RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 FLNCQ14315 2725 aa10.56□□□□□ -0.72
SMARCA4-219ENST00000592604 ANKRD17O75179 2603 aaKnown RBP10.55□□□□□ -0.72
SMARCA4-219ENST00000592604 PKD1L2Q7Z442 2459 aa10.55□□□□□ -0.72
SMARCA4-219ENST00000592604 PF4P02776 101 aa10.55□□□□□ -0.72
SMARCA4-219ENST00000592604 KHDC1LQ5JSQ8 128 aa10.55□□□□□ -0.72
SMARCA4-219ENST00000592604 Q6ZTI0 123 aa10.55□□□□□ -0.72
SMARCA4-219ENST00000592604 FAM222AQ5U5X8 452 aa10.55□□□□□ -0.72
SMARCA4-219ENST00000592604 HIST2H2BCQ6DN03 193 aa10.55□□□□□ -0.72
SMARCA4-219ENST00000592604 HIST2H2BDQ6DRA6 164 aa10.55□□□□□ -0.72
SMARCA4-219ENST00000592604 PRO0628Q9UI54 55 aa10.55□□□□□ -0.72
SMARCA4-219ENST00000592604 FAM218AQ96MZ4 157 aa10.54□□□□□ -0.72
SMARCA4-219ENST00000592604 LINC00643Q86TS7 51 aa10.54□□□□□ -0.72
SMARCA4-219ENST00000592604 C3orf22Q8N5N4 141 aa10.54□□□□□ -0.72
SMARCA4-219ENST00000592604 MALP21145 153 aa10.54□□□□□ -0.72
SMARCA4-219ENST00000592604 RPL28P46779 137 aaKnown RBP10.54□□□□□ -0.72
SMARCA4-219ENST00000592604 TRAV13-2A0A0B4J235 113 aa10.53□□□□□ -0.72
SMARCA4-219ENST00000592604 SMCR5Q8TEV8 140 aa10.53□□□□□ -0.72
SMARCA4-219ENST00000592604 TMEM243Q9BU79 118 aa10.53□□□□□ -0.72
SMARCA4-219ENST00000592604 Q5XG85 94 aa10.52□□□□□ -0.72
SMARCA4-219ENST00000592604 CSMD2Q7Z408 3487 aa10.51□□□□□ -0.73
SMARCA4-219ENST00000592604 UBE2L6O14933 153 aa10.51□□□□□ -0.73
SMARCA4-219ENST00000592604 GAGE2AQ6NT46 116 aa10.5□□□□□ -0.73
SMARCA4-219ENST00000592604 INAFM2P0DMQ5 153 aa10.5□□□□□ -0.73
SMARCA4-219ENST00000592604 COX7B2Q8TF08 81 aa10.5□□□□□ -0.73
SMARCA4-219ENST00000592604 LINC00337Q8N6G1 96 aa10.49□□□□□ -0.73
SMARCA4-219ENST00000592604 OXTP01178 125 aa10.49□□□□□ -0.73
SMARCA4-219ENST00000592604 CRPP02741 224 aa10.49□□□□□ -0.73
SMARCA4-219ENST00000592604 MIR7-3HGQ8N6C7 128 aa10.49□□□□□ -0.73
SMARCA4-219ENST00000592604 NOP10Q9NPE3 64 aaKnown RBP10.49□□□□□ -0.73
SMARCA4-219ENST00000592604 MYO9AB2RTY4 2548 aa10.48□□□□□ -0.73
SMARCA4-219ENST00000592604 IGKV2-28A0A075B6P5 120 aa10.48□□□□□ -0.73
SMARCA4-219ENST00000592604 IGKV2D-28P01615 120 aa10.48□□□□□ -0.73
SMARCA4-219ENST00000592604 UQCRQO14949 82 aa10.48□□□□□ -0.73
SMARCA4-219ENST00000592604 UTP20O75691 2785 aaKnown RBP10.48□□□□□ -0.73
SMARCA4-219ENST00000592604 OVOL2Q9BRP0 275 aa10.47□□□□□ -0.73
SMARCA4-219ENST00000592604 SND1-IT1Q9HBX3 110 aa10.47□□□□□ -0.73
SMARCA4-219ENST00000592604 PLAC8L1A1L4L8 177 aa10.47□□□□□ -0.73
SMARCA4-219ENST00000592604 CXCL5P42830 114 aa10.47□□□□□ -0.73
SMARCA4-219ENST00000592604 LINC00336Q6ZUF6 198 aa10.47□□□□□ -0.73
SMARCA4-219ENST00000592604 LINC00526Q96FQ7 95 aa10.47□□□□□ -0.73
SMARCA4-219ENST00000592604 FBN2P35556 2912 aa10.47□□□□□ -0.73
SMARCA4-219ENST00000592604 TRBV6-4A0A1B0GX49 114 aa10.47□□□□□ -0.73
SMARCA4-219ENST00000592604 POLQO75417 2590 aa10.46□□□□□ -0.73
SMARCA4-219ENST00000592604 GIG44P09565 113 aaPredicted RBP10.46□□□□□ -0.73
SMARCA4-219ENST00000592604 C5orf38Q86SI9 138 aa10.46□□□□□ -0.73
SMARCA4-219ENST00000592604 TMEM86BQ8N661 226 aa10.46□□□□□ -0.73
SMARCA4-219ENST00000592604 DPH3Q96FX2 82 aa10.46□□□□□ -0.73
SMARCA4-219ENST00000592604 Q9HAA7 133 aa10.46□□□□□ -0.73
SMARCA4-219ENST00000592604 FAM236DA0A1B0GTK5 79 aa10.45□□□□□ -0.74
SMARCA4-219ENST00000592604 FAM236CP0DP71 79 aa10.45□□□□□ -0.74
SMARCA4-219ENST00000592604 C16orf74Q96GX8 76 aa10.45□□□□□ -0.74
SMARCA4-219ENST00000592604 ATP5G1P05496 136 aa10.45□□□□□ -0.74
SMARCA4-219ENST00000592604 AKAP9Q99996 3911 aa10.45□□□□□ -0.74
SMARCA4-219ENST00000592604 TEX15Q9BXT5 2789 aa10.44□□□□□ -0.74
SMARCA4-219ENST00000592604 LOC100131303A0A0U1RQF7 123 aa10.44□□□□□ -0.74
SMARCA4-219ENST00000592604 IGHV3OR16-9A0A0B4J2B5 98 aa10.44□□□□□ -0.74
SMARCA4-219ENST00000592604 CCL24O00175 119 aa10.44□□□□□ -0.74
SMARCA4-219ENST00000592604 SMIM11BQ8TCY0 68 aa10.44□□□□□ -0.74
SMARCA4-219ENST00000592604 DSCR8Q96T75 97 aa10.44□□□□□ -0.74
SMARCA4-219ENST00000592604 C2CD3Q4AC94 2353 aa10.44□□□□□ -0.74
SMARCA4-219ENST00000592604 WNK1Q9H4A3 2382 aa10.44□□□□□ -0.74
SMARCA4-219ENST00000592604 H0YGX0 51 aa10.44□□□□□ -0.74
SMARCA4-219ENST00000592604 CCL18P55774 89 aa10.44□□□□□ -0.74
SMARCA4-219ENST00000592604 CMC4P56277 68 aaPredicted RBP10.44□□□□□ -0.74
SMARCA4-219ENST00000592604 TOMM7Q9P0U1 55 aa10.44□□□□□ -0.74
SMARCA4-219ENST00000592604 ACACBO00763 2458 aa10.44□□□□□ -0.74
SMARCA4-219ENST00000592604 CHD6Q8TD26 2715 aa10.43□□□□□ -0.74
SMARCA4-219ENST00000592604 IGSF10Q6WRI0 2623 aa10.43□□□□□ -0.74
SMARCA4-219ENST00000592604 TRGV2A0A075B6R0 118 aa10.43□□□□□ -0.74
SMARCA4-219ENST00000592604 IBA57-AS1B1ANH7 110 aa10.43□□□□□ -0.74
SMARCA4-219ENST00000592604 LINC00158P58513 81 aa10.43□□□□□ -0.74
SMARCA4-219ENST00000592604 IGLV4-60A0A075B6I1 120 aa10.42□□□□□ -0.74
SMARCA4-219ENST00000592604 A0A087WYN8 130 aa10.42□□□□□ -0.74
SMARCA4-219ENST00000592604 MYO18BQ8IUG5 2567 aa10.42□□□□□ -0.74
SMARCA4-219ENST00000592604 A0A087WZ39 114 aa10.41□□□□□ -0.74
SMARCA4-219ENST00000592604 DNAL4O96015 105 aa10.41□□□□□ -0.74
SMARCA4-219ENST00000592604 KRTAP10-9P60411 292 aa10.41□□□□□ -0.74
SMARCA4-219ENST00000592604 DEFB113Q30KQ7 82 aa10.41□□□□□ -0.74
SMARCA4-219ENST00000592604 OBSCN-AS1Q96MR7 158 aa10.41□□□□□ -0.74
SMARCA4-219ENST00000592604 NOTCH3Q9UM47 2321 aa10.41□□□□□ -0.74
SMARCA4-219ENST00000592604 TRBV6-8A0A0A6YYG3 113 aa10.41□□□□□ -0.74
SMARCA4-219ENST00000592604 TRGV4A0A0C4DH28 118 aa10.4□□□□□ -0.74
SMARCA4-219ENST00000592604 hADV29S1A0JD25 119 aa10.4□□□□□ -0.74
SMARCA4-219ENST00000592604 C1orf195Q5TG92 126 aa10.4□□□□□ -0.75
SMARCA4-219ENST00000592604 C11orf44Q8N8P7 122 aa10.4□□□□□ -0.75
SMARCA4-219ENST00000592604 PIEZO1Q92508 2521 aa10.39□□□□□ -0.75
SMARCA4-219ENST00000592604 IGKV3OR2-268A0A0C4DH90 116 aa10.39□□□□□ -0.75
SMARCA4-219ENST00000592604 FHL2Q14192 279 aa10.39□□□□□ -0.75
SMARCA4-219ENST00000592604 CSNK1G2-AS1Q8NCQ2 148 aa10.39□□□□□ -0.75
SMARCA4-219ENST00000592604 PTPN13Q12923 2485 aa10.39□□□□□ -0.75
SMARCA4-219ENST00000592604 C9orf129Q5T035 196 aaKnown RBP10.38□□□□□ -0.75
SMARCA4-219ENST00000592604 HIST1H4AP62805 103 aaKnown RBP10.38□□□□□ -0.75
SMARCA4-219ENST00000592604 CYSTM1Q9H1C7 97 aa10.38□□□□□ -0.75
SMARCA4-219ENST00000592604 FAM208BQ5VWN6 2430 aa10.38□□□□□ -0.75
SMARCA4-219ENST00000592604 C19orf73Q9NVV2 129 aa10.37□□□□□ -0.75
SMARCA4-219ENST00000592604 DNAJC9-AS1A6NH13 148 aa10.37□□□□□ -0.75
SMARCA4-219ENST00000592604 PFN2P35080 140 aa10.37□□□□□ -0.75
SMARCA4-219ENST00000592604 A0A0U1RQV1 116 aa10.37□□□□□ -0.75
SMARCA4-219ENST00000592604 LY6G6DO95868 133 aa10.36□□□□□ -0.75
SMARCA4-219ENST00000592604 C2orf48Q96LS8 159 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 197.7 ms