RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 CCL18P55774 89 aa6.41□□□□□ -1.38
PDLIM5-222ENST00000615540 MRPS36P82909 103 aaKnown RBP6.41□□□□□ -1.38
PDLIM5-222ENST00000615540 RMI2Q96E14 147 aa6.41□□□□□ -1.38
PDLIM5-222ENST00000615540 SPG11Q96JI7 2443 aa6.41□□□□□ -1.38
PDLIM5-222ENST00000615540 SPTBN4Q9H254 2564 aa6.41□□□□□ -1.38
PDLIM5-222ENST00000615540 IGLV4-60A0A075B6I1 120 aa6.4□□□□□ -1.38
PDLIM5-222ENST00000615540 SPANXDQ9BXN6 97 aa6.4□□□□□ -1.38
PDLIM5-222ENST00000615540 SPANXCQ9NY87 97 aa6.4□□□□□ -1.38
PDLIM5-222ENST00000615540 LINC00959A0A1B0GUT2 108 aa6.4□□□□□ -1.38
PDLIM5-222ENST00000615540 RBX1P62877 108 aa6.4□□□□□ -1.38
PDLIM5-222ENST00000615540 CDC42SE2Q9NRR3 84 aa6.4□□□□□ -1.38
PDLIM5-222ENST00000615540 Q9UF83 564 aa6.4□□□□□ -1.38
PDLIM5-222ENST00000615540 WNK1Q9H4A3 2382 aa6.4□□□□□ -1.38
PDLIM5-222ENST00000615540 LINC01546A6NGU7 62 aa6.4□□□□□ -1.38
PDLIM5-222ENST00000615540 ADAMTSL4-AS1Q5T5F5 129 aa6.4□□□□□ -1.38
PDLIM5-222ENST00000615540 KIF25-AS1Q9Y6Z4 181 aa6.4□□□□□ -1.38
PDLIM5-222ENST00000615540 MT-ATP8P03928 68 aa6.4□□□□□ -1.39
PDLIM5-222ENST00000615540 IGHV4-30-4P0DP06 118 aa6.4□□□□□ -1.39
PDLIM5-222ENST00000615540 DEFB131BA0A096LNP1 70 aa6.4□□□□□ -1.39
PDLIM5-222ENST00000615540 NANOS2P60321 138 aaKnown RBP6.4□□□□□ -1.39
PDLIM5-222ENST00000615540 FHL2Q14192 279 aa6.39□□□□□ -1.39
PDLIM5-222ENST00000615540 UBE2BP63146 152 aa6.39□□□□□ -1.39
PDLIM5-222ENST00000615540 Q8N2B8 174 aa6.39□□□□□ -1.39
PDLIM5-222ENST00000615540 A0A0J9YWU9 116 aa6.39□□□□□ -1.39
PDLIM5-222ENST00000615540 LINC00242Q5T6M2 205 aa6.39□□□□□ -1.39
PDLIM5-222ENST00000615540 MIFP14174 115 aa6.39□□□□□ -1.39
PDLIM5-222ENST00000615540 C9orf153Q5TBE3 101 aa6.38□□□□□ -1.39
PDLIM5-222ENST00000615540 LINC00315P59091 139 aa6.38□□□□□ -1.39
PDLIM5-222ENST00000615540 UBL5Q9BZL1 73 aa6.38□□□□□ -1.39
PDLIM5-222ENST00000615540 XAGE1AQ9HD64 81 aa6.38□□□□□ -1.39
PDLIM5-222ENST00000615540 CEP295Q9C0D2 2601 aa6.38□□□□□ -1.39
PDLIM5-222ENST00000615540 PTPN13Q12923 2485 aa6.38□□□□□ -1.39
PDLIM5-222ENST00000615540 CXCL5P42830 114 aa6.38□□□□□ -1.39
PDLIM5-222ENST00000615540 C11orf72Q8NBR9 251 aa6.38□□□□□ -1.39
PDLIM5-222ENST00000615540 TMEM126AQ9H061 195 aa6.38□□□□□ -1.39
PDLIM5-222ENST00000615540 TACC2O95359 2948 aa6.38□□□□□ -1.39
PDLIM5-222ENST00000615540 H0YGX0 51 aa6.37□□□□□ -1.39
PDLIM5-222ENST00000615540 C9orf116Q5BN46 136 aaPredicted RBP6.37□□□□□ -1.39
PDLIM5-222ENST00000615540 SS18L2Q9UHA2 77 aa6.37□□□□□ -1.39
PDLIM5-222ENST00000615540 TRBV30A0A0K0K1B3 111 aa6.36□□□□□ -1.39
PDLIM5-222ENST00000615540 AMELXQ99217 191 aa6.36□□□□□ -1.39
PDLIM5-222ENST00000615540 SMIM1B2RUZ4 78 aa6.36□□□□□ -1.39
PDLIM5-222ENST00000615540 KPRPQ5T749 579 aaPredicted RBP6.36□□□□□ -1.39
PDLIM5-222ENST00000615540 ETDCA0A1B0GVM5 59 aa6.35□□□□□ -1.39
PDLIM5-222ENST00000615540 ZZEF1O43149 2961 aa6.35□□□□□ -1.39
PDLIM5-222ENST00000615540 PRR3P79522 188 aaKnown RBP6.35□□□□□ -1.39
PDLIM5-222ENST00000615540 DIRC1Q969H9 104 aa6.35□□□□□ -1.39
PDLIM5-222ENST00000615540 IGKV2-24A0A0C4DH68 120 aa6.35□□□□□ -1.39
PDLIM5-222ENST00000615540 BEAN1Q3B7T3 259 aa6.35□□□□□ -1.39
PDLIM5-222ENST00000615540 UFSP1Q6NVU6 142 aa6.35□□□□□ -1.39
PDLIM5-222ENST00000615540 FAM236AA0A1B0GUQ0 79 aa6.35□□□□□ -1.39
PDLIM5-222ENST00000615540 FAM236BA0A1B0GV22 79 aa6.35□□□□□ -1.39
PDLIM5-222ENST00000615540 SMIM11BQ8TCY0 68 aa6.35□□□□□ -1.39
PDLIM5-222ENST00000615540 CELA1Q9UNI1 258 aa6.35□□□□□ -1.39
PDLIM5-222ENST00000615540 IBA57-AS1B1ANH7 110 aa6.34□□□□□ -1.39
PDLIM5-222ENST00000615540 H3BT86 120 aa6.34□□□□□ -1.39
PDLIM5-222ENST00000615540 TRACP01848 142 aa6.34□□□□□ -1.39
PDLIM5-222ENST00000615540 C6orf223Q8N319 242 aa6.33□□□□□ -1.4
PDLIM5-222ENST00000615540 SHISA2Q6UWI4 295 aa6.33□□□□□ -1.4
PDLIM5-222ENST00000615540 B5MCH6 92 aa6.33□□□□□ -1.4
PDLIM5-222ENST00000615540 CD164L2Q6UWJ8 174 aa6.33□□□□□ -1.4
PDLIM5-222ENST00000615540 ANKRD11Q6UB99 2663 aaPredicted RBP6.33□□□□□ -1.4
PDLIM5-222ENST00000615540 hADV29S1A0JD25 119 aa6.33□□□□□ -1.4
PDLIM5-222ENST00000615540 FAM19A5Q7Z5A7 132 aaPredicted RBP6.33□□□□□ -1.4
PDLIM5-222ENST00000615540 MAP1AP78559 2803 aaPredicted RBP6.33□□□□□ -1.4
PDLIM5-222ENST00000615540 COX7BP24311 80 aa6.32□□□□□ -1.4
PDLIM5-222ENST00000615540 TIMM17BO60830 172 aa6.32□□□□□ -1.4
PDLIM5-222ENST00000615540 ACYP1P07311 99 aa6.32□□□□□ -1.4
PDLIM5-222ENST00000615540 SDIM1Q6ZPB5 146 aa6.32□□□□□ -1.4
PDLIM5-222ENST00000615540 NOTCH3Q9UM47 2321 aa6.32□□□□□ -1.4
PDLIM5-222ENST00000615540 IGKV2-28A0A075B6P5 120 aa6.32□□□□□ -1.4
PDLIM5-222ENST00000615540 IGKV2D-28P01615 120 aa6.32□□□□□ -1.4
PDLIM5-222ENST00000615540 LELP1Q5T871 98 aa6.32□□□□□ -1.4
PDLIM5-222ENST00000615540 KIR2DL5BQ8NHK3 375 aa6.32□□□□□ -1.4
PDLIM5-222ENST00000615540 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.31□□□□□ -1.4
PDLIM5-222ENST00000615540 SPATA25Q9BR10 227 aa6.31□□□□□ -1.4
PDLIM5-222ENST00000615540 NTM-AS1Q6ZSK4 140 aa6.31□□□□□ -1.4
PDLIM5-222ENST00000615540 A0A087WYN8 130 aa6.31□□□□□ -1.4
PDLIM5-222ENST00000615540 A0A096LNT2 108 aa6.31□□□□□ -1.4
PDLIM5-222ENST00000615540 Q8N3U1 123 aa6.31□□□□□ -1.4
PDLIM5-222ENST00000615540 FSHBP01225 129 aa6.3□□□□□ -1.4
PDLIM5-222ENST00000615540 Q6ZTC4 211 aa6.3□□□□□ -1.4
PDLIM5-222ENST00000615540 CDK2AP2O75956 126 aa6.3□□□□□ -1.4
PDLIM5-222ENST00000615540 C6orf99Q4VX62 202 aa6.3□□□□□ -1.4
PDLIM5-222ENST00000615540 HIVEP3Q5T1R4 2406 aa6.3□□□□□ -1.4
PDLIM5-222ENST00000615540 TLN1Q9Y490 2541 aaKnown RBP6.3□□□□□ -1.4
PDLIM5-222ENST00000615540 TMEM256-PLSCR3K7ERE1 68 aa6.3□□□□□ -1.4
PDLIM5-222ENST00000615540 LST1O00453 97 aa6.3□□□□□ -1.4
PDLIM5-222ENST00000615540 RBM3P98179 157 aaKnown RBP6.3□□□□□ -1.4
PDLIM5-222ENST00000615540 KLK9Q2XQG4 91 aa6.3□□□□□ -1.4
PDLIM5-222ENST00000615540 CSPG4Q6UVK1 2322 aa6.3□□□□□ -1.4
PDLIM5-222ENST00000615540 UTP20O75691 2785 aaKnown RBP6.3□□□□□ -1.4
PDLIM5-222ENST00000615540 RPL37AP8A6NKH3 93 aa6.3□□□□□ -1.4
PDLIM5-222ENST00000615540 UNQ6190/PRO20217Q6UXQ8 127 aa6.3□□□□□ -1.4
PDLIM5-222ENST00000615540 CELSR1Q9NYQ6 3014 aa6.29□□□□□ -1.4
PDLIM5-222ENST00000615540 SCXQ7RTU7 201 aa6.29□□□□□ -1.4
PDLIM5-222ENST00000615540 FHL3Q13643 280 aa6.29□□□□□ -1.4
PDLIM5-222ENST00000615540 M0R2N4 97 aa6.29□□□□□ -1.4
PDLIM5-222ENST00000615540 RNF183Q96D59 192 aa6.29□□□□□ -1.4
PDLIM5-222ENST00000615540 CYSRT1A8MQ03 144 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms