RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 UBE2L6O14933 153 aa10.49□□□□□ -0.73
SHROOM1-208ENST00000617339 TIMM21Q9BVV7 248 aa10.49□□□□□ -0.73
SHROOM1-208ENST00000617339 IGHV3-30-3P0DP02 117 aa10.49□□□□□ -0.73
SHROOM1-208ENST00000617339 HILS1P60008 231 aa10.49□□□□□ -0.73
SHROOM1-208ENST00000617339 TMEM89A2RUT3 159 aa10.48□□□□□ -0.73
SHROOM1-208ENST00000617339 Q6ZTI0 123 aa10.48□□□□□ -0.73
SHROOM1-208ENST00000617339 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.48□□□□□ -0.73
SHROOM1-208ENST00000617339 KMT2BQ9UMN6 2715 aaPredicted RBP10.48□□□□□ -0.73
SHROOM1-208ENST00000617339 C9orf85Q96MD7 179 aa10.48□□□□□ -0.73
SHROOM1-208ENST00000617339 KLK5Q9Y337 293 aaPredicted RBP10.48□□□□□ -0.73
SHROOM1-208ENST00000617339 Q6Q795 121 aa10.47□□□□□ -0.73
SHROOM1-208ENST00000617339 TMEM86BQ8N661 226 aa10.47□□□□□ -0.73
SHROOM1-208ENST00000617339 ZNF625Q96I27 306 aaPredicted RBP10.47□□□□□ -0.73
SHROOM1-208ENST00000617339 FBN1P35555 2871 aaKnown RBP10.47□□□□□ -0.73
SHROOM1-208ENST00000617339 LOC107984640A0A0U1RRK4 108 aa10.47□□□□□ -0.73
SHROOM1-208ENST00000617339 DEFB135Q30KP9 77 aa10.47□□□□□ -0.73
SHROOM1-208ENST00000617339 TOMM7Q9P0U1 55 aa10.47□□□□□ -0.73
SHROOM1-208ENST00000617339 MRAPQ8TCY5 172 aa10.47□□□□□ -0.73
SHROOM1-208ENST00000617339 TRBV30A0A0K0K1B3 111 aa10.46□□□□□ -0.73
SHROOM1-208ENST00000617339 RNASE1P07998 156 aaKnown RBP10.46□□□□□ -0.73
SHROOM1-208ENST00000617339 NDUFA12Q9UI09 145 aa10.46□□□□□ -0.73
SHROOM1-208ENST00000617339 I3L3M4 83 aa10.46□□□□□ -0.73
SHROOM1-208ENST00000617339 LINC00694P0DN24 101 aa10.46□□□□□ -0.73
SHROOM1-208ENST00000617339 TRAV13-1A0A0B4J241 112 aa10.46□□□□□ -0.74
SHROOM1-208ENST00000617339 NDUFA7O95182 113 aa10.45□□□□□ -0.74
SHROOM1-208ENST00000617339 PRB2P02812 416 aaPredicted RBP10.45□□□□□ -0.74
SHROOM1-208ENST00000617339 TMEM101Q96IK0 257 aa10.45□□□□□ -0.74
SHROOM1-208ENST00000617339 SPATA3Q8NHX4 192 aa10.44□□□□□ -0.74
SHROOM1-208ENST00000617339 IGLV4-3A0A075B6K6 122 aa10.44□□□□□ -0.74
SHROOM1-208ENST00000617339 KRTAP1-1Q07627 177 aa10.44□□□□□ -0.74
SHROOM1-208ENST00000617339 TRBV27A0A0K0K1C4 114 aa10.43□□□□□ -0.74
SHROOM1-208ENST00000617339 C11orf68Q9H3H3 251 aaKnown RBP10.43□□□□□ -0.74
SHROOM1-208ENST00000617339 LOC100131303A0A0U1RQF7 123 aa10.42□□□□□ -0.74
SHROOM1-208ENST00000617339 MED14OSP0DP75 135 aa10.42□□□□□ -0.74
SHROOM1-208ENST00000617339 C1orf158Q8N1D5 194 aa10.42□□□□□ -0.74
SHROOM1-208ENST00000617339 C20orf203Q8NBC4 194 aa10.42□□□□□ -0.74
SHROOM1-208ENST00000617339 RPL36AP83881 106 aaKnown RBP10.42□□□□□ -0.74
SHROOM1-208ENST00000617339 RPL36ALQ969Q0 106 aaKnown RBP10.42□□□□□ -0.74
SHROOM1-208ENST00000617339 CLPSL2Q6UWE3 100 aa10.41□□□□□ -0.74
SHROOM1-208ENST00000617339 H3BT86 120 aa10.41□□□□□ -0.74
SHROOM1-208ENST00000617339 OXLD1Q5BKU9 147 aa10.41□□□□□ -0.74
SHROOM1-208ENST00000617339 Q8N2B8 174 aa10.41□□□□□ -0.74
SHROOM1-208ENST00000617339 RNF152Q8N8N0 203 aa10.41□□□□□ -0.74
SHROOM1-208ENST00000617339 GAGE2AQ6NT46 116 aa10.4□□□□□ -0.74
SHROOM1-208ENST00000617339 LITAFQ99732 161 aa10.4□□□□□ -0.74
SHROOM1-208ENST00000617339 F5H768 121 aa10.4□□□□□ -0.75
SHROOM1-208ENST00000617339 LST1O00453 97 aa10.4□□□□□ -0.75
SHROOM1-208ENST00000617339 POM121L12Q8N7R1 296 aa10.4□□□□□ -0.75
SHROOM1-208ENST00000617339 LINC00467Q9BRT7 94 aa10.39□□□□□ -0.75
SHROOM1-208ENST00000617339 NXPH4O95158 308 aa10.39□□□□□ -0.75
SHROOM1-208ENST00000617339 SMCR5Q8TEV8 140 aa10.38□□□□□ -0.75
SHROOM1-208ENST00000617339 MIAQ16674 131 aa10.38□□□□□ -0.75
SHROOM1-208ENST00000617339 TMEM126AQ9H061 195 aa10.38□□□□□ -0.75
SHROOM1-208ENST00000617339 PKD1L1Q8TDX9 2849 aa10.37□□□□□ -0.75
SHROOM1-208ENST00000617339 HERVK_113P63121 156 aa10.37□□□□□ -0.75
SHROOM1-208ENST00000617339 RHOHQ15669 191 aa10.37□□□□□ -0.75
SHROOM1-208ENST00000617339 OR13C6PQ8NH95 151 aa10.37□□□□□ -0.75
SHROOM1-208ENST00000617339 ANK3Q12955 4377 aaKnown RBP10.37□□□□□ -0.75
SHROOM1-208ENST00000617339 IGHV1-58A0A0C4DH39 117 aa10.36□□□□□ -0.75
SHROOM1-208ENST00000617339 KRTAP10-3P60369 221 aa10.36□□□□□ -0.75
SHROOM1-208ENST00000617339 C11orf72Q8NBR9 251 aa10.35□□□□□ -0.75
SHROOM1-208ENST00000617339 TRBV6-5A0A0K0K1A5 114 aa10.34□□□□□ -0.75
SHROOM1-208ENST00000617339 TRBV7-7A0A0K0K1E9 115 aa10.34□□□□□ -0.75
SHROOM1-208ENST00000617339 C3orf22Q8N5N4 141 aa10.34□□□□□ -0.75
SHROOM1-208ENST00000617339 CMC4P56277 68 aaPredicted RBP10.34□□□□□ -0.75
SHROOM1-208ENST00000617339 DAD1P61803 113 aa10.34□□□□□ -0.75
SHROOM1-208ENST00000617339 DAZ2Q13117 558 aaKnown RBP10.34□□□□□ -0.75
SHROOM1-208ENST00000617339 C9orf66Q5T8R8 295 aa10.34□□□□□ -0.75
SHROOM1-208ENST00000617339 DAZ4Q86SG3 579 aaKnown RBP10.34□□□□□ -0.75
SHROOM1-208ENST00000617339 DAZ3Q9NR90 486 aaKnown RBP10.34□□□□□ -0.75
SHROOM1-208ENST00000617339 VSIG2Q96IQ7 327 aa10.33□□□□□ -0.76
SHROOM1-208ENST00000617339 Q9HAA7 133 aa10.33□□□□□ -0.76
SHROOM1-208ENST00000617339 C5orf47Q569G3 176 aa10.33□□□□□ -0.76
SHROOM1-208ENST00000617339 CSDC2Q9Y534 153 aaKnown RBP10.33□□□□□ -0.76
SHROOM1-208ENST00000617339 CDKN2A-AS1Q9UH64 79 aa10.32□□□□□ -0.76
SHROOM1-208ENST00000617339 BAALC-AS2P0C853 105 aa10.32□□□□□ -0.76
SHROOM1-208ENST00000617339 FAM240AA0A1B0GVK7 77 aa10.32□□□□□ -0.76
SHROOM1-208ENST00000617339 SPANXDQ9BXN6 97 aa10.32□□□□□ -0.76
SHROOM1-208ENST00000617339 SPANXCQ9NY87 97 aa10.32□□□□□ -0.76
SHROOM1-208ENST00000617339 TRAV25A0A0B4J276 109 aa10.31□□□□□ -0.76
SHROOM1-208ENST00000617339 hADV29S1A0JD25 119 aa10.31□□□□□ -0.76
SHROOM1-208ENST00000617339 Q9H8V8 135 aa10.31□□□□□ -0.76
SHROOM1-208ENST00000617339 J3KT08 172 aa10.31□□□□□ -0.76
SHROOM1-208ENST00000617339 MRPS36P82909 103 aaKnown RBP10.3□□□□□ -0.76
SHROOM1-208ENST00000617339 SPANXA1Q9NS26 97 aa10.3□□□□□ -0.76
SHROOM1-208ENST00000617339 IGKV3D-7A0A0C4DH55 119 aa10.3□□□□□ -0.76
SHROOM1-208ENST00000617339 HIST1H4AP62805 103 aaKnown RBP10.3□□□□□ -0.76
SHROOM1-208ENST00000617339 SDIM1Q6ZPB5 146 aa10.3□□□□□ -0.76
SHROOM1-208ENST00000617339 FAM19A5Q7Z5A7 132 aaPredicted RBP10.3□□□□□ -0.76
SHROOM1-208ENST00000617339 GYPEP15421 78 aa10.29□□□□□ -0.76
SHROOM1-208ENST00000617339 DNAJC30Q96LL9 226 aa10.29□□□□□ -0.76
SHROOM1-208ENST00000617339 UQCRQO14949 82 aa10.29□□□□□ -0.76
SHROOM1-208ENST00000617339 GIG44P09565 113 aaPredicted RBP10.29□□□□□ -0.76
SHROOM1-208ENST00000617339 CIRBPQ14011 172 aaKnown RBP10.29□□□□□ -0.76
SHROOM1-208ENST00000617339 LINC00643Q86TS7 51 aa10.29□□□□□ -0.76
SHROOM1-208ENST00000617339 FAM104AQ969W3 186 aa10.29□□□□□ -0.76
SHROOM1-208ENST00000617339 SMIM9A6NGZ8 99 aa10.28□□□□□ -0.76
SHROOM1-208ENST00000617339 IGLV10-54A0A075B6I4 117 aa10.28□□□□□ -0.76
SHROOM1-208ENST00000617339 IGLV1-51P01701 117 aa10.28□□□□□ -0.76
SHROOM1-208ENST00000617339 COX6A2Q02221 97 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms