RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 PAPPAQ13219 1627 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 VWFP04275 2813 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 CSPG4Q6UVK1 2322 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 ERCC6L2Q5T890 1561 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 PPRC1Q5VV67 1664 aaKnown RBP0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 RGPD3A6NKT7 1758 aaPredicted RBP0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 RYR2Q92736 4967 aa0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 HRNRQ86YZ3 2850 aaPredicted RBP0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 PKD1L3Q7Z443 1732 aa0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 LOC100130705A0A1B0GUX0 176 aa0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 A0A1B0GV90 55 aa0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 ZNF815PA8K554 130 aa0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 HMGN4O00479 90 aa0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 SNAPC5O75971 98 aa0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 TMEM170BQ5T4T1 132 aa0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 SSBP3-AS1Q7Z2R9 100 aa0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 FAM167A-AS1Q96KT0 104 aa0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 TCEAL7Q9BRU2 100 aa0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 NPVFQ9HCQ7 196 aa0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 FAIMQ9NVQ4 179 aa0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 LINC01558Q9Y6Z2 57 aa0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 GAPVD1Q14C86 1478 aa0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 FYCO1Q9BQS8 1478 aa0.14□□□□□ -2.39
SMCHD1-206ENST00000581631 SCAPERQ9BY12 1400 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 ARHGEF12Q9NZN5 1544 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 LAMC1P11047 1609 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 MON2Q7Z3U7 1717 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 CRYBG1Q9Y4K1 1723 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 CHD6Q8TD26 2715 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 PKD1L1Q8TDX9 2849 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 IGLC7A0M8Q6 106 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 C20orf202A1L168 122 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 OOSP1A8MZH6 123 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 TMEM262E9PQX1 116 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 NDUFC1O43677 76 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 SFT2D2O95562 160 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 IFITM1P13164 125 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 S100A1P23297 94 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 S100PP25815 95 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 GNG11P61952 73 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 PIGYQ3MUY2 71 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 CGREF1Q99674 301 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 DPH3P1Q9H4G8 78 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 CDC42SE2Q9NRR3 84 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 PRO1854Q9UHT4 67 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 PRO0255Q9UI72 69 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 MAGI1Q96QZ7 1491 aaPredicted RBP0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 PAPPA2Q9BXP8 1791 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 CSMD3Q7Z407 3707 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 LRRC37AA6NMS7 1700 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 TIAM2Q8IVF5 1701 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 HMGXB3Q12766 1538 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 ABCC2Q92887 1545 aa0.13□□□□□ -2.39
SMCHD1-206ENST00000581631 PPLO60437 1756 aa0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 C5P01031 1676 aa0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 CCDC141Q6ZP82 1450 aa0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 TRAV22A0A0B4J277 110 aa0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 LINC00587B1AMM8 73 aa0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 SAA2P0DJI9 122 aaPredicted RBP0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 UBE2D3P61077 147 aa0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 UBE2D2P62837 147 aa0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 HAMPP81172 84 aa0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 Q6JHZ5 121 aa0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 Q8IZM0 81 aa0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 TMEM263Q8WUH6 116 aaKnown RBP0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 C12orf57Q99622 126 aa0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 TP53AIP1Q9HCN2 124 aa0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 NXT2Q9NPJ8 142 aaKnown RBP0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 AP4S1Q9Y587 144 aa0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 QSER1Q2KHR3 1735 aa0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 WNK1Q9H4A3 2382 aa0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 CELSR1Q9NYQ6 3014 aa0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 TARBP1Q13395 1621 aaKnown RBP0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 FLNAP21333 2647 aaKnown RBP0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 VPS8Q8N3P4 1428 aa0.12□□□□□ -2.39
SMCHD1-206ENST00000581631 COL4A6Q14031 1691 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 SETBP1Q9Y6X0 1596 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 LRP1Q07954 4544 aaKnown RBP0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 FLNCQ14315 2725 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 TRBV6-1A0A0K0K1D8 114 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 A0A1B0GWA3 101 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 CRYM-AS1A6NIL9 109 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 CHKB-CPT1BH3BT56 60 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 M0R3E3 92 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 CFDP00746 253 aaPredicted RBP0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 TRAPPC2P0DI81 140 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 TRAPPC2BP0DI82 140 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 HSD52Q0P140 79 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 Q0VG73 95 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 WFDC2Q14508 124 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 Q5VSD8 79 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 SPRR4Q96PI1 79 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 PRO1933Q9H354 126 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 LINC00472Q9H8W2 130 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 MANBALQ9NQG1 85 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 LINC00846Q9NV44 126 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 U3KQA8 63 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 KIAA0556O60303 1618 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 COL7A1Q02388 2944 aa0.11□□□□□ -2.39
SMCHD1-206ENST00000581631 DCHS2Q6V1P9 2916 aa0.11□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms