RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 DEFB121Q5J5C9 76 aa8.88□□□□□ -0.99
SNX1-211ENST00000560829 C10orf126Q8N4M7 172 aa8.88□□□□□ -0.99
SNX1-211ENST00000560829 NOTCH1P46531 2555 aa8.88□□□□□ -0.99
SNX1-211ENST00000560829 NBEAL1Q6ZS30 2694 aa8.87□□□□□ -0.99
SNX1-211ENST00000560829 LINC00959A0A1B0GUT2 108 aa8.87□□□□□ -0.99
SNX1-211ENST00000560829 CCL25O15444 150 aa8.87□□□□□ -0.99
SNX1-211ENST00000560829 NANOS2P60321 138 aaKnown RBP8.87□□□□□ -0.99
SNX1-211ENST00000560829 LURAP1LQ8IV03 231 aa8.87□□□□□ -0.99
SNX1-211ENST00000560829 COX11Q9Y6N1 276 aa8.87□□□□□ -0.99
SNX1-211ENST00000560829 IGHV3OR16-9A0A0B4J2B5 98 aa8.87□□□□□ -0.99
SNX1-211ENST00000560829 A0A0J9YXY3 114 aa8.87□□□□□ -0.99
SNX1-211ENST00000560829 LYPD5Q6UWN5 251 aa8.87□□□□□ -0.99
SNX1-211ENST00000560829 NDUFA12Q9UI09 145 aa8.87□□□□□ -0.99
SNX1-211ENST00000560829 K7EP13 123 aa8.86□□□□□ -0.99
SNX1-211ENST00000560829 DEFB131BA0A096LNP1 70 aa8.85□□□□□ -0.99
SNX1-211ENST00000560829 NDUFA1O15239 70 aa8.85□□□□□ -0.99
SNX1-211ENST00000560829 PTTG1IPP53801 180 aa8.85□□□□□ -0.99
SNX1-211ENST00000560829 IGKV3OR2-268A0A0C4DH90 116 aa8.85□□□□□ -0.99
SNX1-211ENST00000560829 SRSF9Q13242 221 aaKnown RBP eCLIP8.85□□□□□ -0.99
SNX1-211ENST00000560829 MRAPQ8TCY5 172 aa8.85□□□□□ -0.99
SNX1-211ENST00000560829 MGAM2Q2M2H8 2515 aa8.85□□□□□ -0.99
SNX1-211ENST00000560829 A0A087WZ39 114 aa8.84□□□□□ -0.99
SNX1-211ENST00000560829 A0A1B0GWB2 263 aa8.84□□□□□ -0.99
SNX1-211ENST00000560829 TMEM238C9JI98 176 aa8.84□□□□□ -0.99
SNX1-211ENST00000560829 IGHV3-30P01768 117 aa8.84□□□□□ -0.99
SNX1-211ENST00000560829 IGHV3-30-5P0DP03 117 aa8.84□□□□□ -0.99
SNX1-211ENST00000560829 SS18Q15532 418 aa8.84□□□□□ -0.99
SNX1-211ENST00000560829 Q6ZVH6 145 aa8.84□□□□□ -0.99
SNX1-211ENST00000560829 LITAFQ99732 161 aa8.84□□□□□ -0.99
SNX1-211ENST00000560829 TENM3Q9P273 2699 aa8.83□□□□□ -1
SNX1-211ENST00000560829 TIMM17BO60830 172 aa8.83□□□□□ -1
SNX1-211ENST00000560829 SMIM13P0DJ93 91 aa8.83□□□□□ -1
SNX1-211ENST00000560829 LINC01561Q8N1V8 128 aa8.83□□□□□ -1
SNX1-211ENST00000560829 LINC00269Q8N2A0 174 aa8.83□□□□□ -1
SNX1-211ENST00000560829 DNAH9Q9NYC9 4486 aa8.82□□□□□ -1
SNX1-211ENST00000560829 TRAV10A0A0B4J240 114 aa8.82□□□□□ -1
SNX1-211ENST00000560829 TMEM238LA0A1B0GVL6 79 aa8.82□□□□□ -1
SNX1-211ENST00000560829 A6NJY4 79 aa8.82□□□□□ -1
SNX1-211ENST00000560829 ANGP03950 147 aaKnown RBP8.82□□□□□ -1
SNX1-211ENST00000560829 Q8N3U1 123 aa8.82□□□□□ -1
SNX1-211ENST00000560829 ZNF625Q96I27 306 aaPredicted RBP8.82□□□□□ -1
SNX1-211ENST00000560829 NHP2Q9NX24 153 aaKnown RBP8.82□□□□□ -1
SNX1-211ENST00000560829 REG3AQ06141 175 aa8.81□□□□□ -1
SNX1-211ENST00000560829 DNHD1Q96M86 4753 aa8.81□□□□□ -1
SNX1-211ENST00000560829 C9orf118A6NHY6 69 aa8.81□□□□□ -1
SNX1-211ENST00000560829 SPANXDQ9BXN6 97 aa8.81□□□□□ -1
SNX1-211ENST00000560829 Q9H8V8 135 aa8.81□□□□□ -1
SNX1-211ENST00000560829 PRR34Q9NV39 138 aa8.81□□□□□ -1
SNX1-211ENST00000560829 SPANXCQ9NY87 97 aa8.81□□□□□ -1
SNX1-211ENST00000560829 CLPSL2Q6UWE3 100 aa8.8□□□□□ -1
SNX1-211ENST00000560829 CD164L2Q6UWJ8 174 aa8.8□□□□□ -1
SNX1-211ENST00000560829 K7ERJ3 54 aa8.79□□□□□ -1
SNX1-211ENST00000560829 XCL1P47992 114 aa8.79□□□□□ -1
SNX1-211ENST00000560829 HERV-K104P63124 156 aa8.79□□□□□ -1
SNX1-211ENST00000560829 COX7B2Q8TF08 81 aa8.79□□□□□ -1
SNX1-211ENST00000560829 ESRGQ1W209 222 aa8.79□□□□□ -1
SNX1-211ENST00000560829 C5orf38Q86SI9 138 aa8.79□□□□□ -1
SNX1-211ENST00000560829 C15orf53Q8NAA6 179 aa8.79□□□□□ -1
SNX1-211ENST00000560829 CHCHD10Q8WYQ3 142 aaPredicted RBP8.79□□□□□ -1
SNX1-211ENST00000560829 B9D2Q9BPU9 175 aa8.79□□□□□ -1
SNX1-211ENST00000560829 MIAQ16674 131 aa8.78□□□□□ -1
SNX1-211ENST00000560829 ADAMTSL4-AS1Q5T5F5 129 aa8.78□□□□□ -1
SNX1-211ENST00000560829 RAB37Q96AX2 223 aa8.78□□□□□ -1
SNX1-211ENST00000560829 WFDC10BQ8IUB3 73 aa8.77□□□□□ -1.01
SNX1-211ENST00000560829 MUSTN1Q8IVN3 82 aa8.77□□□□□ -1.01
SNX1-211ENST00000560829 RPL24P83731 157 aaKnown RBP8.77□□□□□ -1.01
SNX1-211ENST00000560829 CIRBPQ14011 172 aaKnown RBP8.77□□□□□ -1.01
SNX1-211ENST00000560829 SFTA2Q6UW10 78 aa8.77□□□□□ -1.01
SNX1-211ENST00000560829 KLK12Q9UKR0 248 aa8.77□□□□□ -1.01
SNX1-211ENST00000560829 H3BUT2 72 aa8.76□□□□□ -1.01
SNX1-211ENST00000560829 IFITM1P13164 125 aa8.76□□□□□ -1.01
SNX1-211ENST00000560829 ENHOQ6UWT2 76 aa8.76□□□□□ -1.01
SNX1-211ENST00000560829 A4D1N5 150 aa8.75□□□□□ -1.01
SNX1-211ENST00000560829 COX7A2LO14548 114 aa8.75□□□□□ -1.01
SNX1-211ENST00000560829 FOXI1Q12951 378 aa8.75□□□□□ -1.01
SNX1-211ENST00000560829 VAMP3Q15836 100 aa8.75□□□□□ -1.01
SNX1-211ENST00000560829 Q8IZM0 81 aa8.75□□□□□ -1.01
SNX1-211ENST00000560829 IGLL5B9A064 214 aa8.74□□□□□ -1.01
SNX1-211ENST00000560829 CFC1BP0CG36 223 aa8.74□□□□□ -1.01
SNX1-211ENST00000560829 CFC1P0CG37 223 aa8.74□□□□□ -1.01
SNX1-211ENST00000560829 TOMM7Q9P0U1 55 aa8.74□□□□□ -1.01
SNX1-211ENST00000560829 IGLV10-54A0A075B6I4 117 aa8.74□□□□□ -1.01
SNX1-211ENST00000560829 TRAV8-4A0A0B4J246 113 aa8.74□□□□□ -1.01
SNX1-211ENST00000560829 A0A1W2PPM0 123 aa8.74□□□□□ -1.01
SNX1-211ENST00000560829 IGHV3-33P01772 117 aa8.74□□□□□ -1.01
SNX1-211ENST00000560829 UBE2V1Q13404 147 aa8.74□□□□□ -1.01
SNX1-211ENST00000560829 LINC01556Q5JQF7 62 aa8.74□□□□□ -1.01
SNX1-211ENST00000560829 PPDPFQ9H3Y8 114 aa8.74□□□□□ -1.01
SNX1-211ENST00000560829 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.73□□□□□ -1.01
SNX1-211ENST00000560829 A0A0B4J2C4 111 aa8.73□□□□□ -1.01
SNX1-211ENST00000560829 PRSS2P07478 247 aa8.73□□□□□ -1.01
SNX1-211ENST00000560829 APOMO95445 188 aa8.72□□□□□ -1.01
SNX1-211ENST00000560829 CRPP02741 224 aa8.72□□□□□ -1.01
SNX1-211ENST00000560829 MEIG1Q5JSS6 88 aa8.72□□□□□ -1.01
SNX1-211ENST00000560829 NAA38Q9BRA0 125 aaKnown RBP8.72□□□□□ -1.01
SNX1-211ENST00000560829 KIAA0087Q14695 138 aa8.72□□□□□ -1.01
SNX1-211ENST00000560829 C6orf226Q5I0X4 101 aa8.72□□□□□ -1.01
SNX1-211ENST00000560829 GAGE12HA6NDE8 117 aa8.71□□□□□ -1.01
SNX1-211ENST00000560829 IBA57-AS1B1ANH7 110 aa8.71□□□□□ -1.01
SNX1-211ENST00000560829 EIF4EBP3O60516 100 aaPredicted RBP8.71□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 243.8 ms