RNA–Protein interactions for RNA: ENST00000578698.1

PTPRM-209, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 3

Gene PTPRM, Length 486 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-209ENST00000578698 C9orf116Q5BN46 136 aaPredicted RBP1.59□□□□□ -2.15
PTPRM-209ENST00000578698 IFI27L1Q96BM0 104 aa1.59□□□□□ -2.15
PTPRM-209ENST00000578698 LIMD2Q9BT23 127 aa1.59□□□□□ -2.15
PTPRM-209ENST00000578698 FXYD6Q9H0Q3 95 aa1.59□□□□□ -2.15
PTPRM-209ENST00000578698 CDC42SE1Q9NRR8 79 aa1.59□□□□□ -2.15
PTPRM-209ENST00000578698 MAST4O15021 2626 aa1.59□□□□□ -2.16
PTPRM-209ENST00000578698 LAMB2P55268 1798 aa1.59□□□□□ -2.16
PTPRM-209ENST00000578698 CR1P17927 2039 aa1.59□□□□□ -2.16
PTPRM-209ENST00000578698 BRCA2P51587 3418 aa1.59□□□□□ -2.16
PTPRM-209ENST00000578698 CLTCL1P53675 1640 aa1.58□□□□□ -2.16
PTPRM-209ENST00000578698 PHRF1Q9P1Y6 1649 aaKnown RBP1.58□□□□□ -2.16
PTPRM-209ENST00000578698 MYH8P13535 1937 aa1.58□□□□□ -2.16
PTPRM-209ENST00000578698 ARFGEF3Q5TH69 2177 aa1.58□□□□□ -2.16
PTPRM-209ENST00000578698 MED13Q9UHV7 2174 aa1.58□□□□□ -2.16
PTPRM-209ENST00000578698 TRBV25-1A0A075B6N4 114 aa1.58□□□□□ -2.16
PTPRM-209ENST00000578698 MYMXA0A1B0GTQ4 84 aa1.58□□□□□ -2.16
PTPRM-209ENST00000578698 LOC101927531A0A1B0GV80 90 aa1.58□□□□□ -2.16
PTPRM-209ENST00000578698 LOC285095A0A1B0GVY8 99 aa1.58□□□□□ -2.16
PTPRM-209ENST00000578698 HMGN2P05204 90 aaKnown RBP1.58□□□□□ -2.16
PTPRM-209ENST00000578698 RBM3P98179 157 aaKnown RBP1.58□□□□□ -2.16
PTPRM-209ENST00000578698 RPL7L1Q6DKI1 246 aaKnown RBP1.58□□□□□ -2.16
PTPRM-209ENST00000578698 USP9XQ93008 2570 aaPredicted RBP1.58□□□□□ -2.16
PTPRM-209ENST00000578698 BTAF1O14981 1849 aa1.58□□□□□ -2.16
PTPRM-209ENST00000578698 KIAA1549LQ6ZVL6 1849 aa1.58□□□□□ -2.16
PTPRM-209ENST00000578698 ARFGEF1Q9Y6D6 1849 aa1.58□□□□□ -2.16
PTPRM-209ENST00000578698 NRXN3Q9Y4C0 1643 aa1.58□□□□□ -2.16
PTPRM-209ENST00000578698 INTS1Q8N201 2190 aaKnown RBP1.58□□□□□ -2.16
PTPRM-209ENST00000578698 NAV2Q8IVL1 2488 aa1.58□□□□□ -2.16
PTPRM-209ENST00000578698 COL4A6Q14031 1691 aa1.58□□□□□ -2.16
PTPRM-209ENST00000578698 EYSQ5T1H1 3165 aa1.57□□□□□ -2.16
PTPRM-209ENST00000578698 MRC1P22897 1456 aa1.57□□□□□ -2.16
PTPRM-209ENST00000578698 COL5A1P20908 1838 aaPredicted RBP1.57□□□□□ -2.16
PTPRM-209ENST00000578698 PRRC2BQ5JSZ5 2229 aaKnown RBP1.57□□□□□ -2.16
PTPRM-209ENST00000578698 A0A0G2JND7 137 aa1.57□□□□□ -2.16
PTPRM-209ENST00000578698 HCG22E2RYF7 251 aa1.57□□□□□ -2.16
PTPRM-209ENST00000578698 GCHFRP30047 84 aa1.57□□□□□ -2.16
PTPRM-209ENST00000578698 DEFB103AP81534 67 aa1.57□□□□□ -2.16
PTPRM-209ENST00000578698 NMES1Q9C002 83 aa1.57□□□□□ -2.16
PTPRM-209ENST00000578698 ORMDL1Q9P0S3 153 aa1.57□□□□□ -2.16
PTPRM-209ENST00000578698 PRO1854Q9UHT4 67 aa1.57□□□□□ -2.16
PTPRM-209ENST00000578698 C22orf24Q9Y442 160 aa1.57□□□□□ -2.16
PTPRM-209ENST00000578698 NHSQ6T4R5 1651 aa1.57□□□□□ -2.16
PTPRM-209ENST00000578698 LMO7Q8WWI1 1683 aa1.57□□□□□ -2.16
PTPRM-209ENST00000578698 NINQ8N4C6 2090 aa1.57□□□□□ -2.16
PTPRM-209ENST00000578698 ACACBO00763 2458 aa1.57□□□□□ -2.16
PTPRM-209ENST00000578698 RGPD8O14715 1765 aaPredicted RBP1.57□□□□□ -2.16
PTPRM-209ENST00000578698 RGPD5Q99666 1765 aa1.57□□□□□ -2.16
PTPRM-209ENST00000578698 DOCK2Q92608 1830 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 PTPRDP23468 1912 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 TRAV22A0A0B4J277 110 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 CXorf51AA0A1B0GTR3 108 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 TRBV6-4A0A1B0GX49 114 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 CRYM-AS1A6NIL9 109 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 TMEM14DPA8MWL7 114 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 DNAL4O96015 105 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 UBE2D1P51668 147 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 SSBP1Q04837 148 aaKnown RBP1.56□□□□□ -2.16
PTPRM-209ENST00000578698 ZNF56Q15929 161 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 KRTAP13-4Q3LI77 160 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 Q5VV11 94 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 Q6JHZ5 121 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 ZNF818PQ6ZRF7 136 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 C6orf201Q7Z4U5 140 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 BAGE3Q86Y29 109 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 BAGE2Q86Y30 109 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 FAM223AQ8IWN6 122 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 TOMM5Q8N4H5 51 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 SMIM4Q8WVI0 70 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 BPESC1Q9GZL8 116 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 CDC42SE2Q9NRR3 84 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 KLK9Q9UKQ9 250 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 UBE2D4Q9Y2X8 147 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 IFT172Q9UG01 1749 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 PATJQ8NI35 1801 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 TANC1Q9C0D5 1861 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 ZNF462Q96JM2 2506 aa1.56□□□□□ -2.16
PTPRM-209ENST00000578698 C5orf42Q9H799 3197 aa1.55□□□□□ -2.16
PTPRM-209ENST00000578698 ALS2Q96Q42 1657 aa1.55□□□□□ -2.16
PTPRM-209ENST00000578698 ITSN1Q15811 1721 aa1.55□□□□□ -2.16
PTPRM-209ENST00000578698 FMN2Q9NZ56 1722 aa1.55□□□□□ -2.16
PTPRM-209ENST00000578698 ZFHX4Q86UP3 3567 aa1.55□□□□□ -2.16
PTPRM-209ENST00000578698 A0A1B0GWA3 101 aa1.55□□□□□ -2.16
PTPRM-209ENST00000578698 COX6CP09669 75 aa1.55□□□□□ -2.16
PTPRM-209ENST00000578698 IFI27P40305 119 aaPredicted RBP1.55□□□□□ -2.16
PTPRM-209ENST00000578698 ATP5EP2Q5VTU8 51 aa1.55□□□□□ -2.16
PTPRM-209ENST00000578698 CSAG1Q6PB30 78 aa1.55□□□□□ -2.16
PTPRM-209ENST00000578698 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.55□□□□□ -2.16
PTPRM-209ENST00000578698 SPTBN4Q9H254 2564 aa1.55□□□□□ -2.16
PTPRM-209ENST00000578698 SETXQ7Z333 2677 aaKnown RBP1.55□□□□□ -2.16
PTPRM-209ENST00000578698 CHD6Q8TD26 2715 aa1.55□□□□□ -2.16
PTPRM-209ENST00000578698 KMT2BQ9UMN6 2715 aaPredicted RBP1.55□□□□□ -2.16
PTPRM-209ENST00000578698 CFAP54Q96N23 3096 aa1.55□□□□□ -2.16
PTPRM-209ENST00000578698 SIP14410 1827 aa1.54□□□□□ -2.16
PTPRM-209ENST00000578698 DOCK1Q14185 1865 aa1.54□□□□□ -2.16
PTPRM-209ENST00000578698 ASH1LQ9NR48 2969 aaKnown RBP1.54□□□□□ -2.16
PTPRM-209ENST00000578698 CFAP47Q6ZTR5 3102 aa1.54□□□□□ -2.16
PTPRM-209ENST00000578698 PTPN13Q12923 2485 aa1.54□□□□□ -2.16
PTPRM-209ENST00000578698 RIF1Q5UIP0 2472 aaKnown RBP1.54□□□□□ -2.16
PTPRM-209ENST00000578698 TRGV2A0A075B6R0 118 aa1.54□□□□□ -2.16
PTPRM-209ENST00000578698 TMEM30CPA0ZSE6 113 aa1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms