RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 MRPS36P82909 103 aaKnown RBP10.24□□□□□ -0.77
CPSF1-212ENST00000616140 ANKRD17O75179 2603 aaKnown RBP10.24□□□□□ -0.77
CPSF1-212ENST00000616140 UBE2D1P51668 147 aa10.24□□□□□ -0.77
CPSF1-212ENST00000616140 SCXQ7RTU7 201 aa10.24□□□□□ -0.77
CPSF1-212ENST00000616140 UQCRQO14949 82 aa10.23□□□□□ -0.77
CPSF1-212ENST00000616140 MIFP14174 115 aa10.23□□□□□ -0.77
CPSF1-212ENST00000616140 ZNF843Q8N446 348 aa10.23□□□□□ -0.77
CPSF1-212ENST00000616140 A0A096LNI7 61 aa10.22□□□□□ -0.77
CPSF1-212ENST00000616140 XGP55808 180 aa10.22□□□□□ -0.77
CPSF1-212ENST00000616140 ODF3L2Q3SX64 289 aa10.22□□□□□ -0.77
CPSF1-212ENST00000616140 EXPH5Q8NEV8 1989 aa10.22□□□□□ -0.77
CPSF1-212ENST00000616140 ENHOQ6UWT2 76 aa10.22□□□□□ -0.77
CPSF1-212ENST00000616140 NDUFA7O95182 113 aa10.21□□□□□ -0.77
CPSF1-212ENST00000616140 CD164L2Q6UWJ8 174 aa10.21□□□□□ -0.77
CPSF1-212ENST00000616140 LINC00959A0A1B0GUT2 108 aa10.21□□□□□ -0.77
CPSF1-212ENST00000616140 SPATA25Q9BR10 227 aa10.21□□□□□ -0.77
CPSF1-212ENST00000616140 Q6ZQY7 126 aa10.21□□□□□ -0.78
CPSF1-212ENST00000616140 LINC00242Q5T6M2 205 aa10.21□□□□□ -0.78
CPSF1-212ENST00000616140 COX8CQ7Z4L0 72 aa10.21□□□□□ -0.78
CPSF1-212ENST00000616140 CPAMD8Q8IZJ3 1885 aa10.2□□□□□ -0.78
CPSF1-212ENST00000616140 CDC42SE2Q9NRR3 84 aa10.2□□□□□ -0.78
CPSF1-212ENST00000616140 H0Y9J4 135 aa10.19□□□□□ -0.78
CPSF1-212ENST00000616140 UBE2D3P61077 147 aa10.19□□□□□ -0.78
CPSF1-212ENST00000616140 UBE2D2P62837 147 aa10.19□□□□□ -0.78
CPSF1-212ENST00000616140 SMIM11BQ8TCY0 68 aa10.19□□□□□ -0.78
CPSF1-212ENST00000616140 SYCNQ0VAF6 134 aa10.19□□□□□ -0.78
CPSF1-212ENST00000616140 TET2Q6N021 2002 aaPredicted RBP10.18□□□□□ -0.78
CPSF1-212ENST00000616140 IGLV4-69A0A075B6H9 119 aa10.17□□□□□ -0.78
CPSF1-212ENST00000616140 CCKP06307 115 aa10.17□□□□□ -0.78
CPSF1-212ENST00000616140 TSPEAR-AS2P59090 65 aa10.17□□□□□ -0.78
CPSF1-212ENST00000616140 CRIP2P52943 208 aaPredicted RBP10.17□□□□□ -0.78
CPSF1-212ENST00000616140 MRGPRG-AS1Q2M3A8 158 aa10.17□□□□□ -0.78
CPSF1-212ENST00000616140 ATP5EP2Q5VTU8 51 aa10.17□□□□□ -0.78
CPSF1-212ENST00000616140 C1orf158Q8N1D5 194 aa10.16□□□□□ -0.78
CPSF1-212ENST00000616140 KRTAP10-9P60411 292 aa10.16□□□□□ -0.78
CPSF1-212ENST00000616140 HILS1P60008 231 aa10.15□□□□□ -0.78
CPSF1-212ENST00000616140 ZNF580Q9UK33 172 aa10.15□□□□□ -0.78
CPSF1-212ENST00000616140 KLK5Q9Y337 293 aaPredicted RBP10.15□□□□□ -0.78
CPSF1-212ENST00000616140 RAI1Q7Z5J4 1906 aaPredicted RBP10.15□□□□□ -0.78
CPSF1-212ENST00000616140 BPTFQ12830 3046 aa10.15□□□□□ -0.78
CPSF1-212ENST00000616140 IGKV2-28A0A075B6P5 120 aa10.15□□□□□ -0.78
CPSF1-212ENST00000616140 IGKV2D-28P01615 120 aa10.15□□□□□ -0.78
CPSF1-212ENST00000616140 KPRPQ5T749 579 aaPredicted RBP10.15□□□□□ -0.79
CPSF1-212ENST00000616140 ADAMTS20P59510 1910 aa10.14□□□□□ -0.79
CPSF1-212ENST00000616140 IGLV2-18A0A075B6J9 118 aa10.14□□□□□ -0.79
CPSF1-212ENST00000616140 FAM19A1Q7Z5A9 133 aa10.14□□□□□ -0.79
CPSF1-212ENST00000616140 SMIM1B2RUZ4 78 aa10.14□□□□□ -0.79
CPSF1-212ENST00000616140 USP17L23D6RBM5 183 aa10.14□□□□□ -0.79
CPSF1-212ENST00000616140 C3orf22Q8N5N4 141 aa10.14□□□□□ -0.79
CPSF1-212ENST00000616140 LY6G6DO95868 133 aa10.14□□□□□ -0.79
CPSF1-212ENST00000616140 FAM19A5Q7Z5A7 132 aaPredicted RBP10.13□□□□□ -0.79
CPSF1-212ENST00000616140 LELP1Q5T871 98 aa10.13□□□□□ -0.79
CPSF1-212ENST00000616140 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.13□□□□□ -0.79
CPSF1-212ENST00000616140 C3orf84H3BNL1 204 aa10.13□□□□□ -0.79
CPSF1-212ENST00000616140 IMUPQ9GZP8 106 aa10.13□□□□□ -0.79
CPSF1-212ENST00000616140 LINC00694P0DN24 101 aa10.13□□□□□ -0.79
CPSF1-212ENST00000616140 CLUHP3Q96NS8 147 aa10.13□□□□□ -0.79
CPSF1-212ENST00000616140 B9D2Q9BPU9 175 aa10.13□□□□□ -0.79
CPSF1-212ENST00000616140 CHKB-CPT1BH3BT56 60 aa10.12□□□□□ -0.79
CPSF1-212ENST00000616140 C14orf177Q52M58 125 aa10.12□□□□□ -0.79
CPSF1-212ENST00000616140 A0A087WZ39 114 aa10.11□□□□□ -0.79
CPSF1-212ENST00000616140 CHCHD7Q9BUK0 85 aa10.11□□□□□ -0.79
CPSF1-212ENST00000616140 ADAMTSL4-AS1Q5T5F5 129 aa10.11□□□□□ -0.79
CPSF1-212ENST00000616140 Q8IZM0 81 aa10.11□□□□□ -0.79
CPSF1-212ENST00000616140 KIR2DL5BQ8NHK3 375 aa10.11□□□□□ -0.79
CPSF1-212ENST00000616140 COL5A1P20908 1838 aaPredicted RBP10.11□□□□□ -0.79
CPSF1-212ENST00000616140 CYSRT1A8MQ03 144 aa10.1□□□□□ -0.79
CPSF1-212ENST00000616140 FAM236DA0A1B0GTK5 79 aa10.09□□□□□ -0.79
CPSF1-212ENST00000616140 FAM236CP0DP71 79 aa10.09□□□□□ -0.79
CPSF1-212ENST00000616140 SERP2Q8N6R1 65 aa10.09□□□□□ -0.79
CPSF1-212ENST00000616140 COX6A2Q02221 97 aa10.09□□□□□ -0.79
CPSF1-212ENST00000616140 IGLV4-60A0A075B6I1 120 aa10.09□□□□□ -0.79
CPSF1-212ENST00000616140 ATRQ13535 2644 aa10.09□□□□□ -0.79
CPSF1-212ENST00000616140 CCDC179H3BU77 68 aa10.09□□□□□ -0.79
CPSF1-212ENST00000616140 UNQ6190/PRO20217Q6UXQ8 127 aa10.09□□□□□ -0.79
CPSF1-212ENST00000616140 C4orf48Q5BLP8 95 aa10.08□□□□□ -0.8
CPSF1-212ENST00000616140 AMELXQ99217 191 aa10.08□□□□□ -0.8
CPSF1-212ENST00000616140 MGAM2Q2M2H8 2515 aa10.08□□□□□ -0.8
CPSF1-212ENST00000616140 BRI3O95415 125 aa10.08□□□□□ -0.8
CPSF1-212ENST00000616140 NDUFC2O95298 119 aa10.08□□□□□ -0.8
CPSF1-212ENST00000616140 SHISA2Q6UWI4 295 aa10.08□□□□□ -0.8
CPSF1-212ENST00000616140 M0R378 163 aa10.07□□□□□ -0.8
CPSF1-212ENST00000616140 OXLD1Q5BKU9 147 aa10.07□□□□□ -0.8
CPSF1-212ENST00000616140 IGLV1-51P01701 117 aa10.07□□□□□ -0.8
CPSF1-212ENST00000616140 C9orf116Q5BN46 136 aaPredicted RBP10.07□□□□□ -0.8
CPSF1-212ENST00000616140 BRK1Q8WUW1 75 aa10.07□□□□□ -0.8
CPSF1-212ENST00000616140 ZNF73O43830 326 aaPredicted RBP10.07□□□□□ -0.8
CPSF1-212ENST00000616140 SMR3AQ99954 134 aa10.07□□□□□ -0.8
CPSF1-212ENST00000616140 IGKV4-1P06312 121 aa10.06□□□□□ -0.8
CPSF1-212ENST00000616140 CENPEQ02224 2701 aa10.06□□□□□ -0.8
CPSF1-212ENST00000616140 Q6ZSN1 163 aa10.06□□□□□ -0.8
CPSF1-212ENST00000616140 TRAV10A0A0B4J240 114 aa10.05□□□□□ -0.8
CPSF1-212ENST00000616140 COX17Q14061 63 aa10.05□□□□□ -0.8
CPSF1-212ENST00000616140 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.05□□□□□ -0.8
CPSF1-212ENST00000616140 IGHV4-30-4P0DP06 118 aa10.05□□□□□ -0.8
CPSF1-212ENST00000616140 MPLKIPQ8TAP9 179 aa10.05□□□□□ -0.8
CPSF1-212ENST00000616140 PRR3P79522 188 aaKnown RBP10.05□□□□□ -0.8
CPSF1-212ENST00000616140 FAM240AA0A1B0GVK7 77 aa10.04□□□□□ -0.8
CPSF1-212ENST00000616140 COX7CP15954 63 aa10.04□□□□□ -0.8
CPSF1-212ENST00000616140 NTM-AS1Q6ZSK4 140 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 1251.1 ms