RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 IBA57-AS1B1ANH7 110 aa6.32□□□□□ -1.4
TRIM28-208ENST00000597172 SYS1-DBNDD2H3BUS1 97 aa6.32□□□□□ -1.4
TRIM28-208ENST00000597172 REG3AQ06141 175 aa6.32□□□□□ -1.4
TRIM28-208ENST00000597172 PMVKQ15126 192 aa6.32□□□□□ -1.4
TRIM28-208ENST00000597172 Q6ZN92 141 aa6.32□□□□□ -1.4
TRIM28-208ENST00000597172 KRTAP9-2Q9BYQ4 174 aa6.32□□□□□ -1.4
TRIM28-208ENST00000597172 TRAV12-1A0A0B4J245 112 aa6.31□□□□□ -1.4
TRIM28-208ENST00000597172 IGKV3OR2-268A0A0C4DH90 116 aa6.31□□□□□ -1.4
TRIM28-208ENST00000597172 LINC00959A0A1B0GUT2 108 aa6.31□□□□□ -1.4
TRIM28-208ENST00000597172 UBE2D1P51668 147 aa6.31□□□□□ -1.4
TRIM28-208ENST00000597172 KRTDAPP60985 99 aa6.31□□□□□ -1.4
TRIM28-208ENST00000597172 PAPPA-AS1Q5QFB9 102 aa6.31□□□□□ -1.4
TRIM28-208ENST00000597172 CLPSL2Q6UWE3 100 aa6.31□□□□□ -1.4
TRIM28-208ENST00000597172 TEX43Q6ZNM6 134 aa6.31□□□□□ -1.4
TRIM28-208ENST00000597172 OR10D4PQ8NGN7 298 aa6.31□□□□□ -1.4
TRIM28-208ENST00000597172 MAP1LC3CQ9BXW4 147 aa6.31□□□□□ -1.4
TRIM28-208ENST00000597172 TRAV9-2A0A087WT02 112 aa6.3□□□□□ -1.4
TRIM28-208ENST00000597172 TRAV13-1A0A0B4J241 112 aa6.3□□□□□ -1.4
TRIM28-208ENST00000597172 NBDYA0A0U1RRE5 68 aa6.3□□□□□ -1.4
TRIM28-208ENST00000597172 LOC105371267A0A1B0GV96 52 aa6.3□□□□□ -1.4
TRIM28-208ENST00000597172 H0Y8G0 127 aa6.3□□□□□ -1.4
TRIM28-208ENST00000597172 K7EP13 123 aa6.3□□□□□ -1.4
TRIM28-208ENST00000597172 COX6A2Q02221 97 aa6.3□□□□□ -1.4
TRIM28-208ENST00000597172 ODF1Q14990 250 aa6.3□□□□□ -1.4
TRIM28-208ENST00000597172 PET117Q6UWS5 81 aa6.3□□□□□ -1.4
TRIM28-208ENST00000597172 FAM19A3Q7Z5A8 133 aa6.3□□□□□ -1.4
TRIM28-208ENST00000597172 UBE2WQ96B02 151 aa6.3□□□□□ -1.4
TRIM28-208ENST00000597172 IGLV4-69A0A075B6H9 119 aa6.29□□□□□ -1.4
TRIM28-208ENST00000597172 A0A0J9YXV3 536 aa6.29□□□□□ -1.4
TRIM28-208ENST00000597172 LINC00242Q5T6M2 205 aa6.29□□□□□ -1.4
TRIM28-208ENST00000597172 KRTAP26-1Q6PEX3 210 aa6.29□□□□□ -1.4
TRIM28-208ENST00000597172 C10orf126Q8N4M7 172 aa6.29□□□□□ -1.4
TRIM28-208ENST00000597172 PMCHL2Q9BQD1 86 aa6.29□□□□□ -1.4
TRIM28-208ENST00000597172 C2orf88Q9BSF0 95 aa6.29□□□□□ -1.4
TRIM28-208ENST00000597172 MRPL35Q9NZE8 188 aaKnown RBP6.29□□□□□ -1.4
TRIM28-208ENST00000597172 CHTOPQ9Y3Y2 248 aaKnown RBP6.29□□□□□ -1.4
TRIM28-208ENST00000597172 IGLV10-54A0A075B6I4 117 aa6.28□□□□□ -1.4
TRIM28-208ENST00000597172 IGLC3P0DOY3 106 aa6.28□□□□□ -1.4
TRIM28-208ENST00000597172 MIAQ16674 131 aa6.28□□□□□ -1.4
TRIM28-208ENST00000597172 LINC01545Q5VT33 79 aa6.28□□□□□ -1.4
TRIM28-208ENST00000597172 CHCHD10Q8WYQ3 142 aaPredicted RBP6.28□□□□□ -1.4
TRIM28-208ENST00000597172 TRAV8-3A0A0A6YYJ7 113 aa6.27□□□□□ -1.41
TRIM28-208ENST00000597172 TRAV8-4A0A0B4J246 113 aa6.27□□□□□ -1.41
TRIM28-208ENST00000597172 TINCRA0A1B0GVN0 87 aa6.27□□□□□ -1.41
TRIM28-208ENST00000597172 F8VRH5 84 aa6.27□□□□□ -1.41
TRIM28-208ENST00000597172 CCL25O15444 150 aa6.27□□□□□ -1.41
TRIM28-208ENST00000597172 CRPP02741 224 aa6.27□□□□□ -1.41
TRIM28-208ENST00000597172 SS18Q15532 418 aa6.27□□□□□ -1.41
TRIM28-208ENST00000597172 NFE4Q86UQ8 179 aa6.27□□□□□ -1.41
TRIM28-208ENST00000597172 Q9HAA7 133 aa6.27□□□□□ -1.41
TRIM28-208ENST00000597172 LRP2P98164 4655 aa6.26□□□□□ -1.41
TRIM28-208ENST00000597172 IGHV3OR16-9A0A0B4J2B5 98 aa6.26□□□□□ -1.41
TRIM28-208ENST00000597172 C11orf86A6NJI1 115 aa6.26□□□□□ -1.41
TRIM28-208ENST00000597172 XCL1P47992 114 aa6.26□□□□□ -1.41
TRIM28-208ENST00000597172 FOXI1Q12951 378 aa6.26□□□□□ -1.41
TRIM28-208ENST00000597172 TTC32Q5I0X7 151 aa6.26□□□□□ -1.41
TRIM28-208ENST00000597172 IGLV5-45A0A087WSX0 123 aa6.25□□□□□ -1.41
TRIM28-208ENST00000597172 GAGE12HA6NDE8 117 aa6.25□□□□□ -1.41
TRIM28-208ENST00000597172 KRTAP29-1A8MX34 341 aaPredicted RBP6.25□□□□□ -1.41
TRIM28-208ENST00000597172 DPM2O94777 84 aa6.25□□□□□ -1.41
TRIM28-208ENST00000597172 IGKCP01834 107 aa6.25□□□□□ -1.41
TRIM28-208ENST00000597172 ZNF22P17026 224 aaPredicted RBP6.25□□□□□ -1.41
TRIM28-208ENST00000597172 JOSD1Q15040 202 aaPredicted RBP6.25□□□□□ -1.41
TRIM28-208ENST00000597172 CD164L2Q6UWJ8 174 aa6.25□□□□□ -1.41
TRIM28-208ENST00000597172 CDKN2A-AS1Q9UH64 79 aa6.25□□□□□ -1.41
TRIM28-208ENST00000597172 LRP1Q07954 4544 aaKnown RBP6.25□□□□□ -1.41
TRIM28-208ENST00000597172 IGKV2D-24A0A075B6R9 120 aa6.24□□□□□ -1.41
TRIM28-208ENST00000597172 SCGB1D1O95968 90 aa6.24□□□□□ -1.41
TRIM28-208ENST00000597172 AKR1D1P51857 326 aa6.24□□□□□ -1.41
TRIM28-208ENST00000597172 HERVK_113P63121 156 aa6.24□□□□□ -1.41
TRIM28-208ENST00000597172 SEC11AP67812 179 aa6.24□□□□□ -1.41
TRIM28-208ENST00000597172 PYY3Q5JQD4 70 aa6.24□□□□□ -1.41
TRIM28-208ENST00000597172 Q6ZRN7 208 aaPredicted RBP6.24□□□□□ -1.41
TRIM28-208ENST00000597172 C5orf38Q86SI9 138 aa6.24□□□□□ -1.41
TRIM28-208ENST00000597172 CHAC1Q9BUX1 264 aa6.24□□□□□ -1.41
TRIM28-208ENST00000597172 C1orf43Q9BWL3 253 aa6.24□□□□□ -1.41
TRIM28-208ENST00000597172 GEMIN7Q9H840 131 aaKnown RBP6.24□□□□□ -1.41
TRIM28-208ENST00000597172 PKHD1L1Q86WI1 4243 aa6.23□□□□□ -1.41
TRIM28-208ENST00000597172 PLNP26678 52 aa6.23□□□□□ -1.41
TRIM28-208ENST00000597172 XGP55808 180 aa6.23□□□□□ -1.41
TRIM28-208ENST00000597172 ATOH7Q8N100 152 aa6.23□□□□□ -1.41
TRIM28-208ENST00000597172 A0A087WZ39 114 aa6.22□□□□□ -1.41
TRIM28-208ENST00000597172 TMEM223A0PJW6 202 aa6.22□□□□□ -1.41
TRIM28-208ENST00000597172 C20orf202A1L168 122 aa6.22□□□□□ -1.41
TRIM28-208ENST00000597172 TMEM170BQ5T4T1 132 aa6.22□□□□□ -1.41
TRIM28-208ENST00000597172 C6orf223Q8N319 242 aa6.22□□□□□ -1.41
TRIM28-208ENST00000597172 LINC00469Q8N7U9 141 aa6.22□□□□□ -1.41
TRIM28-208ENST00000597172 STPG4Q8N801 248 aa6.22□□□□□ -1.41
TRIM28-208ENST00000597172 RMI2Q96E14 147 aa6.22□□□□□ -1.41
TRIM28-208ENST00000597172 FAM229AH3BQW9 127 aa6.21□□□□□ -1.42
TRIM28-208ENST00000597172 COX7A2LO14548 114 aa6.21□□□□□ -1.42
TRIM28-208ENST00000597172 SPINK8P0C7L1 97 aa6.21□□□□□ -1.42
TRIM28-208ENST00000597172 KRTAP10-2P60368 255 aa6.21□□□□□ -1.42
TRIM28-208ENST00000597172 MAJINQ3KP22 176 aa6.21□□□□□ -1.42
TRIM28-208ENST00000597172 CDPF1Q6NVV7 123 aa6.21□□□□□ -1.42
TRIM28-208ENST00000597172 LINC01561Q8N1V8 128 aa6.21□□□□□ -1.42
TRIM28-208ENST00000597172 TM2D2Q9BX73 214 aa6.21□□□□□ -1.42
TRIM28-208ENST00000597172 COX11Q9Y6N1 276 aa6.21□□□□□ -1.42
TRIM28-208ENST00000597172 hDV102S1A0JD36 115 aa6.2□□□□□ -1.42
TRIM28-208ENST00000597172 SMIM1B2RUZ4 78 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms