RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 NOP16Q9Y3C1 178 aaKnown RBP-2.25□□□□□ -2.77
SCN1A-211ENST00000635893 PRDM2Q13029 1718 aa-2.25□□□□□ -2.77
SCN1A-211ENST00000635893 ABCC10Q5T3U5 1492 aa-2.26□□□□□ -2.77
SCN1A-211ENST00000635893 MYH6P13533 1939 aa-2.26□□□□□ -2.77
SCN1A-211ENST00000635893 I3L3M4 83 aa-2.26□□□□□ -2.77
SCN1A-211ENST00000635893 M0R135 149 aa-2.26□□□□□ -2.77
SCN1A-211ENST00000635893 TNP1P09430 55 aa-2.26□□□□□ -2.77
SCN1A-211ENST00000635893 TMEM170BQ5T4T1 132 aa-2.26□□□□□ -2.77
SCN1A-211ENST00000635893 CCDC32Q9BV29 185 aa-2.26□□□□□ -2.77
SCN1A-211ENST00000635893 HIGD1BQ9P298 99 aa-2.26□□□□□ -2.77
SCN1A-211ENST00000635893 MUC3AQ02505 3323 aa-2.27□□□□□ -2.77
SCN1A-211ENST00000635893 TIAM2Q8IVF5 1701 aa-2.27□□□□□ -2.77
SCN1A-211ENST00000635893 CLPSL1A2RUU4 121 aa-2.27□□□□□ -2.77
SCN1A-211ENST00000635893 BTG2P78543 158 aa-2.27□□□□□ -2.77
SCN1A-211ENST00000635893 C9orf116Q5BN46 136 aaPredicted RBP-2.27□□□□□ -2.77
SCN1A-211ENST00000635893 STX12Q86Y82 276 aa-2.27□□□□□ -2.77
SCN1A-211ENST00000635893 PCNTO95613 3336 aa-2.27□□□□□ -2.77
SCN1A-211ENST00000635893 CTXND1A0A1B0GTU2 59 aa-2.28□□□□□ -2.77
SCN1A-211ENST00000635893 CCL22O00626 93 aa-2.28□□□□□ -2.77
SCN1A-211ENST00000635893 POLR2HP52434 150 aaKnown RBP-2.28□□□□□ -2.77
SCN1A-211ENST00000635893 MRPS25P82663 173 aaKnown RBP-2.28□□□□□ -2.77
SCN1A-211ENST00000635893 ATP6V0E2Q8NHE4 81 aa-2.28□□□□□ -2.77
SCN1A-211ENST00000635893 DNAJC15Q9Y5T4 150 aa-2.28□□□□□ -2.77
SCN1A-211ENST00000635893 YTHDC2Q9H6S0 1430 aaKnown RBP-2.28□□□□□ -2.77
SCN1A-211ENST00000635893 NCOA3Q9Y6Q9 1424 aa-2.28□□□□□ -2.77
SCN1A-211ENST00000635893 KIF21AQ7Z4S6 1674 aa-2.28□□□□□ -2.77
SCN1A-211ENST00000635893 FAM223BA6NKX1 122 aa-2.29□□□□□ -2.78
SCN1A-211ENST00000635893 CCDC179H3BU77 68 aa-2.29□□□□□ -2.78
SCN1A-211ENST00000635893 RPL7P18124 248 aaKnown RBP-2.29□□□□□ -2.78
SCN1A-211ENST00000635893 CCL18P55774 89 aa-2.29□□□□□ -2.78
SCN1A-211ENST00000635893 PSPHP78330 225 aa-2.29□□□□□ -2.78
SCN1A-211ENST00000635893 COX17Q14061 63 aa-2.29□□□□□ -2.78
SCN1A-211ENST00000635893 ZNF818PQ6ZRF7 136 aa-2.29□□□□□ -2.78
SCN1A-211ENST00000635893 THEM6Q8WUY1 208 aa-2.29□□□□□ -2.78
SCN1A-211ENST00000635893 MED23Q9ULK4 1368 aa-2.29□□□□□ -2.78
SCN1A-211ENST00000635893 DOCK2Q92608 1830 aa-2.29□□□□□ -2.78
SCN1A-211ENST00000635893 RGPD2P0DJD1 1756 aa-2.3□□□□□ -2.78
SCN1A-211ENST00000635893 SCN11AQ9UI33 1791 aa-2.3□□□□□ -2.78
SCN1A-211ENST00000635893 C4AP0C0L4 1744 aa-2.3□□□□□ -2.78
SCN1A-211ENST00000635893 C4BP0C0L5 1744 aa-2.3□□□□□ -2.78
SCN1A-211ENST00000635893 LRRC37A3O60309 1634 aa-2.3□□□□□ -2.78
SCN1A-211ENST00000635893 CCDC141Q6ZP82 1450 aa-2.3□□□□□ -2.78
SCN1A-211ENST00000635893 PP6455Q8WZ26 134 aa-2.3□□□□□ -2.78
SCN1A-211ENST00000635893 MUC22E2RYF6 1773 aaPredicted RBP-2.31□□□□□ -2.78
SCN1A-211ENST00000635893 MBD5Q9P267 1494 aa-2.31□□□□□ -2.78
SCN1A-211ENST00000635893 MKI67P46013 3256 aaKnown RBP-2.31□□□□□ -2.78
SCN1A-211ENST00000635893 A0A1W2PRE2 83 aa-2.31□□□□□ -2.78
SCN1A-211ENST00000635893 HCG22E2RYF7 251 aa-2.31□□□□□ -2.78
SCN1A-211ENST00000635893 PIRTP0C851 137 aa-2.31□□□□□ -2.78
SCN1A-211ENST00000635893 SERPINB1P30740 379 aa-2.31□□□□□ -2.78
SCN1A-211ENST00000635893 TMEM78Q5T7P6 136 aa-2.31□□□□□ -2.78
SCN1A-211ENST00000635893 TMED4Q7Z7H5 227 aa-2.31□□□□□ -2.78
SCN1A-211ENST00000635893 MRPL40Q9NQ50 206 aaKnown RBP-2.31□□□□□ -2.78
SCN1A-211ENST00000635893 UBE2D4Q9Y2X8 147 aa-2.31□□□□□ -2.78
SCN1A-211ENST00000635893 ANKRD36A6QL64 1941 aa-2.31□□□□□ -2.78
SCN1A-211ENST00000635893 BTAF1O14981 1849 aa-2.31□□□□□ -2.78
SCN1A-211ENST00000635893 DNAH14Q0VDD8 3507 aa-2.31□□□□□ -2.78
SCN1A-211ENST00000635893 DISP2A7MBM2 1401 aa-2.32□□□□□ -2.78
SCN1A-211ENST00000635893 SZT2Q5T011 3432 aa-2.32□□□□□ -2.78
SCN1A-211ENST00000635893 MMP24-AS1A0A0U1RRL7 71 aa-2.32□□□□□ -2.78
SCN1A-211ENST00000635893 E7EQ34 232 aa-2.32□□□□□ -2.78
SCN1A-211ENST00000635893 HOPXQ9BPY8 73 aaPredicted RBP-2.32□□□□□ -2.78
SCN1A-211ENST00000635893 A0A0G2JMZ2 1700 aa-2.32□□□□□ -2.78
SCN1A-211ENST00000635893 QRICH2Q9H0J4 1663 aa-2.32□□□□□ -2.78
SCN1A-211ENST00000635893 UHRF1BP1LA0JNW5 1464 aa-2.33□□□□□ -2.78
SCN1A-211ENST00000635893 CEP250Q9BV73 2442 aa-2.33□□□□□ -2.78
SCN1A-211ENST00000635893 TMEM238C9JI98 176 aa-2.33□□□□□ -2.78
SCN1A-211ENST00000635893 J3QLW9 94 aa-2.33□□□□□ -2.78
SCN1A-211ENST00000635893 FAM107AO95990 144 aa-2.33□□□□□ -2.78
SCN1A-211ENST00000635893 MGPP08493 103 aa-2.33□□□□□ -2.78
SCN1A-211ENST00000635893 Q6AWC8 147 aa-2.33□□□□□ -2.78
SCN1A-211ENST00000635893 C10orf82Q8WW14 230 aa-2.33□□□□□ -2.78
SCN1A-211ENST00000635893 STOML2Q9UJZ1 356 aa-2.33□□□□□ -2.78
SCN1A-211ENST00000635893 R4GMQ9 66 aa-2.33□□□□□ -2.78
SCN1A-211ENST00000635893 KDM5CP41229 1560 aa-2.33□□□□□ -2.78
SCN1A-211ENST00000635893 SHANK2Q9UPX8 1470 aa-2.33□□□□□ -2.78
SCN1A-211ENST00000635893 RAPGEF6Q8TEU7 1601 aa-2.34□□□□□ -2.78
SCN1A-211ENST00000635893 BORCS7-ASMTA0A0B4J1R7 106 aa-2.34□□□□□ -2.78
SCN1A-211ENST00000635893 LINC01546A6NGU7 62 aa-2.34□□□□□ -2.78
SCN1A-211ENST00000635893 UBE2D1P51668 147 aa-2.34□□□□□ -2.78
SCN1A-211ENST00000635893 Q6ZUT4 128 aa-2.34□□□□□ -2.78
SCN1A-211ENST00000635893 CCDC115Q96NT0 180 aa-2.34□□□□□ -2.78
SCN1A-211ENST00000635893 PRO3102Q9H379 93 aa-2.34□□□□□ -2.78
SCN1A-211ENST00000635893 PRDM15P57071 1507 aaPredicted RBP-2.34□□□□□ -2.78
SCN1A-211ENST00000635893 TRBV7-3A0A075B6L6 115 aa-2.35□□□□□ -2.79
SCN1A-211ENST00000635893 CLLU1Q5K131 121 aa-2.35□□□□□ -2.79
SCN1A-211ENST00000635893 C10orf113Q5VZT2 155 aa-2.35□□□□□ -2.79
SCN1A-211ENST00000635893 SCIMPQ6UWF3 145 aa-2.35□□□□□ -2.79
SCN1A-211ENST00000635893 DEFB106AQ8N104 65 aa-2.35□□□□□ -2.79
SCN1A-211ENST00000635893 CEP170BQ9Y4F5 1589 aaPredicted RBP-2.36□□□□□ -2.79
SCN1A-211ENST00000635893 PPP1R17O96001 155 aa-2.36□□□□□ -2.79
SCN1A-211ENST00000635893 RBP4P02753 201 aa-2.36□□□□□ -2.79
SCN1A-211ENST00000635893 TTC9CQ8N5M4 171 aa-2.36□□□□□ -2.79
SCN1A-211ENST00000635893 FDCSPQ8NFU4 85 aa-2.36□□□□□ -2.79
SCN1A-211ENST00000635893 CLIP1P30622 1438 aa-2.36□□□□□ -2.79
SCN1A-211ENST00000635893 KIAA1551Q9HCM1 1747 aa-2.37□□□□□ -2.79
SCN1A-211ENST00000635893 CFAP47Q6ZTR5 3102 aa-2.37□□□□□ -2.79
SCN1A-211ENST00000635893 MT-ND4LP03901 98 aa-2.37□□□□□ -2.79
SCN1A-211ENST00000635893 HLA-DRB4P13762 266 aa-2.37□□□□□ -2.79
SCN1A-211ENST00000635893 LINC01545Q5VT33 79 aa-2.37□□□□□ -2.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms