RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 COX7B2Q8TF08 81 aa6.58□□□□□ -1.36
VPS39-205ENST00000562258 XAGE1AQ9HD64 81 aa6.58□□□□□ -1.36
VPS39-205ENST00000562258 TIRAPP58753 221 aa6.58□□□□□ -1.36
VPS39-205ENST00000562258 TOMM6Q96B49 74 aa6.58□□□□□ -1.36
VPS39-205ENST00000562258 TIMM17AQ99595 171 aa6.58□□□□□ -1.36
VPS39-205ENST00000562258 SPCS1Q9Y6A9 102 aa6.58□□□□□ -1.36
VPS39-205ENST00000562258 WFDC10BQ8IUB3 73 aa6.58□□□□□ -1.36
VPS39-205ENST00000562258 ZFHX4Q86UP3 3567 aa6.58□□□□□ -1.36
VPS39-205ENST00000562258 MXRA5Q9NR99 2828 aa6.58□□□□□ -1.36
VPS39-205ENST00000562258 ANKRD39Q53RE8 183 aa6.58□□□□□ -1.36
VPS39-205ENST00000562258 SCRT2Q9NQ03 307 aa6.57□□□□□ -1.36
VPS39-205ENST00000562258 A8MZ25 164 aa6.57□□□□□ -1.36
VPS39-205ENST00000562258 UBE2D3P61077 147 aa6.57□□□□□ -1.36
VPS39-205ENST00000562258 UBE2D2P62837 147 aa6.57□□□□□ -1.36
VPS39-205ENST00000562258 HSD52Q0P140 79 aa6.57□□□□□ -1.36
VPS39-205ENST00000562258 Q9UF83 564 aa6.57□□□□□ -1.36
VPS39-205ENST00000562258 X6R8D5 127 aa6.57□□□□□ -1.36
VPS39-205ENST00000562258 IGLV4-3A0A075B6K6 122 aa6.57□□□□□ -1.36
VPS39-205ENST00000562258 TRBV27A0A0K0K1C4 114 aa6.57□□□□□ -1.36
VPS39-205ENST00000562258 NRACQ8N912 160 aa6.56□□□□□ -1.36
VPS39-205ENST00000562258 LAMTOR3Q9UHA4 124 aa6.56□□□□□ -1.36
VPS39-205ENST00000562258 TSHBP01222 138 aa6.56□□□□□ -1.36
VPS39-205ENST00000562258 POLR2KP53803 58 aaKnown RBP6.56□□□□□ -1.36
VPS39-205ENST00000562258 MTURNQ8N3F0 131 aa6.56□□□□□ -1.36
VPS39-205ENST00000562258 COX11Q9Y6N1 276 aa6.56□□□□□ -1.36
VPS39-205ENST00000562258 PGPEP1Q9NXJ5 209 aa6.55□□□□□ -1.36
VPS39-205ENST00000562258 IGLC3P0DOY3 106 aa6.55□□□□□ -1.36
VPS39-205ENST00000562258 C2orf82Q6UX34 121 aa6.55□□□□□ -1.36
VPS39-205ENST00000562258 A0A1B0GWB2 263 aa6.55□□□□□ -1.36
VPS39-205ENST00000562258 LINC00694P0DN24 101 aa6.55□□□□□ -1.36
VPS39-205ENST00000562258 DEFB105AQ8NG35 78 aa6.55□□□□□ -1.36
VPS39-205ENST00000562258 ZFHX3Q15911 3703 aa6.55□□□□□ -1.36
VPS39-205ENST00000562258 IGLV4-60A0A075B6I1 120 aa6.54□□□□□ -1.36
VPS39-205ENST00000562258 NPSP0C0P6 89 aa6.54□□□□□ -1.36
VPS39-205ENST00000562258 MIAQ16674 131 aa6.54□□□□□ -1.36
VPS39-205ENST00000562258 TSPAN13O95857 204 aa6.54□□□□□ -1.36
VPS39-205ENST00000562258 MIR7-3HGQ8N6C7 128 aa6.54□□□□□ -1.36
VPS39-205ENST00000562258 C11orf72Q8NBR9 251 aa6.54□□□□□ -1.36
VPS39-205ENST00000562258 ODF1Q14990 250 aa6.54□□□□□ -1.36
VPS39-205ENST00000562258 B9D2Q9BPU9 175 aa6.54□□□□□ -1.36
VPS39-205ENST00000562258 SND1-IT1Q9HBX3 110 aa6.54□□□□□ -1.36
VPS39-205ENST00000562258 TAL2Q16559 108 aa6.53□□□□□ -1.36
VPS39-205ENST00000562258 LYPD5Q6UWN5 251 aa6.53□□□□□ -1.36
VPS39-205ENST00000562258 POM121L12Q8N7R1 296 aa6.53□□□□□ -1.36
VPS39-205ENST00000562258 MUC7Q8TAX7 377 aa6.53□□□□□ -1.36
VPS39-205ENST00000562258 TMEM126AQ9H061 195 aa6.53□□□□□ -1.36
VPS39-205ENST00000562258 SAMD5Q5TGI4 173 aa6.53□□□□□ -1.36
VPS39-205ENST00000562258 TRBV6-5A0A0K0K1A5 114 aa6.53□□□□□ -1.36
VPS39-205ENST00000562258 TP73-AS1Q9UF72 201 aa6.53□□□□□ -1.36
VPS39-205ENST00000562258 LINC00959A0A1B0GUT2 108 aa6.52□□□□□ -1.37
VPS39-205ENST00000562258 SYCNQ0VAF6 134 aa6.52□□□□□ -1.37
VPS39-205ENST00000562258 ETDCA0A1B0GVM5 59 aa6.52□□□□□ -1.37
VPS39-205ENST00000562258 NCR3O14931 201 aa6.52□□□□□ -1.37
VPS39-205ENST00000562258 C14orf177Q52M58 125 aa6.52□□□□□ -1.37
VPS39-205ENST00000562258 A0A087WZ39 114 aa6.52□□□□□ -1.37
VPS39-205ENST00000562258 ESRGQ1W209 222 aa6.52□□□□□ -1.37
VPS39-205ENST00000562258 CNFNQ9BYD5 112 aa6.52□□□□□ -1.37
VPS39-205ENST00000562258 F8WEM9 126 aa6.51□□□□□ -1.37
VPS39-205ENST00000562258 COA6Q5JTJ3 125 aaKnown RBP6.51□□□□□ -1.37
VPS39-205ENST00000562258 Q8NAQ8 132 aa6.51□□□□□ -1.37
VPS39-205ENST00000562258 OTOGQ6ZRI0 2925 aa6.51□□□□□ -1.37
VPS39-205ENST00000562258 COX8AP10176 69 aa6.51□□□□□ -1.37
VPS39-205ENST00000562258 LINC01545Q5VT33 79 aa6.51□□□□□ -1.37
VPS39-205ENST00000562258 WWC2-AS2Q96NR7 200 aa6.51□□□□□ -1.37
VPS39-205ENST00000562258 IGHV1-58A0A0C4DH39 117 aa6.5□□□□□ -1.37
VPS39-205ENST00000562258 FAM19A5Q7Z5A7 132 aaPredicted RBP6.5□□□□□ -1.37
VPS39-205ENST00000562258 NFE4Q86UQ8 179 aa6.5□□□□□ -1.37
VPS39-205ENST00000562258 TRAV8-4A0A0B4J246 113 aa6.5□□□□□ -1.37
VPS39-205ENST00000562258 K7ERJ3 54 aa6.5□□□□□ -1.37
VPS39-205ENST00000562258 CARD19Q96LW7 228 aa6.5□□□□□ -1.37
VPS39-205ENST00000562258 HIGD2AQ9BW72 106 aa6.5□□□□□ -1.37
VPS39-205ENST00000562258 UBE2D4Q9Y2X8 147 aa6.5□□□□□ -1.37
VPS39-205ENST00000562258 A0A096LNI7 61 aa6.5□□□□□ -1.37
VPS39-205ENST00000562258 UBE2AP49459 152 aa6.5□□□□□ -1.37
VPS39-205ENST00000562258 HERV-K104P63124 156 aa6.5□□□□□ -1.37
VPS39-205ENST00000562258 CD164L2Q6UWJ8 174 aa6.5□□□□□ -1.37
VPS39-205ENST00000562258 CELSR1Q9NYQ6 3014 aa6.5□□□□□ -1.37
VPS39-205ENST00000562258 ZNF22P17026 224 aaPredicted RBP6.49□□□□□ -1.37
VPS39-205ENST00000562258 C1orf134Q5TEV5 83 aa6.49□□□□□ -1.37
VPS39-205ENST00000562258 CDC42SE2Q9NRR3 84 aa6.49□□□□□ -1.37
VPS39-205ENST00000562258 UBE2V1Q13404 147 aa6.49□□□□□ -1.37
VPS39-205ENST00000562258 PIK3CD-AS1Q5SR53 167 aa6.49□□□□□ -1.37
VPS39-205ENST00000562258 MUSTN1Q8IVN3 82 aa6.49□□□□□ -1.37
VPS39-205ENST00000562258 C19orf73Q9NVV2 129 aa6.49□□□□□ -1.37
VPS39-205ENST00000562258 TRAV12-1A0A0B4J245 112 aa6.48□□□□□ -1.37
VPS39-205ENST00000562258 MRPL52Q86TS9 123 aaKnown RBP6.48□□□□□ -1.37
VPS39-205ENST00000562258 PKD1L1Q8TDX9 2849 aa6.48□□□□□ -1.37
VPS39-205ENST00000562258 A4D1N5 150 aa6.48□□□□□ -1.37
VPS39-205ENST00000562258 Q8N3U1 123 aa6.48□□□□□ -1.37
VPS39-205ENST00000562258 KLK9Q2XQG4 91 aa6.48□□□□□ -1.37
VPS39-205ENST00000562258 GHRHP01286 108 aa6.47□□□□□ -1.37
VPS39-205ENST00000562258 COX8CQ7Z4L0 72 aa6.47□□□□□ -1.37
VPS39-205ENST00000562258 FBN1P35555 2871 aaKnown RBP6.47□□□□□ -1.37
VPS39-205ENST00000562258 IGLV4-69A0A075B6H9 119 aa6.47□□□□□ -1.37
VPS39-205ENST00000562258 TINCRA0A1B0GVN0 87 aa6.47□□□□□ -1.37
VPS39-205ENST00000562258 FOXI1Q12951 378 aa6.47□□□□□ -1.37
VPS39-205ENST00000562258 E9PLD3 99 aa6.47□□□□□ -1.37
VPS39-205ENST00000562258 H7C423 109 aa6.47□□□□□ -1.37
VPS39-205ENST00000562258 CXCL5P42830 114 aa6.47□□□□□ -1.37
VPS39-205ENST00000562258 ATXN8Q156A1 80 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms