN3-251ENST00000636853 GAGE2EQ4V326 116 aa10.82□□□□□ -0.68
CLN3-251ENST00000636853 GAGE2DQ9UEU5 116 aa10.82□□□□□ -0.68
CLN3-251ENST00000636853 TRBV10-2A0A0K0K1G8 114 aa10.81□□□□□ -0.68
CLN3-251ENST00000636853 A0A1B0GUV1 79 aa10.81□□□□□ -0.68
CLN3-251ENST00000636853 SNCGO76070 127 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 102.2 ms