RNA–Protein interactions for RNA: ENST00000576708.5

NUP88-212, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-212ENST00000576708 IQCJQ1A5X6 159 aa3.97□□□□□ -1.77
NUP88-212ENST00000576708 SDIM1Q6ZPB5 146 aa3.97□□□□□ -1.77
NUP88-212ENST00000576708 C9orf62Q8N4C0 152 aa3.97□□□□□ -1.77
NUP88-212ENST00000576708 FER1L6-AS1Q8NA97 138 aa3.97□□□□□ -1.77
NUP88-212ENST00000576708 C20orf203Q8NBC4 194 aa3.97□□□□□ -1.77
NUP88-212ENST00000576708 C11orf52Q96A22 123 aa3.97□□□□□ -1.77
NUP88-212ENST00000576708 AP1S3Q96PC3 154 aa3.97□□□□□ -1.77
NUP88-212ENST00000576708 PRO0628Q9UI54 55 aa3.97□□□□□ -1.77
NUP88-212ENST00000576708 TRBV20OR9-2A0A075B6H5 130 aa3.96□□□□□ -1.78
NUP88-212ENST00000576708 C19orf71A6NCJ1 209 aa3.96□□□□□ -1.78
NUP88-212ENST00000576708 HMSDA8MTL9 139 aa3.96□□□□□ -1.78
NUP88-212ENST00000576708 K7ERU9 68 aa3.96□□□□□ -1.78
NUP88-212ENST00000576708 LYZL1Q6UWQ5 148 aa3.96□□□□□ -1.78
NUP88-212ENST00000576708 MRAP2Q96G30 205 aa3.96□□□□□ -1.78
NUP88-212ENST00000576708 ESDP10768 282 aa3.95□□□□□ -1.78
NUP88-212ENST00000576708 CACNG7P62955 275 aa3.95□□□□□ -1.78
NUP88-212ENST00000576708 RASL11AQ6T310 242 aa3.95□□□□□ -1.78
NUP88-212ENST00000576708 COMMD7Q86VX2 200 aa3.95□□□□□ -1.78
NUP88-212ENST00000576708 LINC01561Q8N1V8 128 aa3.95□□□□□ -1.78
NUP88-212ENST00000576708 GATD1Q8NB37 220 aa3.95□□□□□ -1.78
NUP88-212ENST00000576708 TMEM243Q9BU79 118 aa3.95□□□□□ -1.78
NUP88-212ENST00000576708 MANBALQ9NQG1 85 aa3.95□□□□□ -1.78
NUP88-212ENST00000576708 A0A087WYN8 130 aa3.94□□□□□ -1.78
NUP88-212ENST00000576708 TRAV1-1A0A0B4J248 108 aa3.94□□□□□ -1.78
NUP88-212ENST00000576708 TRAV26-2A0A0B4J265 109 aa3.94□□□□□ -1.78
NUP88-212ENST00000576708 IGKV3OR2-268A0A0C4DH90 116 aa3.94□□□□□ -1.78
NUP88-212ENST00000576708 H7C1H1 209 aa3.94□□□□□ -1.78
NUP88-212ENST00000576708 P01737 135 aa3.94□□□□□ -1.78
NUP88-212ENST00000576708 MT1HL1P0DM35 61 aa3.94□□□□□ -1.78
NUP88-212ENST00000576708 NTF3P20783 257 aa3.94□□□□□ -1.78
NUP88-212ENST00000576708 GNG4P50150 75 aa3.94□□□□□ -1.78
NUP88-212ENST00000576708 FOXA3P55318 350 aaPredicted RBP3.94□□□□□ -1.78
NUP88-212ENST00000576708 CNBPP62633 177 aaKnown RBP3.94□□□□□ -1.78
NUP88-212ENST00000576708 EIF5AP63241 154 aaKnown RBP3.94□□□□□ -1.78
NUP88-212ENST00000576708 OCIAD2Q56VL3 154 aa3.94□□□□□ -1.78
NUP88-212ENST00000576708 OR13C6PQ8NH95 151 aa3.94□□□□□ -1.78
NUP88-212ENST00000576708 DPH3Q96FX2 82 aa3.94□□□□□ -1.78
NUP88-212ENST00000576708 RNASE7Q9H1E1 156 aaKnown RBP3.94□□□□□ -1.78
NUP88-212ENST00000576708 DPH3P1Q9H4G8 78 aa3.94□□□□□ -1.78
NUP88-212ENST00000576708 MED9Q9NWA0 146 aa3.94□□□□□ -1.78
NUP88-212ENST00000576708 IGHV3-64A0A075B6Q5 118 aa3.93□□□□□ -1.78
NUP88-212ENST00000576708 TRAV8-4A0A0B4J246 113 aa3.93□□□□□ -1.78
NUP88-212ENST00000576708 UBE2L6O14933 153 aa3.93□□□□□ -1.78
NUP88-212ENST00000576708 TRGC1P0CF51 173 aa3.93□□□□□ -1.78
NUP88-212ENST00000576708 MEF2BQ02080 365 aaPredicted RBP3.93□□□□□ -1.78
NUP88-212ENST00000576708 CIRBPQ14011 172 aaKnown RBP3.93□□□□□ -1.78
NUP88-212ENST00000576708 HIGD2BQ4VC39 106 aa3.93□□□□□ -1.78
NUP88-212ENST00000576708 LINC01551Q86U37 167 aa3.93□□□□□ -1.78
NUP88-212ENST00000576708 C15orf56Q8N910 161 aa3.93□□□□□ -1.78
NUP88-212ENST00000576708 RPL39LQ96EH5 51 aaKnown RBP3.93□□□□□ -1.78
NUP88-212ENST00000576708 BTF3L4Q96K17 158 aa3.93□□□□□ -1.78
NUP88-212ENST00000576708 CARHSP1Q9Y2V2 147 aaKnown RBP3.93□□□□□ -1.78
NUP88-212ENST00000576708 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.92□□□□□ -1.78
NUP88-212ENST00000576708 C20orf202A1L168 122 aa3.92□□□□□ -1.78
NUP88-212ENST00000576708 IGKV2-29A2NJV5 120 aaPredicted RBP3.92□□□□□ -1.78
NUP88-212ENST00000576708 F2Z2F3 143 aa3.92□□□□□ -1.78
NUP88-212ENST00000576708 M0R143 59 aa3.92□□□□□ -1.78
NUP88-212ENST00000576708 GAS8-AS1O95177 125 aa3.92□□□□□ -1.78
NUP88-212ENST00000576708 BCL2P10415 239 aa3.92□□□□□ -1.78
NUP88-212ENST00000576708 CTRLP40313 264 aa3.92□□□□□ -1.78
NUP88-212ENST00000576708 COX6A2Q02221 97 aa3.92□□□□□ -1.78
NUP88-212ENST00000576708 Q75L30 129 aa3.92□□□□□ -1.78
NUP88-212ENST00000576708 SPACA4Q8TDM5 124 aa3.92□□□□□ -1.78
NUP88-212ENST00000576708 GTSF1Q8WW33 167 aa3.92□□□□□ -1.78
NUP88-212ENST00000576708 PGLYRP4Q96LB8 373 aa3.92□□□□□ -1.78
NUP88-212ENST00000576708 IGKV2-24A0A0C4DH68 120 aa3.91□□□□□ -1.78
NUP88-212ENST00000576708 PHOX2AO14813 284 aa3.91□□□□□ -1.78
NUP88-212ENST00000576708 C1orf195Q5TG92 126 aa3.91□□□□□ -1.78
NUP88-212ENST00000576708 TEX261Q6UWH6 196 aa3.91□□□□□ -1.78
NUP88-212ENST00000576708 SMIM29Q86T20 159 aa3.91□□□□□ -1.78
NUP88-212ENST00000576708 CHCHD10Q8WYQ3 142 aaPredicted RBP3.91□□□□□ -1.78
NUP88-212ENST00000576708 LINC00526Q96FQ7 95 aa3.91□□□□□ -1.78
NUP88-212ENST00000576708 RPP21Q9H633 154 aaKnown RBP3.91□□□□□ -1.78
NUP88-212ENST00000576708 PLAC8Q9NZF1 115 aa3.91□□□□□ -1.78
NUP88-212ENST00000576708 TNXBP22105 4242 aa3.91□□□□□ -1.78
NUP88-212ENST00000576708 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.9□□□□□ -1.79
NUP88-212ENST00000576708 FGF6P10767 208 aa3.9□□□□□ -1.79
NUP88-212ENST00000576708 RPS10P46783 165 aaKnown RBP3.9□□□□□ -1.79
NUP88-212ENST00000576708 RPL24P83731 157 aaKnown RBP3.9□□□□□ -1.79
NUP88-212ENST00000576708 AMMECR1LQ6DCA0 310 aa3.9□□□□□ -1.79
NUP88-212ENST00000576708 EIF5AL1Q6IS14 154 aaKnown RBP3.9□□□□□ -1.79
NUP88-212ENST00000576708 Q6ZRU5 148 aa3.9□□□□□ -1.79
NUP88-212ENST00000576708 FA2HQ7L5A8 372 aa3.9□□□□□ -1.79
NUP88-212ENST00000576708 ORAOV1Q8WV07 137 aa3.9□□□□□ -1.79
NUP88-212ENST00000576708 SNHG12Q9BXW3 62 aa3.9□□□□□ -1.79
NUP88-212ENST00000576708 CNFNQ9BYD5 112 aa3.9□□□□□ -1.79
NUP88-212ENST00000576708 HSPB8Q9UJY1 196 aa3.9□□□□□ -1.79
NUP88-212ENST00000576708 A0A096LNI7 61 aa3.89□□□□□ -1.79
NUP88-212ENST00000576708 SDHAF1A6NFY7 115 aa3.89□□□□□ -1.79
NUP88-212ENST00000576708 CCL25O15444 150 aa3.89□□□□□ -1.79
NUP88-212ENST00000576708 APCSP02743 223 aa3.89□□□□□ -1.79
NUP88-212ENST00000576708 XCL1P47992 114 aa3.89□□□□□ -1.79
NUP88-212ENST00000576708 STPG4Q8N801 248 aa3.89□□□□□ -1.79
NUP88-212ENST00000576708 RNF185Q96GF1 192 aa3.89□□□□□ -1.79
NUP88-212ENST00000576708 CST9LQ9H4G1 147 aa3.89□□□□□ -1.79
NUP88-212ENST00000576708 ERG28Q9UKR5 140 aa3.89□□□□□ -1.79
NUP88-212ENST00000576708 GVQW2A0A096LPI5 108 aaPredicted RBP3.88□□□□□ -1.79
NUP88-212ENST00000576708 LINC00959A0A1B0GUT2 108 aa3.88□□□□□ -1.79
NUP88-212ENST00000576708 TSHBP01222 138 aa3.88□□□□□ -1.79
NUP88-212ENST00000576708 RAB5BP61020 215 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms