RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 ZNF843Q8N446 348 aa11.73□□□□□ -0.53
LIG1-206ENST00000594067 TMEM86BQ8N661 226 aa11.73□□□□□ -0.53
LIG1-206ENST00000594067 DAZ3Q9NR90 486 aaKnown RBP11.73□□□□□ -0.53
LIG1-206ENST00000594067 CDC42SE2Q9NRR3 84 aa11.73□□□□□ -0.53
LIG1-206ENST00000594067 MEIG1Q5JSS6 88 aa11.73□□□□□ -0.53
LIG1-206ENST00000594067 PRIMA1Q86XR5 153 aa11.73□□□□□ -0.53
LIG1-206ENST00000594067 CHCHD5Q9BSY4 110 aa11.73□□□□□ -0.53
LIG1-206ENST00000594067 WFDC10AQ9H1F0 79 aa11.73□□□□□ -0.53
LIG1-206ENST00000594067 ESM1Q9NQ30 184 aa11.72□□□□□ -0.53
LIG1-206ENST00000594067 CSDC2Q9Y534 153 aaKnown RBP11.72□□□□□ -0.53
LIG1-206ENST00000594067 NF1P21359 2839 aa11.72□□□□□ -0.53
LIG1-206ENST00000594067 FAM19A3Q7Z5A8 133 aa11.72□□□□□ -0.53
LIG1-206ENST00000594067 C2CD3Q4AC94 2353 aa11.71□□□□□ -0.53
LIG1-206ENST00000594067 WFDC11Q8NEX6 87 aa11.71□□□□□ -0.53
LIG1-206ENST00000594067 LOC100131303A0A0U1RQF7 123 aa11.71□□□□□ -0.54
LIG1-206ENST00000594067 F5H768 121 aa11.7□□□□□ -0.54
LIG1-206ENST00000594067 ACYP1P07311 99 aa11.7□□□□□ -0.54
LIG1-206ENST00000594067 GIG44P09565 113 aaPredicted RBP11.7□□□□□ -0.54
LIG1-206ENST00000594067 UBE2L6O14933 153 aa11.7□□□□□ -0.54
LIG1-206ENST00000594067 RPL35AP18077 110 aaKnown RBP11.7□□□□□ -0.54
LIG1-206ENST00000594067 APCP25054 2843 aa11.69□□□□□ -0.54
LIG1-206ENST00000594067 TMEM243Q9BU79 118 aa11.69□□□□□ -0.54
LIG1-206ENST00000594067 NIPBLQ6KC79 2804 aaeCLIP11.68□□□□□ -0.54
LIG1-206ENST00000594067 TRGV2A0A075B6R0 118 aa11.68□□□□□ -0.54
LIG1-206ENST00000594067 PLA2G2AP14555 144 aa11.68□□□□□ -0.54
LIG1-206ENST00000594067 SMCR5Q8TEV8 140 aa11.68□□□□□ -0.54
LIG1-206ENST00000594067 ITPR3Q14573 2671 aa11.68□□□□□ -0.54
LIG1-206ENST00000594067 NBPF19A0A087WUL8 3843 aa11.68□□□□□ -0.54
LIG1-206ENST00000594067 COPS9Q8WXC6 57 aa11.67□□□□□ -0.54
LIG1-206ENST00000594067 IMUPQ9GZP8 106 aa11.67□□□□□ -0.54
LIG1-206ENST00000594067 C22orf24Q9Y442 160 aa11.67□□□□□ -0.54
LIG1-206ENST00000594067 SETD2Q9BYW2 2564 aaPredicted RBP11.67□□□□□ -0.54
LIG1-206ENST00000594067 PLAC8L1A1L4L8 177 aa11.67□□□□□ -0.54
LIG1-206ENST00000594067 TRACP01848 142 aa11.67□□□□□ -0.54
LIG1-206ENST00000594067 JMJD1CQ15652 2540 aa11.67□□□□□ -0.54
LIG1-206ENST00000594067 IGKV3OR2-268A0A0C4DH90 116 aa11.66□□□□□ -0.54
LIG1-206ENST00000594067 BAALC-AS2P0C853 105 aa11.66□□□□□ -0.54
LIG1-206ENST00000594067 FAM218AQ96MZ4 157 aa11.66□□□□□ -0.54
LIG1-206ENST00000594067 CCDC168Q8NDH2 2452 aa11.66□□□□□ -0.54
LIG1-206ENST00000594067 SMIM20Q8N5G0 67 aa11.65□□□□□ -0.54
LIG1-206ENST00000594067 C16orf74Q96GX8 76 aa11.65□□□□□ -0.54
LIG1-206ENST00000594067 FAM236AA0A1B0GUQ0 79 aa11.64□□□□□ -0.55
LIG1-206ENST00000594067 FAM236BA0A1B0GV22 79 aa11.64□□□□□ -0.55
LIG1-206ENST00000594067 SDIM1Q6ZPB5 146 aa11.64□□□□□ -0.55
LIG1-206ENST00000594067 HERV-K104P63124 156 aa11.64□□□□□ -0.55
LIG1-206ENST00000594067 SETXQ7Z333 2677 aaKnown RBP11.64□□□□□ -0.55
LIG1-206ENST00000594067 LINC00643Q86TS7 51 aa11.63□□□□□ -0.55
LIG1-206ENST00000594067 TRGV4A0A0C4DH28 118 aa11.63□□□□□ -0.55
LIG1-206ENST00000594067 LINC01006Q8NI28 216 aa11.63□□□□□ -0.55
LIG1-206ENST00000594067 FAM110AQ9BQ89 295 aa11.63□□□□□ -0.55
LIG1-206ENST00000594067 TOMM7Q9P0U1 55 aa11.63□□□□□ -0.55
LIG1-206ENST00000594067 HIST2H2BCQ6DN03 193 aa11.62□□□□□ -0.55
LIG1-206ENST00000594067 C19orf73Q9NVV2 129 aa11.62□□□□□ -0.55
LIG1-206ENST00000594067 TRBV6-4A0A1B0GX49 114 aa11.61□□□□□ -0.55
LIG1-206ENST00000594067 PPDPFQ9H3Y8 114 aa11.61□□□□□ -0.55
LIG1-206ENST00000594067 FLNAP21333 2647 aaKnown RBP11.61□□□□□ -0.55
LIG1-206ENST00000594067 IGLV4-60A0A075B6I1 120 aa11.61□□□□□ -0.55
LIG1-206ENST00000594067 C3orf56Q8N813 242 aa11.61□□□□□ -0.55
LIG1-206ENST00000594067 COX7B2Q8TF08 81 aa11.61□□□□□ -0.55
LIG1-206ENST00000594067 CMC4P56277 68 aaPredicted RBP11.6□□□□□ -0.55
LIG1-206ENST00000594067 FAM222AQ5U5X8 452 aa11.6□□□□□ -0.55
LIG1-206ENST00000594067 CSNK1G2-AS1Q8NCQ2 148 aa11.6□□□□□ -0.55
LIG1-206ENST00000594067 IGLV1-51P01701 117 aa11.59□□□□□ -0.55
LIG1-206ENST00000594067 MIR7-3HGQ8N6C7 128 aa11.59□□□□□ -0.55
LIG1-206ENST00000594067 RPL28P46779 137 aaKnown RBP11.59□□□□□ -0.55
LIG1-206ENST00000594067 OVOL2Q9BRP0 275 aa11.59□□□□□ -0.55
LIG1-206ENST00000594067 Q9HAA7 133 aa11.59□□□□□ -0.55
LIG1-206ENST00000594067 PF4P02776 101 aa11.58□□□□□ -0.56
LIG1-206ENST00000594067 FHL2Q14192 279 aa11.58□□□□□ -0.56
LIG1-206ENST00000594067 TRAV13-2A0A0B4J235 113 aa11.57□□□□□ -0.56
LIG1-206ENST00000594067 LINC00337Q8N6G1 96 aa11.57□□□□□ -0.56
LIG1-206ENST00000594067 TRBV6-8A0A0A6YYG3 113 aa11.57□□□□□ -0.56
LIG1-206ENST00000594067 TMEM126AQ9H061 195 aa11.57□□□□□ -0.56
LIG1-206ENST00000594067 IGKV2-28A0A075B6P5 120 aa11.56□□□□□ -0.56
LIG1-206ENST00000594067 IGKV2D-28P01615 120 aa11.56□□□□□ -0.56
LIG1-206ENST00000594067 MALP21145 153 aa11.56□□□□□ -0.56
LIG1-206ENST00000594067 C5orf38Q86SI9 138 aa11.56□□□□□ -0.56
LIG1-206ENST00000594067 INAFM2P0DMQ5 153 aa11.55□□□□□ -0.56
LIG1-206ENST00000594067 LINC00158P58513 81 aa11.55□□□□□ -0.56
LIG1-206ENST00000594067 CRPP02741 224 aa11.55□□□□□ -0.56
LIG1-206ENST00000594067 SND1-IT1Q9HBX3 110 aa11.55□□□□□ -0.56
LIG1-206ENST00000594067 GAGE2AQ6NT46 116 aa11.54□□□□□ -0.56
LIG1-206ENST00000594067 C16orf95Q9H693 158 aa11.54□□□□□ -0.56
LIG1-206ENST00000594067 IGHV3OR16-9A0A0B4J2B5 98 aa11.54□□□□□ -0.56
LIG1-206ENST00000594067 RNASE1P07998 156 aaKnown RBP11.54□□□□□ -0.56
LIG1-206ENST00000594067 DEFB130BP0DP73 79 aa11.54□□□□□ -0.56
LIG1-206ENST00000594067 DEFB130AP0DP74 79 aa11.54□□□□□ -0.56
LIG1-206ENST00000594067 KRTAP1-1Q07627 177 aa11.54□□□□□ -0.56
LIG1-206ENST00000594067 ACANP16112 2415 aa11.54□□□□□ -0.56
LIG1-206ENST00000594067 ANK3Q12955 4377 aaKnown RBP11.53□□□□□ -0.56
LIG1-206ENST00000594067 CXCL5P42830 114 aa11.53□□□□□ -0.56
LIG1-206ENST00000594067 C3orf22Q8N5N4 141 aa11.53□□□□□ -0.56
LIG1-206ENST00000594067 MTORP42345 2549 aa11.52□□□□□ -0.56
LIG1-206ENST00000594067 PFN2P35080 140 aa11.52□□□□□ -0.57
LIG1-206ENST00000594067 SMIM11BQ8TCY0 68 aa11.52□□□□□ -0.57
LIG1-206ENST00000594067 A0A087WYN8 130 aa11.52□□□□□ -0.57
LIG1-206ENST00000594067 C9orf129Q5T035 196 aaKnown RBP11.52□□□□□ -0.57
LIG1-206ENST00000594067 CCL18P55774 89 aa11.51□□□□□ -0.57
LIG1-206ENST00000594067 C11orf68Q9H3H3 251 aaKnown RBP11.51□□□□□ -0.57
LIG1-206ENST00000594067 UQCRQO14949 82 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 146.6 ms