RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 MRPS16Q9Y3D3 137 aaKnown RBP7.24□□□□□ -1.25
SS18-217ENST00000580958 A0A1B0GUV1 79 aa7.23□□□□□ -1.25
SS18-217ENST00000580958 EREGO14944 169 aa7.23□□□□□ -1.25
SS18-217ENST00000580958 LINC00242Q5T6M2 205 aa7.23□□□□□ -1.25
SS18-217ENST00000580958 IGHV3-64A0A075B6Q5 118 aa7.22□□□□□ -1.25
SS18-217ENST00000580958 LEPROTO15243 131 aa7.22□□□□□ -1.25
SS18-217ENST00000580958 SPINK8P0C7L1 97 aa7.22□□□□□ -1.25
SS18-217ENST00000580958 TSPEAR-AS2P59090 65 aa7.22□□□□□ -1.25
SS18-217ENST00000580958 HERVK_113P63121 156 aa7.22□□□□□ -1.25
SS18-217ENST00000580958 CDKN2A-AS1Q9UH64 79 aa7.22□□□□□ -1.25
SS18-217ENST00000580958 IGLV5-45A0A087WSX0 123 aa7.21□□□□□ -1.26
SS18-217ENST00000580958 H3BRM9 83 aa7.21□□□□□ -1.26
SS18-217ENST00000580958 SIVA1O15304 175 aa7.21□□□□□ -1.26
SS18-217ENST00000580958 SEC11AP67812 179 aa7.21□□□□□ -1.26
SS18-217ENST00000580958 KRTAP19-1Q8IUB9 90 aa7.21□□□□□ -1.26
SS18-217ENST00000580958 PLEKHB2Q96CS7 222 aa7.21□□□□□ -1.26
SS18-217ENST00000580958 SNHG12Q9BXW3 62 aa7.21□□□□□ -1.26
SS18-217ENST00000580958 COL7A1Q02388 2944 aa7.21□□□□□ -1.26
SS18-217ENST00000580958 TRAV8-3A0A0A6YYJ7 113 aa7.2□□□□□ -1.26
SS18-217ENST00000580958 MYMXA0A1B0GTQ4 84 aa7.2□□□□□ -1.26
SS18-217ENST00000580958 ZNF815PA8K554 130 aa7.2□□□□□ -1.26
SS18-217ENST00000580958 J3QQQ9 107 aa7.2□□□□□ -1.26
SS18-217ENST00000580958 M0R143 59 aa7.2□□□□□ -1.26
SS18-217ENST00000580958 LGALS3P17931 250 aaKnown RBP7.2□□□□□ -1.26
SS18-217ENST00000580958 BATFQ16520 125 aa7.2□□□□□ -1.26
SS18-217ENST00000580958 ESRGQ1W209 222 aa7.2□□□□□ -1.26
SS18-217ENST00000580958 CLPSL2Q6UWE3 100 aa7.2□□□□□ -1.26
SS18-217ENST00000580958 IGHV1-58A0A0C4DH39 117 aa7.19□□□□□ -1.26
SS18-217ENST00000580958 LINC00959A0A1B0GUT2 108 aa7.19□□□□□ -1.26
SS18-217ENST00000580958 IGHV3-30-3P0DP02 117 aa7.19□□□□□ -1.26
SS18-217ENST00000580958 HINT1P49773 126 aaPredicted RBP7.19□□□□□ -1.26
SS18-217ENST00000580958 HIGD1BQ9P298 99 aa7.19□□□□□ -1.26
SS18-217ENST00000580958 STAB2Q8WWQ8 2551 aa7.19□□□□□ -1.26
SS18-217ENST00000580958 ANGP03950 147 aaKnown RBP7.18□□□□□ -1.26
SS18-217ENST00000580958 NHLRC4P0CG21 123 aaPredicted RBP7.18□□□□□ -1.26
SS18-217ENST00000580958 SS18Q15532 418 aa7.18□□□□□ -1.26
SS18-217ENST00000580958 WFDC10BQ8IUB3 73 aa7.18□□□□□ -1.26
SS18-217ENST00000580958 LINC00269Q8N2A0 174 aa7.18□□□□□ -1.26
SS18-217ENST00000580958 C15orf53Q8NAA6 179 aa7.18□□□□□ -1.26
SS18-217ENST00000580958 PLECQ15149 4684 aaKnown RBP7.18□□□□□ -1.26
SS18-217ENST00000580958 IGHV3-30P01768 117 aa7.17□□□□□ -1.26
SS18-217ENST00000580958 IGHV3-33P01772 117 aa7.17□□□□□ -1.26
SS18-217ENST00000580958 IGHV3-30-5P0DP03 117 aa7.17□□□□□ -1.26
SS18-217ENST00000580958 HSD52Q0P140 79 aa7.17□□□□□ -1.26
SS18-217ENST00000580958 IGLV5-39A0A0G2JS06 123 aa7.16□□□□□ -1.26
SS18-217ENST00000580958 SMIM1B2RUZ4 78 aa7.16□□□□□ -1.26
SS18-217ENST00000580958 IGLL5B9A064 214 aa7.16□□□□□ -1.26
SS18-217ENST00000580958 CCL25O15444 150 aa7.16□□□□□ -1.26
SS18-217ENST00000580958 REG3AQ06141 175 aa7.16□□□□□ -1.26
SS18-217ENST00000580958 BVES-AS1Q5T3Y7 98 aa7.16□□□□□ -1.26
SS18-217ENST00000580958 KLK12Q9UKR0 248 aa7.16□□□□□ -1.26
SS18-217ENST00000580958 IGHV3OR16-9A0A0B4J2B5 98 aa7.15□□□□□ -1.26
SS18-217ENST00000580958 XCL1P47992 114 aa7.15□□□□□ -1.26
SS18-217ENST00000580958 SCGB1D4Q6XE38 83 aa7.15□□□□□ -1.26
SS18-217ENST00000580958 DNAH1Q9P2D7 4330 aa7.15□□□□□ -1.27
SS18-217ENST00000580958 IGLV10-54A0A075B6I4 117 aa7.14□□□□□ -1.27
SS18-217ENST00000580958 ZFAND6Q6FIF0 208 aa7.14□□□□□ -1.27
SS18-217ENST00000580958 C5orf38Q86SI9 138 aa7.14□□□□□ -1.27
SS18-217ENST00000580958 CHCHD10Q8WYQ3 142 aaPredicted RBP7.14□□□□□ -1.27
SS18-217ENST00000580958 KRTAP9-9Q9BYP9 154 aa7.14□□□□□ -1.27
SS18-217ENST00000580958 KRTAP9-4Q9BYQ2 154 aa7.14□□□□□ -1.27
SS18-217ENST00000580958 NDUFA12Q9UI09 145 aa7.14□□□□□ -1.27
SS18-217ENST00000580958 A0A087WZ39 114 aa7.13□□□□□ -1.27
SS18-217ENST00000580958 C10orf126Q8N4M7 172 aa7.13□□□□□ -1.27
SS18-217ENST00000580958 HIST1H4GQ99525 98 aa7.13□□□□□ -1.27
SS18-217ENST00000580958 LINC00588Q9Y4M8 146 aa7.13□□□□□ -1.27
SS18-217ENST00000580958 A0A0J9YXY3 114 aa7.12□□□□□ -1.27
SS18-217ENST00000580958 NDUFA1O15239 70 aa7.12□□□□□ -1.27
SS18-217ENST00000580958 CRPP02741 224 aa7.12□□□□□ -1.27
SS18-217ENST00000580958 GCSHP23434 173 aa7.12□□□□□ -1.27
SS18-217ENST00000580958 TAL2Q16559 108 aa7.12□□□□□ -1.27
SS18-217ENST00000580958 LBHQ53QV2 105 aaPredicted RBP7.12□□□□□ -1.27
SS18-217ENST00000580958 CD164L2Q6UWJ8 174 aa7.12□□□□□ -1.27
SS18-217ENST00000580958 ENHOQ6UWT2 76 aa7.12□□□□□ -1.27
SS18-217ENST00000580958 COX7B2Q8TF08 81 aa7.12□□□□□ -1.27
SS18-217ENST00000580958 ORAOV1Q8WV07 137 aa7.12□□□□□ -1.27
SS18-217ENST00000580958 UBE2WQ96B02 151 aa7.12□□□□□ -1.27
SS18-217ENST00000580958 PRR34Q9NV39 138 aa7.12□□□□□ -1.27
SS18-217ENST00000580958 MEGF8Q7Z7M0 2845 aa7.12□□□□□ -1.27
SS18-217ENST00000580958 STARD9Q9P2P6 4700 aa7.11□□□□□ -1.27
SS18-217ENST00000580958 CSMD3Q7Z407 3707 aa7.11□□□□□ -1.27
SS18-217ENST00000580958 GAGE12HA6NDE8 117 aa7.11□□□□□ -1.27
SS18-217ENST00000580958 FXYD2P54710 66 aa7.11□□□□□ -1.27
SS18-217ENST00000580958 CCL18P55774 89 aa7.11□□□□□ -1.27
SS18-217ENST00000580958 LINC01556Q5JQF7 62 aa7.11□□□□□ -1.27
SS18-217ENST00000580958 COL5A1-AS1Q5SY13 56 aa7.11□□□□□ -1.27
SS18-217ENST00000580958 CEND1Q8N111 149 aa7.11□□□□□ -1.27
SS18-217ENST00000580958 TOMM7Q9P0U1 55 aa7.11□□□□□ -1.27
SS18-217ENST00000580958 COX7A2LO14548 114 aa7.1□□□□□ -1.27
SS18-217ENST00000580958 FOXI1Q12951 378 aa7.1□□□□□ -1.27
SS18-217ENST00000580958 LINC01561Q8N1V8 128 aa7.1□□□□□ -1.27
SS18-217ENST00000580958 Q9H8V8 135 aa7.1□□□□□ -1.27
SS18-217ENST00000580958 SPANXB1Q9NS25 103 aaPredicted RBP7.1□□□□□ -1.27
SS18-217ENST00000580958 VPS13DQ5THJ4 4388 aa7.09□□□□□ -1.27
SS18-217ENST00000580958 K7EP13 123 aa7.09□□□□□ -1.27
SS18-217ENST00000580958 DNAH10OSP0CZ25 163 aa7.09□□□□□ -1.27
SS18-217ENST00000580958 SRSF9Q13242 221 aaKnown RBP eCLIP7.09□□□□□ -1.27
SS18-217ENST00000580958 ZNF625Q96I27 306 aaPredicted RBP7.09□□□□□ -1.27
SS18-217ENST00000580958 TM2D2Q9BX73 214 aa7.09□□□□□ -1.27
SS18-217ENST00000580958 APLNQ9ULZ1 77 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms