RNA–Protein interactions for RNA: ENST00000578698.1

PTPRM-209, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 3

Gene PTPRM, Length 486 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-209ENST00000578698 AEBP2Q6ZN18 517 aaPredicted RBP19.08■□□□□ 0.64
PTPRM-209ENST00000578698 CHIC1Q5VXU3 224 aa17.92■□□□□ 0.46
PTPRM-209ENST00000578698 SENP3Q9H4L4 574 aaPredicted RBP16.35■□□□□ 0.21
PTPRM-209ENST00000578698 PHF23Q9BUL5 403 aaPredicted RBP16.09■□□□□ 0.17
PTPRM-209ENST00000578698 FOXD1Q16676 465 aa15.24■□□□□ 0.03
PTPRM-209ENST00000578698 POTEDQ86YR6 584 aa14.38□□□□□ -0.11
PTPRM-209ENST00000578698 MSH5O43196 834 aa14.37□□□□□ -0.11
PTPRM-209ENST00000578698 PIAS4Q8N2W9 510 aaPredicted RBP14.26□□□□□ -0.13
PTPRM-209ENST00000578698 PLPPR3Q6T4P5 718 aa14.25□□□□□ -0.13
PTPRM-209ENST00000578698 PPP6R1Q9UPN7 881 aa14.07□□□□□ -0.16
PTPRM-209ENST00000578698 ADRA2BP18089 450 aa14.06□□□□□ -0.16
PTPRM-209ENST00000578698 MAPK8IP2Q13387 824 aaPredicted RBP12.96□□□□□ -0.33
PTPRM-209ENST00000578698 DMRT2Q9Y5R5 561 aa12.91□□□□□ -0.34
PTPRM-209ENST00000578698 SCAF1Q9H7N4 1312 aaKnown RBP12.87□□□□□ -0.35
PTPRM-209ENST00000578698 DCAF8L1A6NGE4 600 aa12.52□□□□□ -0.41
PTPRM-209ENST00000578698 CACNB1Q02641 598 aaPredicted RBP12.5□□□□□ -0.41
PTPRM-209ENST00000578698 PPP4R3CPQ6ZMV5 832 aa12.46□□□□□ -0.41
PTPRM-209ENST00000578698 HOXD11P31277 338 aaPredicted RBP12.32□□□□□ -0.44
PTPRM-209ENST00000578698 CNKSR2Q8WXI2 1034 aa12.27□□□□□ -0.45
PTPRM-209ENST00000578698 RNF39Q9H2S5 420 aa12.21□□□□□ -0.45
PTPRM-209ENST00000578698 RNF216Q9NWF9 866 aaPredicted RBP12.2□□□□□ -0.46
PTPRM-209ENST00000578698 C1QBPQ07021 282 aaKnown RBP12.03□□□□□ -0.48
PTPRM-209ENST00000578698 NCBP3Q53F19 620 aaKnown RBP11.94□□□□□ -0.5
PTPRM-209ENST00000578698 DNAJC5BQ9UF47 199 aa11.89□□□□□ -0.51
PTPRM-209ENST00000578698 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.84□□□□□ -0.51
PTPRM-209ENST00000578698 NPM3O75607 178 aaKnown RBP11.74□□□□□ -0.53
PTPRM-209ENST00000578698 U3KPZ7 1027 aaPredicted RBP11.51□□□□□ -0.57
PTPRM-209ENST00000578698 CAPN15O75808 1086 aa11.47□□□□□ -0.57
PTPRM-209ENST00000578698 SPINK5Q9NQ38 1064 aaPredicted RBP11.43□□□□□ -0.58
PTPRM-209ENST00000578698 DSG3P32926 999 aa11.38□□□□□ -0.59
PTPRM-209ENST00000578698 KCNA4P22459 653 aa11.34□□□□□ -0.59
PTPRM-209ENST00000578698 POTEHQ6S545 545 aa11.25□□□□□ -0.61
PTPRM-209ENST00000578698 SLC4A2P04920 1241 aa11.24□□□□□ -0.61
PTPRM-209ENST00000578698 TRHP20396 242 aaPredicted RBP11.23□□□□□ -0.61
PTPRM-209ENST00000578698 APLP2Q06481 763 aa11.21□□□□□ -0.61
PTPRM-209ENST00000578698 ABCB7O75027 752 aa11.18□□□□□ -0.62
PTPRM-209ENST00000578698 ZNF219Q9P2Y4 722 aaPredicted RBP11.16□□□□□ -0.62
PTPRM-209ENST00000578698 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.13□□□□□ -0.63
PTPRM-209ENST00000578698 HNRNPUL2Q1KMD3 747 aaKnown RBP11.13□□□□□ -0.63
PTPRM-209ENST00000578698 SAMD1Q6SPF0 538 aaPredicted RBP11.05□□□□□ -0.64
PTPRM-209ENST00000578698 RBM42Q9BTD8 480 aaKnown RBP10.9□□□□□ -0.66
PTPRM-209ENST00000578698 MYCNP04198 464 aaPredicted RBP10.89□□□□□ -0.67
PTPRM-209ENST00000578698 POLA2Q14181 598 aa10.84□□□□□ -0.67
PTPRM-209ENST00000578698 CHRDL2Q6WN34 429 aa10.73□□□□□ -0.69
PTPRM-209ENST00000578698 SLC4A1APQ9BWU0 796 aaKnown RBP10.68□□□□□ -0.7
PTPRM-209ENST00000578698 FOXD4L1Q9NU39 408 aa10.65□□□□□ -0.7
PTPRM-209ENST00000578698 ATF5Q9Y2D1 282 aaPredicted RBP10.63□□□□□ -0.71
PTPRM-209ENST00000578698 ZBTB12Q9Y330 459 aaPredicted RBP10.61□□□□□ -0.71
PTPRM-209ENST00000578698 AKT1S1Q96B36 256 aa10.57□□□□□ -0.72
PTPRM-209ENST00000578698 OSCARQ8IYS5 282 aa10.53□□□□□ -0.72
PTPRM-209ENST00000578698 REM2Q8IYK8 340 aaPredicted RBP10.48□□□□□ -0.73
PTPRM-209ENST00000578698 SP7Q8TDD2 431 aaPredicted RBP10.44□□□□□ -0.74
PTPRM-209ENST00000578698 PIP4P2Q8N4L2 257 aa10.42□□□□□ -0.74
PTPRM-209ENST00000578698 PITPNM1O00562 1244 aa10.39□□□□□ -0.75
PTPRM-209ENST00000578698 ZBTB22O15209 634 aa10.39□□□□□ -0.75
PTPRM-209ENST00000578698 HAX1O00165 279 aa10.34□□□□□ -0.75
PTPRM-209ENST00000578698 ATXN8OSP0DMR3 200 aa10.3□□□□□ -0.76
PTPRM-209ENST00000578698 FXR2P51116 673 aaKnown RBP eCLIP10.3□□□□□ -0.76
PTPRM-209ENST00000578698 FBLN2P98095 1184 aa10.28□□□□□ -0.76
PTPRM-209ENST00000578698 SPDYE2BA6NHP3 402 aa10.25□□□□□ -0.77
PTPRM-209ENST00000578698 SPDYE6P0CI01 402 aa10.25□□□□□ -0.77
PTPRM-209ENST00000578698 SPDYE2Q495Y8 402 aa10.25□□□□□ -0.77
PTPRM-209ENST00000578698 CLEC11AQ9Y240 323 aa10.19□□□□□ -0.78
PTPRM-209ENST00000578698 PRKAR2AP13861 404 aaKnown RBP10.14□□□□□ -0.79
PTPRM-209ENST00000578698 SPDYE1Q8NFV5 336 aaPredicted RBP10.14□□□□□ -0.79
PTPRM-209ENST00000578698 EVX2Q03828 476 aa10.13□□□□□ -0.79
PTPRM-209ENST00000578698 ZNF692Q9BU19 519 aaPredicted RBP10.12□□□□□ -0.79
PTPRM-209ENST00000578698 MKRN4PQ13434 485 aaPredicted RBP10.11□□□□□ -0.79
PTPRM-209ENST00000578698 SSUH2Q9Y2M2 353 aa10.05□□□□□ -0.8
PTPRM-209ENST00000578698 CHADLQ6NUI6 762 aa9.99□□□□□ -0.81
PTPRM-209ENST00000578698 C19orf67A6NJJ6 358 aa9.98□□□□□ -0.81
PTPRM-209ENST00000578698 PABPN1Q86U42 306 aaKnown RBP eCLIP9.96□□□□□ -0.82
PTPRM-209ENST00000578698 PRR29P0C7W0 189 aa9.95□□□□□ -0.82
PTPRM-209ENST00000578698 GABBR2O75899 941 aa9.91□□□□□ -0.82
PTPRM-209ENST00000578698 CD44P16070 742 aaKnown RBP9.81□□□□□ -0.84
PTPRM-209ENST00000578698 LHX8Q68G74 356 aa9.79□□□□□ -0.84
PTPRM-209ENST00000578698 FARP1Q9Y4F1 1045 aaPredicted RBP9.78□□□□□ -0.84
PTPRM-209ENST00000578698 CSRNP3Q8WYN3 585 aa9.72□□□□□ -0.85
PTPRM-209ENST00000578698 POTEIP0CG38 1075 aa9.66□□□□□ -0.86
PTPRM-209ENST00000578698 DCBLD2Q96PD2 775 aa9.66□□□□□ -0.86
PTPRM-209ENST00000578698 CLCN6P51797 869 aa9.65□□□□□ -0.86
PTPRM-209ENST00000578698 ZRANB1Q9UGI0 708 aa9.64□□□□□ -0.87
PTPRM-209ENST00000578698 EHMT2Q96KQ7 1210 aa9.63□□□□□ -0.87
PTPRM-209ENST00000578698 STAG3Q9UJ98 1225 aa9.63□□□□□ -0.87
PTPRM-209ENST00000578698 CREBZFQ9NS37 354 aa9.61□□□□□ -0.87
PTPRM-209ENST00000578698 ZNF579Q8NAF0 562 aaKnown RBP9.6□□□□□ -0.87
PTPRM-209ENST00000578698 SPDYE4A6NLX3 237 aa9.58□□□□□ -0.88
PTPRM-209ENST00000578698 PAK3O75914 559 aaPredicted RBP9.54□□□□□ -0.88
PTPRM-209ENST00000578698 GALR2O43603 387 aaPredicted RBP9.53□□□□□ -0.88
PTPRM-209ENST00000578698 PHF12Q96QT6 1004 aa9.48□□□□□ -0.89
PTPRM-209ENST00000578698 NPM1P06748 294 aaKnown RBP eCLIP9.47□□□□□ -0.89
PTPRM-209ENST00000578698 PLSCR2Q9NRY7 297 aa9.42□□□□□ -0.9
PTPRM-209ENST00000578698 MNX1P50219 401 aaPredicted RBP9.38□□□□□ -0.91
PTPRM-209ENST00000578698 OTUD5Q96G74 571 aa9.37□□□□□ -0.91
PTPRM-209ENST00000578698 POTEB2H3BUK9 544 aa9.36□□□□□ -0.91
PTPRM-209ENST00000578698 MS4A3Q96HJ5 214 aa9.34□□□□□ -0.91
PTPRM-209ENST00000578698 PELP1Q8IZL8 1130 aaKnown RBP9.33□□□□□ -0.92
PTPRM-209ENST00000578698 TSPYL2Q9H2G4 693 aaPredicted RBP9.32□□□□□ -0.92
PTPRM-209ENST00000578698 METRNQ9UJH8 293 aa9.3□□□□□ -0.92
PTPRM-209ENST00000578698 ASTLQ6HA08 431 aaPredicted RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms