RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 LINC01561Q8N1V8 128 aa5.55□□□□□ -1.52
VPS39-213ENST00000570062 B9D2Q9BPU9 175 aa5.55□□□□□ -1.52
VPS39-213ENST00000570062 TRRAPQ9Y4A5 3859 aa5.54□□□□□ -1.52
VPS39-213ENST00000570062 IGLV5-45A0A087WSX0 123 aa5.54□□□□□ -1.52
VPS39-213ENST00000570062 DEFB131BA0A096LNP1 70 aa5.54□□□□□ -1.52
VPS39-213ENST00000570062 IGHV1-58A0A0C4DH39 117 aa5.54□□□□□ -1.52
VPS39-213ENST00000570062 A0A0J9YWU9 116 aa5.54□□□□□ -1.52
VPS39-213ENST00000570062 A0A0J9YY99 117 aa5.54□□□□□ -1.52
VPS39-213ENST00000570062 MYMXA0A1B0GTQ4 84 aa5.54□□□□□ -1.52
VPS39-213ENST00000570062 TMEM223A0PJW6 202 aa5.54□□□□□ -1.52
VPS39-213ENST00000570062 LGALS3P17931 250 aaKnown RBP5.54□□□□□ -1.52
VPS39-213ENST00000570062 SS18Q15532 418 aa5.54□□□□□ -1.52
VPS39-213ENST00000570062 Q6ZUT4 128 aa5.54□□□□□ -1.52
VPS39-213ENST00000570062 A0A0J9YXV3 536 aa5.53□□□□□ -1.52
VPS39-213ENST00000570062 ZNF22P17026 224 aaPredicted RBP5.53□□□□□ -1.52
VPS39-213ENST00000570062 CTAG1AP78358 180 aa5.53□□□□□ -1.52
VPS39-213ENST00000570062 HSD52Q0P140 79 aa5.53□□□□□ -1.52
VPS39-213ENST00000570062 GAGE6Q13070 117 aa5.53□□□□□ -1.52
VPS39-213ENST00000570062 LINC00469Q8N7U9 141 aa5.53□□□□□ -1.52
VPS39-213ENST00000570062 MRAPQ8TCY5 172 aa5.53□□□□□ -1.52
VPS39-213ENST00000570062 DEFB104AQ8WTQ1 72 aa5.53□□□□□ -1.52
VPS39-213ENST00000570062 OPRPNQ99935 248 aaPredicted RBP5.53□□□□□ -1.52
VPS39-213ENST00000570062 A0A096LPF7 62 aa5.52□□□□□ -1.53
VPS39-213ENST00000570062 J3QQQ9 107 aa5.52□□□□□ -1.53
VPS39-213ENST00000570062 COL5A1-AS1Q5SY13 56 aa5.52□□□□□ -1.53
VPS39-213ENST00000570062 LINC00242Q5T6M2 205 aa5.52□□□□□ -1.53
VPS39-213ENST00000570062 CEMP1Q6PRD7 247 aaPredicted RBP5.52□□□□□ -1.53
VPS39-213ENST00000570062 LYPD5Q6UWN5 251 aa5.52□□□□□ -1.53
VPS39-213ENST00000570062 Q6ZTC4 211 aa5.52□□□□□ -1.53
VPS39-213ENST00000570062 Q6ZVH6 145 aa5.52□□□□□ -1.53
VPS39-213ENST00000570062 COPS9Q8WXC6 57 aa5.52□□□□□ -1.53
VPS39-213ENST00000570062 FAM104AQ969W3 186 aa5.52□□□□□ -1.53
VPS39-213ENST00000570062 RETNQ9HD89 108 aa5.52□□□□□ -1.53
VPS39-213ENST00000570062 EPPK1P58107 5090 aaKnown RBP5.52□□□□□ -1.53
VPS39-213ENST00000570062 TRAV13-1A0A0B4J241 112 aa5.51□□□□□ -1.53
VPS39-213ENST00000570062 TRAV8-4A0A0B4J246 113 aa5.51□□□□□ -1.53
VPS39-213ENST00000570062 A6NDN8 102 aa5.51□□□□□ -1.53
VPS39-213ENST00000570062 ZNF815PA8K554 130 aa5.51□□□□□ -1.53
VPS39-213ENST00000570062 K7EP13 123 aa5.51□□□□□ -1.53
VPS39-213ENST00000570062 TCTAP57738 103 aa5.51□□□□□ -1.53
VPS39-213ENST00000570062 RBX1P62877 108 aa5.51□□□□□ -1.53
VPS39-213ENST00000570062 CIRBPQ14011 172 aaKnown RBP5.51□□□□□ -1.53
VPS39-213ENST00000570062 SCGB1D4Q6XE38 83 aa5.51□□□□□ -1.53
VPS39-213ENST00000570062 PCP2Q8IVA1 136 aa5.51□□□□□ -1.53
VPS39-213ENST00000570062 IGKV2D-26A0A0A0MRZ7 120 aa5.5□□□□□ -1.53
VPS39-213ENST00000570062 LINC00959A0A1B0GUT2 108 aa5.5□□□□□ -1.53
VPS39-213ENST00000570062 HERV-K104P63124 156 aa5.5□□□□□ -1.53
VPS39-213ENST00000570062 TMEM238C9JI98 176 aa5.49□□□□□ -1.53
VPS39-213ENST00000570062 IGHV3-30-3P0DP02 117 aa5.49□□□□□ -1.53
VPS39-213ENST00000570062 CCL18P55774 89 aa5.49□□□□□ -1.53
VPS39-213ENST00000570062 NANOS2P60321 138 aaKnown RBP5.49□□□□□ -1.53
VPS39-213ENST00000570062 ZFAND6Q6FIF0 208 aa5.49□□□□□ -1.53
VPS39-213ENST00000570062 SNHG12Q9BXW3 62 aa5.49□□□□□ -1.53
VPS39-213ENST00000570062 SPANXB1Q9NS25 103 aaPredicted RBP5.49□□□□□ -1.53
VPS39-213ENST00000570062 CDKN2A-AS1Q9UH64 79 aa5.49□□□□□ -1.53
VPS39-213ENST00000570062 NACAE9PAV3 2078 aa5.48□□□□□ -1.53
VPS39-213ENST00000570062 IGLV4-60A0A075B6I1 120 aa5.48□□□□□ -1.53
VPS39-213ENST00000570062 A0A087WZ39 114 aa5.48□□□□□ -1.53
VPS39-213ENST00000570062 IGLV5-39A0A0G2JS06 123 aa5.48□□□□□ -1.53
VPS39-213ENST00000570062 A0A0J9YXY3 114 aa5.48□□□□□ -1.53
VPS39-213ENST00000570062 TIMM17BO60830 172 aa5.48□□□□□ -1.53
VPS39-213ENST00000570062 APOMO95445 188 aa5.48□□□□□ -1.53
VPS39-213ENST00000570062 CRPP02741 224 aa5.48□□□□□ -1.53
VPS39-213ENST00000570062 PRB2P02812 416 aaPredicted RBP5.48□□□□□ -1.53
VPS39-213ENST00000570062 ANGP03950 147 aaKnown RBP5.48□□□□□ -1.53
VPS39-213ENST00000570062 SRSF9Q13242 221 aaKnown RBP eCLIP5.48□□□□□ -1.53
VPS39-213ENST00000570062 MPV17L2Q567V2 206 aa5.48□□□□□ -1.53
VPS39-213ENST00000570062 RNASE13Q5GAN3 156 aaKnown RBP5.48□□□□□ -1.53
VPS39-213ENST00000570062 CD164L2Q6UWJ8 174 aa5.48□□□□□ -1.53
VPS39-213ENST00000570062 C2orf91Q6ZV80 131 aa5.48□□□□□ -1.53
VPS39-213ENST00000570062 ORAOV1Q8WV07 137 aa5.48□□□□□ -1.53
VPS39-213ENST00000570062 HIST1H4GQ99525 98 aa5.48□□□□□ -1.53
VPS39-213ENST00000570062 TM2D2Q9BX73 214 aa5.48□□□□□ -1.53
VPS39-213ENST00000570062 DNAH3Q8TD57 4116 aa5.48□□□□□ -1.53
VPS39-213ENST00000570062 CMYA5Q8N3K9 4069 aa5.47□□□□□ -1.53
VPS39-213ENST00000570062 IGHV3OR16-9A0A0B4J2B5 98 aa5.47□□□□□ -1.53
VPS39-213ENST00000570062 NDUFA1O15239 70 aa5.47□□□□□ -1.53
VPS39-213ENST00000570062 HINT1P49773 126 aaPredicted RBP5.47□□□□□ -1.53
VPS39-213ENST00000570062 PTTG1IPP53801 180 aa5.47□□□□□ -1.53
VPS39-213ENST00000570062 REG3AQ06141 175 aa5.47□□□□□ -1.53
VPS39-213ENST00000570062 MIAQ16674 131 aa5.47□□□□□ -1.53
VPS39-213ENST00000570062 LINC01556Q5JQF7 62 aa5.47□□□□□ -1.53
VPS39-213ENST00000570062 BVES-AS1Q5T3Y7 98 aa5.47□□□□□ -1.53
VPS39-213ENST00000570062 KRTAP5-3Q6L8H2 238 aa5.47□□□□□ -1.53
VPS39-213ENST00000570062 CEND1Q8N111 149 aa5.47□□□□□ -1.53
VPS39-213ENST00000570062 MAPKAPK5-AS1Q8N8E1 139 aa5.47□□□□□ -1.53
VPS39-213ENST00000570062 PPDPFQ9H3Y8 114 aa5.47□□□□□ -1.53
VPS39-213ENST00000570062 PRR34Q9NV39 138 aa5.47□□□□□ -1.53
VPS39-213ENST00000570062 TP73-AS1Q9UF72 201 aa5.47□□□□□ -1.53
VPS39-213ENST00000570062 NDUFA12Q9UI09 145 aa5.47□□□□□ -1.53
VPS39-213ENST00000570062 KLK5Q9Y337 293 aaPredicted RBP5.47□□□□□ -1.53
VPS39-213ENST00000570062 COX7A2LO14548 114 aa5.46□□□□□ -1.54
VPS39-213ENST00000570062 PRSS2P07478 247 aa5.46□□□□□ -1.54
VPS39-213ENST00000570062 IFITM1P13164 125 aa5.46□□□□□ -1.54
VPS39-213ENST00000570062 CXCL5P42830 114 aa5.46□□□□□ -1.54
VPS39-213ENST00000570062 BATFQ16520 125 aa5.46□□□□□ -1.54
VPS39-213ENST00000570062 LINC00269Q8N2A0 174 aa5.46□□□□□ -1.54
VPS39-213ENST00000570062 C10orf126Q8N4M7 172 aa5.46□□□□□ -1.54
VPS39-213ENST00000570062 MUC7Q8TAX7 377 aa5.46□□□□□ -1.54
VPS39-213ENST00000570062 SMIM1B2RUZ4 78 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms