RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TIMM17BO60830 172 aa7.15□□□□□ -1.26
VPS53-220ENST00000576149 RETNQ9HD89 108 aa7.15□□□□□ -1.26
VPS53-220ENST00000576149 CDC42SE2Q9NRR3 84 aa7.15□□□□□ -1.26
VPS53-220ENST00000576149 ATP6V0E2Q8NHE4 81 aa7.15□□□□□ -1.27
VPS53-220ENST00000576149 RNF183Q96D59 192 aa7.15□□□□□ -1.27
VPS53-220ENST00000576149 TMEM243Q9BU79 118 aa7.14□□□□□ -1.27
VPS53-220ENST00000576149 MTORP42345 2549 aa7.14□□□□□ -1.27
VPS53-220ENST00000576149 ITPR2Q14571 2701 aa7.14□□□□□ -1.27
VPS53-220ENST00000576149 TRAV13-1A0A0B4J241 112 aa7.13□□□□□ -1.27
VPS53-220ENST00000576149 LOC100131303A0A0U1RQF7 123 aa7.13□□□□□ -1.27
VPS53-220ENST00000576149 H7C2G1 150 aa7.13□□□□□ -1.27
VPS53-220ENST00000576149 SETD2Q9BYW2 2564 aaPredicted RBP7.13□□□□□ -1.27
VPS53-220ENST00000576149 SETXQ7Z333 2677 aaKnown RBP7.13□□□□□ -1.27
VPS53-220ENST00000576149 TRGV4A0A0C4DH28 118 aa7.13□□□□□ -1.27
VPS53-220ENST00000576149 SMIM1B2RUZ4 78 aa7.13□□□□□ -1.27
VPS53-220ENST00000576149 INSL3P51460 131 aa7.13□□□□□ -1.27
VPS53-220ENST00000576149 LINC00482Q8N8I6 264 aa7.13□□□□□ -1.27
VPS53-220ENST00000576149 KMT2BQ9UMN6 2715 aaPredicted RBP7.13□□□□□ -1.27
VPS53-220ENST00000576149 H7C423 109 aa7.12□□□□□ -1.27
VPS53-220ENST00000576149 UBE2L6O14933 153 aa7.12□□□□□ -1.27
VPS53-220ENST00000576149 LY6G6DO95868 133 aa7.12□□□□□ -1.27
VPS53-220ENST00000576149 IFITM1P13164 125 aa7.12□□□□□ -1.27
VPS53-220ENST00000576149 FOXI1Q12951 378 aa7.12□□□□□ -1.27
VPS53-220ENST00000576149 FHL2Q14192 279 aa7.12□□□□□ -1.27
VPS53-220ENST00000576149 C4orf26Q17RF5 130 aa7.12□□□□□ -1.27
VPS53-220ENST00000576149 UNC79Q9P2D8 2635 aa7.12□□□□□ -1.27
VPS53-220ENST00000576149 Q1RN00 199 aa7.12□□□□□ -1.27
VPS53-220ENST00000576149 TRBV30A0A0K0K1B3 111 aa7.11□□□□□ -1.27
VPS53-220ENST00000576149 OXTP01178 125 aa7.11□□□□□ -1.27
VPS53-220ENST00000576149 NPC2P61916 151 aa7.11□□□□□ -1.27
VPS53-220ENST00000576149 Q9H8V8 135 aa7.11□□□□□ -1.27
VPS53-220ENST00000576149 GAGE12HA6NDE8 117 aa7.11□□□□□ -1.27
VPS53-220ENST00000576149 CIRBPQ14011 172 aaKnown RBP7.11□□□□□ -1.27
VPS53-220ENST00000576149 TEN1Q86WV5 123 aa7.11□□□□□ -1.27
VPS53-220ENST00000576149 JMJD1CQ15652 2540 aa7.11□□□□□ -1.27
VPS53-220ENST00000576149 HELZ2Q9BYK8 2649 aaKnown RBP7.11□□□□□ -1.27
VPS53-220ENST00000576149 NIPBLQ6KC79 2804 aaeCLIP7.11□□□□□ -1.27
VPS53-220ENST00000576149 DAND5Q8N907 189 aa7.1□□□□□ -1.27
VPS53-220ENST00000576149 SPATA25Q9BR10 227 aa7.1□□□□□ -1.27
VPS53-220ENST00000576149 TRIAP1O43715 76 aa7.1□□□□□ -1.27
VPS53-220ENST00000576149 HIVEP2P31629 2446 aa7.09□□□□□ -1.27
VPS53-220ENST00000576149 TRBV6-8A0A0A6YYG3 113 aa7.09□□□□□ -1.27
VPS53-220ENST00000576149 ATXN8Q156A1 80 aa7.09□□□□□ -1.27
VPS53-220ENST00000576149 LINC00612Q8N6U2 182 aa7.09□□□□□ -1.27
VPS53-220ENST00000576149 ZNF625Q96I27 306 aaPredicted RBP7.09□□□□□ -1.27
VPS53-220ENST00000576149 NOTCH3Q9UM47 2321 aa7.09□□□□□ -1.27
VPS53-220ENST00000576149 CRLF1O75462 422 aa7.09□□□□□ -1.27
VPS53-220ENST00000576149 CARD19Q96LW7 228 aa7.09□□□□□ -1.27
VPS53-220ENST00000576149 ICOSQ9Y6W8 199 aa7.09□□□□□ -1.27
VPS53-220ENST00000576149 C9JAW5 83 aa7.08□□□□□ -1.28
VPS53-220ENST00000576149 SLC25A20O43772 301 aa7.08□□□□□ -1.28
VPS53-220ENST00000576149 LINC00308Q8TCZ7 52 aa7.08□□□□□ -1.28
VPS53-220ENST00000576149 PPDPFLQ8WWR9 84 aa7.08□□□□□ -1.28
VPS53-220ENST00000576149 DEFB130BP0DP73 79 aa7.08□□□□□ -1.28
VPS53-220ENST00000576149 DEFB130AP0DP74 79 aa7.08□□□□□ -1.28
VPS53-220ENST00000576149 FAM19A1Q7Z5A9 133 aa7.08□□□□□ -1.28
VPS53-220ENST00000576149 PRIMA1Q86XR5 153 aa7.08□□□□□ -1.28
VPS53-220ENST00000576149 FASNP49327 2511 aaKnown RBP7.07□□□□□ -1.28
VPS53-220ENST00000576149 ANKRD29Q8N6D5 301 aa7.07□□□□□ -1.28
VPS53-220ENST00000576149 X6R8D5 127 aa7.07□□□□□ -1.28
VPS53-220ENST00000576149 IGLV4-60A0A075B6I1 120 aa7.07□□□□□ -1.28
VPS53-220ENST00000576149 COX6CP09669 75 aa7.06□□□□□ -1.28
VPS53-220ENST00000576149 RPL13AP40429 203 aaKnown RBP7.06□□□□□ -1.28
VPS53-220ENST00000576149 SPATA3Q8NHX4 192 aa7.06□□□□□ -1.28
VPS53-220ENST00000576149 LINC01600Q96MT4 127 aa7.06□□□□□ -1.28
VPS53-220ENST00000576149 CHCHD5Q9BSY4 110 aa7.06□□□□□ -1.28
VPS53-220ENST00000576149 INAFM1C9JVW0 142 aa7.06□□□□□ -1.28
VPS53-220ENST00000576149 C9orf66Q5T8R8 295 aa7.06□□□□□ -1.28
VPS53-220ENST00000576149 SOSTDC1Q6X4U4 206 aa7.06□□□□□ -1.28
VPS53-220ENST00000576149 OR13C6PQ8NH95 151 aa7.06□□□□□ -1.28
VPS53-220ENST00000576149 COPS9Q8WXC6 57 aa7.06□□□□□ -1.28
VPS53-220ENST00000576149 MEIG1Q5JSS6 88 aa7.05□□□□□ -1.28
VPS53-220ENST00000576149 PRO0628Q9UI54 55 aa7.05□□□□□ -1.28
VPS53-220ENST00000576149 C2CD3Q4AC94 2353 aa7.05□□□□□ -1.28
VPS53-220ENST00000576149 FAM19A5Q7Z5A7 132 aaPredicted RBP7.05□□□□□ -1.28
VPS53-220ENST00000576149 IGHV3OR16-9A0A0B4J2B5 98 aa7.04□□□□□ -1.28
VPS53-220ENST00000576149 TRBV10-2A0A0K0K1G8 114 aa7.04□□□□□ -1.28
VPS53-220ENST00000576149 COX7B2Q8TF08 81 aa7.04□□□□□ -1.28
VPS53-220ENST00000576149 IGKV3OR2-268A0A0C4DH90 116 aa7.03□□□□□ -1.28
VPS53-220ENST00000576149 GYPEP15421 78 aa7.03□□□□□ -1.28
VPS53-220ENST00000576149 H3BS24 57 aa7.03□□□□□ -1.28
VPS53-220ENST00000576149 XGP55808 180 aa7.03□□□□□ -1.28
VPS53-220ENST00000576149 SERTAD4-AS1Q5TG53 156 aa7.03□□□□□ -1.28
VPS53-220ENST00000576149 PRO0255Q9UI72 69 aa7.03□□□□□ -1.28
VPS53-220ENST00000576149 LST1O00453 97 aa7.02□□□□□ -1.28
VPS53-220ENST00000576149 CLEC2BQ92478 149 aa7.02□□□□□ -1.28
VPS53-220ENST00000576149 A0A087WZ39 114 aa7.02□□□□□ -1.29
VPS53-220ENST00000576149 LYRM9A8MSI8 78 aa7.01□□□□□ -1.29
VPS53-220ENST00000576149 FAM222AQ5U5X8 452 aa7.01□□□□□ -1.29
VPS53-220ENST00000576149 LINC00959A0A1B0GUT2 108 aa7.01□□□□□ -1.29
VPS53-220ENST00000576149 A0A1B0GUV1 79 aa7.01□□□□□ -1.29
VPS53-220ENST00000576149 NTN5Q8WTR8 489 aaPredicted RBP7.01□□□□□ -1.29
VPS53-220ENST00000576149 TOMM7Q9P0U1 55 aa7.01□□□□□ -1.29
VPS53-220ENST00000576149 PKIGQ9Y2B9 76 aa7.01□□□□□ -1.29
VPS53-220ENST00000576149 USP17L23D6RBM5 183 aa7□□□□□ -1.29
VPS53-220ENST00000576149 H3BT86 120 aa7□□□□□ -1.29
VPS53-220ENST00000576149 VPREB1P12018 145 aa7□□□□□ -1.29
VPS53-220ENST00000576149 DEFB135Q30KP9 77 aa7□□□□□ -1.29
VPS53-220ENST00000576149 C2orf82Q6UX34 121 aa7□□□□□ -1.29
VPS53-220ENST00000576149 ANAPC13Q9BS18 74 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms