RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 DEFB130AP0DP74 79 aa10.03□□□□□ -0.8
COL6A1-207ENST00000612273 PFN2P35080 140 aa10.03□□□□□ -0.8
COL6A1-207ENST00000612273 HERVK_113P63121 156 aa10.03□□□□□ -0.8
COL6A1-207ENST00000612273 CLPSL2Q6UWE3 100 aa10.03□□□□□ -0.8
COL6A1-207ENST00000612273 HELZ2Q9BYK8 2649 aaKnown RBP10.03□□□□□ -0.8
COL6A1-207ENST00000612273 LST1O00453 97 aa10.02□□□□□ -0.8
COL6A1-207ENST00000612273 DEFB113Q30KQ7 82 aa10.02□□□□□ -0.8
COL6A1-207ENST00000612273 C5orf38Q86SI9 138 aa10.02□□□□□ -0.81
COL6A1-207ENST00000612273 VWFP04275 2813 aa10.02□□□□□ -0.81
COL6A1-207ENST00000612273 TRGV4A0A0C4DH28 118 aa10.02□□□□□ -0.81
COL6A1-207ENST00000612273 BEAN1Q3B7T3 259 aa10.01□□□□□ -0.81
COL6A1-207ENST00000612273 CHCHD5Q9BSY4 110 aa10.01□□□□□ -0.81
COL6A1-207ENST00000612273 DNAJC9-AS1A6NH13 148 aa10.01□□□□□ -0.81
COL6A1-207ENST00000612273 CCDC179H3BU77 68 aa10.01□□□□□ -0.81
COL6A1-207ENST00000612273 LINC00158P58513 81 aa10.01□□□□□ -0.81
COL6A1-207ENST00000612273 RNF152Q8N8N0 203 aa10.01□□□□□ -0.81
COL6A1-207ENST00000612273 DNAJC30Q96LL9 226 aa10.01□□□□□ -0.81
COL6A1-207ENST00000612273 CITED1Q99966 193 aa10.01□□□□□ -0.81
COL6A1-207ENST00000612273 FSHBP01225 129 aa10□□□□□ -0.81
COL6A1-207ENST00000612273 NDUFV3P56181 108 aaKnown RBP10□□□□□ -0.81
COL6A1-207ENST00000612273 ESM1Q9NQ30 184 aa10□□□□□ -0.81
COL6A1-207ENST00000612273 NHLRC4P0CG21 123 aaPredicted RBP10□□□□□ -0.81
COL6A1-207ENST00000612273 TIRAPP58753 221 aa9.99□□□□□ -0.81
COL6A1-207ENST00000612273 MIR7-3HGQ8N6C7 128 aa9.99□□□□□ -0.81
COL6A1-207ENST00000612273 CDC42SE2Q9NRR3 84 aa9.99□□□□□ -0.81
COL6A1-207ENST00000612273 TMEM243Q9BU79 118 aa9.99□□□□□ -0.81
COL6A1-207ENST00000612273 IGLV4-60A0A075B6I1 120 aa9.98□□□□□ -0.81
COL6A1-207ENST00000612273 IFITM1P13164 125 aa9.98□□□□□ -0.81
COL6A1-207ENST00000612273 FAM218AQ96MZ4 157 aa9.98□□□□□ -0.81
COL6A1-207ENST00000612273 OR13C6PQ8NH95 151 aa9.98□□□□□ -0.81
COL6A1-207ENST00000612273 EDA2RQ9HAV5 297 aa9.97□□□□□ -0.81
COL6A1-207ENST00000612273 ATP5G1P05496 136 aa9.97□□□□□ -0.81
COL6A1-207ENST00000612273 H3BT86 120 aa9.97□□□□□ -0.81
COL6A1-207ENST00000612273 DAZ2Q13117 558 aaKnown RBP9.97□□□□□ -0.81
COL6A1-207ENST00000612273 DAZ4Q86SG3 579 aaKnown RBP9.97□□□□□ -0.81
COL6A1-207ENST00000612273 DAZ3Q9NR90 486 aaKnown RBP9.97□□□□□ -0.81
COL6A1-207ENST00000612273 A8MTW9 85 aa9.96□□□□□ -0.81
COL6A1-207ENST00000612273 BAALC-AS2P0C853 105 aa9.96□□□□□ -0.81
COL6A1-207ENST00000612273 TENM4Q6N022 2769 aa9.96□□□□□ -0.82
COL6A1-207ENST00000612273 IGLV5-39A0A0G2JS06 123 aa9.96□□□□□ -0.82
COL6A1-207ENST00000612273 ATRQ13535 2644 aa9.95□□□□□ -0.82
COL6A1-207ENST00000612273 IGLV5-45A0A087WSX0 123 aa9.95□□□□□ -0.82
COL6A1-207ENST00000612273 DEFB4AO15263 64 aa9.95□□□□□ -0.82
COL6A1-207ENST00000612273 COX7A2LO14548 114 aa9.94□□□□□ -0.82
COL6A1-207ENST00000612273 GIG44P09565 113 aaPredicted RBP9.94□□□□□ -0.82
COL6A1-207ENST00000612273 XCL1P47992 114 aa9.94□□□□□ -0.82
COL6A1-207ENST00000612273 F5H768 121 aa9.94□□□□□ -0.82
COL6A1-207ENST00000612273 GAGE2AQ6NT46 116 aa9.94□□□□□ -0.82
COL6A1-207ENST00000612273 SND1-IT1Q9HBX3 110 aa9.94□□□□□ -0.82
COL6A1-207ENST00000612273 PAX4O43316 350 aa9.93□□□□□ -0.82
COL6A1-207ENST00000612273 TIMM17BO60830 172 aa9.93□□□□□ -0.82
COL6A1-207ENST00000612273 CRPP02741 224 aa9.93□□□□□ -0.82
COL6A1-207ENST00000612273 ZNF843Q8N446 348 aa9.93□□□□□ -0.82
COL6A1-207ENST00000612273 LINC00337Q8N6G1 96 aa9.92□□□□□ -0.82
COL6A1-207ENST00000612273 SLPIP03973 132 aa9.92□□□□□ -0.82
COL6A1-207ENST00000612273 COX7B2Q8TF08 81 aa9.92□□□□□ -0.82
COL6A1-207ENST00000612273 LINC01006Q8NI28 216 aa9.91□□□□□ -0.82
COL6A1-207ENST00000612273 TRBV10-1A0A0K0K1A3 114 aa9.91□□□□□ -0.82
COL6A1-207ENST00000612273 IGLV10-54A0A075B6I4 117 aa9.9□□□□□ -0.82
COL6A1-207ENST00000612273 UNC79Q9P2D8 2635 aa9.9□□□□□ -0.82
COL6A1-207ENST00000612273 FAM236AA0A1B0GUQ0 79 aa9.9□□□□□ -0.82
COL6A1-207ENST00000612273 FAM236BA0A1B0GV22 79 aa9.9□□□□□ -0.82
COL6A1-207ENST00000612273 PRR3P79522 188 aaKnown RBP9.9□□□□□ -0.82
COL6A1-207ENST00000612273 M0QXV9 152 aa9.89□□□□□ -0.83
COL6A1-207ENST00000612273 RNASE1P07998 156 aaKnown RBP9.89□□□□□ -0.83
COL6A1-207ENST00000612273 C6orf226Q5I0X4 101 aa9.89□□□□□ -0.83
COL6A1-207ENST00000612273 C9orf129Q5T035 196 aaKnown RBP9.89□□□□□ -0.83
COL6A1-207ENST00000612273 SMCR5Q8TEV8 140 aa9.89□□□□□ -0.83
COL6A1-207ENST00000612273 A0A087WYN8 130 aa9.89□□□□□ -0.83
COL6A1-207ENST00000612273 PLAC8L1A1L4L8 177 aa9.88□□□□□ -0.83
COL6A1-207ENST00000612273 DNAL4O96015 105 aa9.88□□□□□ -0.83
COL6A1-207ENST00000612273 SHISA2Q6UWI4 295 aa9.88□□□□□ -0.83
COL6A1-207ENST00000612273 KRTAP1-3Q8IUG1 177 aa9.88□□□□□ -0.83
COL6A1-207ENST00000612273 SMR3AQ99954 134 aa9.88□□□□□ -0.83
COL6A1-207ENST00000612273 SMIM11BQ8TCY0 68 aa9.88□□□□□ -0.83
COL6A1-207ENST00000612273 IGKV2-28A0A075B6P5 120 aa9.87□□□□□ -0.83
COL6A1-207ENST00000612273 IGKV2D-28P01615 120 aa9.87□□□□□ -0.83
COL6A1-207ENST00000612273 CCL18P55774 89 aa9.87□□□□□ -0.83
COL6A1-207ENST00000612273 Q8N3U1 123 aa9.87□□□□□ -0.83
COL6A1-207ENST00000612273 C14orf132Q9NPU4 83 aa9.87□□□□□ -0.83
COL6A1-207ENST00000612273 TEP1Q99973 2627 aaKnown RBP9.87□□□□□ -0.83
COL6A1-207ENST00000612273 TRBV6-8A0A0A6YYG3 113 aa9.87□□□□□ -0.83
COL6A1-207ENST00000612273 IL17DQ8TAD2 202 aa9.87□□□□□ -0.83
COL6A1-207ENST00000612273 TENM1Q9UKZ4 2725 aa9.86□□□□□ -0.83
COL6A1-207ENST00000612273 LECT2O14960 151 aa9.86□□□□□ -0.83
COL6A1-207ENST00000612273 GYPEP15421 78 aa9.86□□□□□ -0.83
COL6A1-207ENST00000612273 C16orf74Q96GX8 76 aa9.86□□□□□ -0.83
COL6A1-207ENST00000612273 HERV-K104P63124 156 aa9.85□□□□□ -0.83
COL6A1-207ENST00000612273 LINC00482Q8N8I6 264 aa9.85□□□□□ -0.83
COL6A1-207ENST00000612273 CSDC2Q9Y534 153 aaKnown RBP9.85□□□□□ -0.83
COL6A1-207ENST00000612273 TRAV25A0A0B4J276 109 aa9.85□□□□□ -0.83
COL6A1-207ENST00000612273 FHL2Q14192 279 aa9.85□□□□□ -0.83
COL6A1-207ENST00000612273 COPS9Q8WXC6 57 aa9.84□□□□□ -0.83
COL6A1-207ENST00000612273 LINC00526Q96FQ7 95 aa9.84□□□□□ -0.83
COL6A1-207ENST00000612273 SMIM20Q8N5G0 67 aa9.84□□□□□ -0.83
COL6A1-207ENST00000612273 HTN3P15516 51 aa9.83□□□□□ -0.84
COL6A1-207ENST00000612273 TRAV13-2A0A0B4J235 113 aa9.83□□□□□ -0.84
COL6A1-207ENST00000612273 IGHV3OR16-9A0A0B4J2B5 98 aa9.83□□□□□ -0.84
COL6A1-207ENST00000612273 IGKV3D-7A0A0C4DH55 119 aa9.83□□□□□ -0.84
COL6A1-207ENST00000612273 NCR3O14931 201 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms