RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ZNF19P17023 458 aa2.47□□□□□ -2.01
LINC00540-201ENST00000611481 KRTAP19-2Q3LHN2 52 aa2.47□□□□□ -2.01
LINC00540-201ENST00000611481 Q6ZQT7 251 aa2.47□□□□□ -2.01
LINC00540-201ENST00000611481 PACRGLQ8N7B6 248 aa2.47□□□□□ -2.01
LINC00540-201ENST00000611481 RETNLBQ9BQ08 111 aa2.47□□□□□ -2.01
LINC00540-201ENST00000611481 VPS25Q9BRG1 176 aa2.47□□□□□ -2.01
LINC00540-201ENST00000611481 SEC22CQ9BRL7 303 aa2.47□□□□□ -2.01
LINC00540-201ENST00000611481 MRPL32Q9BYC8 188 aaKnown RBP2.47□□□□□ -2.01
LINC00540-201ENST00000611481 TAS2R8Q9NYW2 309 aa2.47□□□□□ -2.01
LINC00540-201ENST00000611481 MRPL36Q9P0J6 103 aaKnown RBP2.47□□□□□ -2.01
LINC00540-201ENST00000611481 CKLFQ9UBR5 152 aa2.47□□□□□ -2.01
LINC00540-201ENST00000611481 TRAV1-1A0A0B4J248 108 aa2.46□□□□□ -2.02
LINC00540-201ENST00000611481 MUC21A0A0G2JKD1 596 aa2.46□□□□□ -2.02
LINC00540-201ENST00000611481 TMEM212A6NML5 194 aa2.46□□□□□ -2.02
LINC00540-201ENST00000611481 A8MUU9 505 aa2.46□□□□□ -2.02
LINC00540-201ENST00000611481 GGTLC3B5MD39 225 aa2.46□□□□□ -2.02
LINC00540-201ENST00000611481 TRGC2P03986 189 aa2.46□□□□□ -2.02
LINC00540-201ENST00000611481 UBBP0CG47 229 aa2.46□□□□□ -2.02
LINC00540-201ENST00000611481 S100A4P26447 101 aaKnown RBP2.46□□□□□ -2.02
LINC00540-201ENST00000611481 ZNF80P51504 273 aaPredicted RBP2.46□□□□□ -2.02
LINC00540-201ENST00000611481 TAS2R30P59541 319 aa2.46□□□□□ -2.02
LINC00540-201ENST00000611481 AKR1C1Q04828 323 aa2.46□□□□□ -2.02
LINC00540-201ENST00000611481 TPRXLQ17RH7 258 aa2.46□□□□□ -2.02
LINC00540-201ENST00000611481 ASB16-AS1Q495Z4 193 aa2.46□□□□□ -2.02
LINC00540-201ENST00000611481 PRR15Q8IV56 129 aa2.46□□□□□ -2.02
LINC00540-201ENST00000611481 OR8I2Q8N0Y5 310 aa2.46□□□□□ -2.02
LINC00540-201ENST00000611481 TMEM229BQ8NBD8 167 aa2.46□□□□□ -2.02
LINC00540-201ENST00000611481 CANT1Q8WVQ1 401 aa2.46□□□□□ -2.02
LINC00540-201ENST00000611481 MGLLQ99685 303 aa2.46□□□□□ -2.02
LINC00540-201ENST00000611481 A0A0B4J2C4 111 aa2.45□□□□□ -2.02
LINC00540-201ENST00000611481 TAX1BP3O14907 124 aa2.45□□□□□ -2.02
LINC00540-201ENST00000611481 LEPROTO15243 131 aa2.45□□□□□ -2.02
LINC00540-201ENST00000611481 IGKV1-17P01599 117 aa2.45□□□□□ -2.02
LINC00540-201ENST00000611481 IL4P05112 153 aa2.45□□□□□ -2.02
LINC00540-201ENST00000611481 S100A11P31949 105 aa2.45□□□□□ -2.02
LINC00540-201ENST00000611481 YPEL3P61236 119 aaPredicted RBP2.45□□□□□ -2.02
LINC00540-201ENST00000611481 HIST1H1AQ02539 215 aaPredicted RBP2.45□□□□□ -2.02
LINC00540-201ENST00000611481 OR5C1Q8NGR4 320 aa2.45□□□□□ -2.02
LINC00540-201ENST00000611481 SLC25A21Q9BQT8 299 aaPredicted RBP2.45□□□□□ -2.02
LINC00540-201ENST00000611481 SAR1AQ9NR31 198 aa2.45□□□□□ -2.02
LINC00540-201ENST00000611481 SLC39A9Q9NUM3 307 aa2.45□□□□□ -2.02
LINC00540-201ENST00000611481 MRPL16Q9NX20 251 aaKnown RBP2.45□□□□□ -2.02
LINC00540-201ENST00000611481 A0A1B0GV90 55 aa2.44□□□□□ -2.02
LINC00540-201ENST00000611481 IRGMA1A4Y4 181 aa2.44□□□□□ -2.02
LINC00540-201ENST00000611481 FABP5P3A8MUU1 101 aa2.44□□□□□ -2.02
LINC00540-201ENST00000611481 LINC00587B1AMM8 73 aa2.44□□□□□ -2.02
LINC00540-201ENST00000611481 H3BQ85 93 aa2.44□□□□□ -2.02
LINC00540-201ENST00000611481 SPINK4O60575 86 aa2.44□□□□□ -2.02
LINC00540-201ENST00000611481 NPYP01303 97 aa2.44□□□□□ -2.02
LINC00540-201ENST00000611481 SFTA3P0C7M3 94 aa2.44□□□□□ -2.02
LINC00540-201ENST00000611481 UBE2D1P51668 147 aa2.44□□□□□ -2.02
LINC00540-201ENST00000611481 MEF2BQ02080 365 aaPredicted RBP2.44□□□□□ -2.02
LINC00540-201ENST00000611481 EIF4EBP1Q13541 118 aaPredicted RBP2.44□□□□□ -2.02
LINC00540-201ENST00000611481 HRCT1Q6UXD1 115 aa2.44□□□□□ -2.02
LINC00540-201ENST00000611481 ZFP2Q6ZN57 461 aa2.44□□□□□ -2.02
LINC00540-201ENST00000611481 LHFPL1Q86WI0 220 aa2.44□□□□□ -2.02
LINC00540-201ENST00000611481 ST20-AS1Q8NBB2 130 aa2.44□□□□□ -2.02
LINC00540-201ENST00000611481 C2orf88Q9BSF0 95 aa2.44□□□□□ -2.02
LINC00540-201ENST00000611481 LCE3DQ9BYE3 92 aa2.44□□□□□ -2.02
LINC00540-201ENST00000611481 SMDT1Q9H4I9 107 aa2.44□□□□□ -2.02
LINC00540-201ENST00000611481 IGHV3-64A0A075B6Q5 118 aa2.43□□□□□ -2.02
LINC00540-201ENST00000611481 IGKV1D-37A0A075B6S9 117 aa2.43□□□□□ -2.02
LINC00540-201ENST00000611481 IGKV2-24A0A0C4DH68 120 aa2.43□□□□□ -2.02
LINC00540-201ENST00000611481 A0A0G2JND7 137 aa2.43□□□□□ -2.02
LINC00540-201ENST00000611481 C1orf196B1AJZ1 125 aa2.43□□□□□ -2.02
LINC00540-201ENST00000611481 C9JAW5 83 aa2.43□□□□□ -2.02
LINC00540-201ENST00000611481 GABARAPH6UMI1 98 aa2.43□□□□□ -2.02
LINC00540-201ENST00000611481 SNAPC5O75971 98 aa2.43□□□□□ -2.02
LINC00540-201ENST00000611481 UCHL1P09936 223 aa2.43□□□□□ -2.02
LINC00540-201ENST00000611481 KRTAP2-3P0C7H8 128 aa2.43□□□□□ -2.02
LINC00540-201ENST00000611481 LINC01554Q52M75 96 aa2.43□□□□□ -2.02
LINC00540-201ENST00000611481 RNF182Q8N6D2 247 aa2.43□□□□□ -2.02
LINC00540-201ENST00000611481 CARD19Q96LW7 228 aa2.43□□□□□ -2.02
LINC00540-201ENST00000611481 KRTAP2-4Q9BYR9 128 aa2.43□□□□□ -2.02
LINC00540-201ENST00000611481 TTTY13Q9BZ97 58 aa2.43□□□□□ -2.02
LINC00540-201ENST00000611481 LINC00846Q9NV44 126 aa2.43□□□□□ -2.02
LINC00540-201ENST00000611481 HIGD1AQ9Y241 93 aa2.43□□□□□ -2.02
LINC00540-201ENST00000611481 TRAV30A0A087WSZ9 112 aa2.42□□□□□ -2.02
LINC00540-201ENST00000611481 TRAV12-3A0A0B4J271 114 aa2.42□□□□□ -2.02
LINC00540-201ENST00000611481 F8W036 122 aa2.42□□□□□ -2.02
LINC00540-201ENST00000611481 M0R378 163 aa2.42□□□□□ -2.02
LINC00540-201ENST00000611481 DLEU1O43261 78 aa2.42□□□□□ -2.02
LINC00540-201ENST00000611481 EDF1O60869 148 aaKnown RBP2.42□□□□□ -2.02
LINC00540-201ENST00000611481 DPM2O94777 84 aa2.42□□□□□ -2.02
LINC00540-201ENST00000611481 CDS2O95674 445 aa2.42□□□□□ -2.02
LINC00540-201ENST00000611481 IGLC1P0CG04 106 aa2.42□□□□□ -2.02
LINC00540-201ENST00000611481 NFYAP23511 347 aaPredicted RBP2.42□□□□□ -2.02
LINC00540-201ENST00000611481 EIF5AP63241 154 aaKnown RBP2.42□□□□□ -2.02
LINC00540-201ENST00000611481 TCTE3Q8IZS6 198 aa2.42□□□□□ -2.02
LINC00540-201ENST00000611481 TERB2Q8NHR7 220 aa2.42□□□□□ -2.02
LINC00540-201ENST00000611481 SMCR5Q8TEV8 140 aa2.42□□□□□ -2.02
LINC00540-201ENST00000611481 ARHGAP5-AS1Q96IT6 56 aa2.42□□□□□ -2.02
LINC00540-201ENST00000611481 MIEN1Q9BRT3 115 aa2.42□□□□□ -2.02
LINC00540-201ENST00000611481 KLK12Q9UKR0 248 aa2.42□□□□□ -2.02
LINC00540-201ENST00000611481 U3KQ87 197 aa2.42□□□□□ -2.02
LINC00540-201ENST00000611481 IGHV3-73A0A0B4J1V6 119 aa2.41□□□□□ -2.02
LINC00540-201ENST00000611481 C19orf71A6NCJ1 209 aa2.41□□□□□ -2.02
LINC00540-201ENST00000611481 CCDC160A6NGH7 325 aa2.41□□□□□ -2.02
LINC00540-201ENST00000611481 TMEM256-PLSCR3K7ERE1 68 aa2.41□□□□□ -2.02
LINC00540-201ENST00000611481 LGALS3P17931 250 aaKnown RBP2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms