RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 CHCHD7Q9BUK0 85 aa8.2□□□□□ -1.1
CUX1-218ENST00000560541 H3BT86 120 aa8.19□□□□□ -1.1
CUX1-218ENST00000560541 IGHV3OR16-12A0A075B7B8 117 aa8.19□□□□□ -1.1
CUX1-218ENST00000560541 UBE2D4Q9Y2X8 147 aa8.19□□□□□ -1.1
CUX1-218ENST00000560541 ICOSQ9Y6W8 199 aa8.19□□□□□ -1.1
CUX1-218ENST00000560541 A0A0U1RRA0 63 aa8.18□□□□□ -1.1
CUX1-218ENST00000560541 TMEM89A2RUT3 159 aa8.18□□□□□ -1.1
CUX1-218ENST00000560541 ATP5G1P05496 136 aa8.18□□□□□ -1.1
CUX1-218ENST00000560541 VSIG2Q96IQ7 327 aa8.18□□□□□ -1.1
CUX1-218ENST00000560541 COX6CP09669 75 aa8.18□□□□□ -1.1
CUX1-218ENST00000560541 CDKN2A-AS1Q9UH64 79 aa8.18□□□□□ -1.1
CUX1-218ENST00000560541 ZNF625Q96I27 306 aaPredicted RBP8.17□□□□□ -1.1
CUX1-218ENST00000560541 XCL2Q9UBD3 114 aa8.17□□□□□ -1.1
CUX1-218ENST00000560541 RPL18AQ02543 176 aaKnown RBP8.16□□□□□ -1.1
CUX1-218ENST00000560541 C5orf38Q86SI9 138 aa8.16□□□□□ -1.1
CUX1-218ENST00000560541 SERP2Q8N6R1 65 aa8.16□□□□□ -1.1
CUX1-218ENST00000560541 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.16□□□□□ -1.1
CUX1-218ENST00000560541 TRBV30A0A0K0K1B3 111 aa8.16□□□□□ -1.1
CUX1-218ENST00000560541 FHL2Q14192 279 aa8.16□□□□□ -1.1
CUX1-218ENST00000560541 SPANXCQ9NY87 97 aa8.16□□□□□ -1.1
CUX1-218ENST00000560541 A0A096LNT2 108 aa8.16□□□□□ -1.1
CUX1-218ENST00000560541 MIAQ16674 131 aa8.16□□□□□ -1.1
CUX1-218ENST00000560541 Q6YL49 198 aa8.16□□□□□ -1.1
CUX1-218ENST00000560541 C11orf44Q8N8P7 122 aa8.16□□□□□ -1.1
CUX1-218ENST00000560541 DYNLRB2Q8TF09 96 aa8.16□□□□□ -1.1
CUX1-218ENST00000560541 MAP6D1Q9H9H5 199 aa8.16□□□□□ -1.1
CUX1-218ENST00000560541 DGAT2L7PQ6IED9 249 aa8.15□□□□□ -1.1
CUX1-218ENST00000560541 UPK3BQ9BT76 320 aa8.15□□□□□ -1.1
CUX1-218ENST00000560541 NBPF19A0A087WUL8 3843 aa8.15□□□□□ -1.11
CUX1-218ENST00000560541 IGHV3-53P01767 116 aa8.14□□□□□ -1.11
CUX1-218ENST00000560541 DSCR9P59020 149 aa8.14□□□□□ -1.11
CUX1-218ENST00000560541 COX6A2Q02221 97 aa8.14□□□□□ -1.11
CUX1-218ENST00000560541 DEFB121Q5J5C9 76 aa8.14□□□□□ -1.11
CUX1-218ENST00000560541 C11orf72Q8NBR9 251 aa8.14□□□□□ -1.11
CUX1-218ENST00000560541 ACYP1P07311 99 aa8.14□□□□□ -1.11
CUX1-218ENST00000560541 LINC00482Q8N8I6 264 aa8.14□□□□□ -1.11
CUX1-218ENST00000560541 TMEM243Q9BU79 118 aa8.14□□□□□ -1.11
CUX1-218ENST00000560541 SPANXDQ9BXN6 97 aa8.14□□□□□ -1.11
CUX1-218ENST00000560541 SETXQ7Z333 2677 aaKnown RBP8.13□□□□□ -1.11
CUX1-218ENST00000560541 LST1O00453 97 aa8.13□□□□□ -1.11
CUX1-218ENST00000560541 PRB1P04280 392 aa8.12□□□□□ -1.11
CUX1-218ENST00000560541 TRGV1A0A0A0MS02 117 aa8.12□□□□□ -1.11
CUX1-218ENST00000560541 INSP01308 110 aa8.12□□□□□ -1.11
CUX1-218ENST00000560541 IGHV4-31P0DP07 118 aa8.12□□□□□ -1.11
CUX1-218ENST00000560541 KRTAP10-9P60411 292 aa8.12□□□□□ -1.11
CUX1-218ENST00000560541 DAZ2Q13117 558 aaKnown RBP8.12□□□□□ -1.11
CUX1-218ENST00000560541 DAZ4Q86SG3 579 aaKnown RBP8.12□□□□□ -1.11
CUX1-218ENST00000560541 Q9H8V8 135 aa8.12□□□□□ -1.11
CUX1-218ENST00000560541 DAZ3Q9NR90 486 aaKnown RBP8.12□□□□□ -1.11
CUX1-218ENST00000560541 MTORP42345 2549 aa8.11□□□□□ -1.11
CUX1-218ENST00000560541 USP17L23D6RBM5 183 aa8.11□□□□□ -1.11
CUX1-218ENST00000560541 C20orf197Q8N268 126 aa8.11□□□□□ -1.11
CUX1-218ENST00000560541 TIRAPP58753 221 aa8.11□□□□□ -1.11
CUX1-218ENST00000560541 RETNQ9HD89 108 aa8.11□□□□□ -1.11
CUX1-218ENST00000560541 A8MTW9 85 aa8.1□□□□□ -1.11
CUX1-218ENST00000560541 CXCL5P42830 114 aa8.1□□□□□ -1.11
CUX1-218ENST00000560541 DEFB114Q30KQ6 69 aa8.1□□□□□ -1.11
CUX1-218ENST00000560541 LINC01600Q96MT4 127 aa8.1□□□□□ -1.11
CUX1-218ENST00000560541 LINC00474Q9P2X8 69 aa8.1□□□□□ -1.11
CUX1-218ENST00000560541 ITPR3Q14573 2671 aa8.1□□□□□ -1.11
CUX1-218ENST00000560541 CR1P17927 2039 aa8.1□□□□□ -1.11
CUX1-218ENST00000560541 HIST1H4AP62805 103 aaKnown RBP8.1□□□□□ -1.11
CUX1-218ENST00000560541 USP24Q9UPU5 2620 aa8.1□□□□□ -1.11
CUX1-218ENST00000560541 SS18Q15532 418 aa8.09□□□□□ -1.11
CUX1-218ENST00000560541 ODF3L2Q3SX64 289 aa8.09□□□□□ -1.11
CUX1-218ENST00000560541 LINC00242Q5T6M2 205 aa8.09□□□□□ -1.11
CUX1-218ENST00000560541 FSHBP01225 129 aa8.09□□□□□ -1.11
CUX1-218ENST00000560541 ACANP16112 2415 aa8.09□□□□□ -1.11
CUX1-218ENST00000560541 FLNAP21333 2647 aaKnown RBP8.08□□□□□ -1.12
CUX1-218ENST00000560541 NDUFA1O15239 70 aa8.08□□□□□ -1.12
CUX1-218ENST00000560541 BEAN1Q3B7T3 259 aa8.08□□□□□ -1.12
CUX1-218ENST00000560541 Q6ZTI0 123 aa8.08□□□□□ -1.12
CUX1-218ENST00000560541 APCP25054 2843 aa8.08□□□□□ -1.12
CUX1-218ENST00000560541 STHQ8IWL8 128 aa8.08□□□□□ -1.12
CUX1-218ENST00000560541 C4orf3Q8WVX3 66 aa8.08□□□□□ -1.12
CUX1-218ENST00000560541 FN1P02751 2386 aaKnown RBP8.08□□□□□ -1.12
CUX1-218ENST00000560541 BAALC-AS2P0C853 105 aa8.08□□□□□ -1.12
CUX1-218ENST00000560541 HILS1P60008 231 aa8.08□□□□□ -1.12
CUX1-218ENST00000560541 C1orf158Q8N1D5 194 aa8.08□□□□□ -1.12
CUX1-218ENST00000560541 LINC00308Q8TCZ7 52 aa8.08□□□□□ -1.12
CUX1-218ENST00000560541 WFDC9Q8NEX5 89 aa8.07□□□□□ -1.12
CUX1-218ENST00000560541 PIK3CD-AS1Q5SR53 167 aa8.07□□□□□ -1.12
CUX1-218ENST00000560541 SOSTDC1Q6X4U4 206 aa8.07□□□□□ -1.12
CUX1-218ENST00000560541 NTM-AS1Q6ZSK4 140 aa8.07□□□□□ -1.12
CUX1-218ENST00000560541 Q8N2B8 174 aa8.07□□□□□ -1.12
CUX1-218ENST00000560541 FP248Q71RG6 208 aaPredicted RBP8.06□□□□□ -1.12
CUX1-218ENST00000560541 PRIMA1Q86XR5 153 aa8.06□□□□□ -1.12
CUX1-218ENST00000560541 IGLV5-45A0A087WSX0 123 aa8.06□□□□□ -1.12
CUX1-218ENST00000560541 TRAV23DV6A0A075B6W5 121 aa8.06□□□□□ -1.12
CUX1-218ENST00000560541 IGKV3OR2-268A0A0C4DH90 116 aa8.06□□□□□ -1.12
CUX1-218ENST00000560541 SMIM1B2RUZ4 78 aa8.06□□□□□ -1.12
CUX1-218ENST00000560541 C16orf95Q9H693 158 aa8.05□□□□□ -1.12
CUX1-218ENST00000560541 TIMM17BO60830 172 aa8.05□□□□□ -1.12
CUX1-218ENST00000560541 GHRHP01286 108 aa8.05□□□□□ -1.12
CUX1-218ENST00000560541 RPL36AP83881 106 aaKnown RBP8.05□□□□□ -1.12
CUX1-218ENST00000560541 RPL36ALQ969Q0 106 aaKnown RBP8.05□□□□□ -1.12
CUX1-218ENST00000560541 Q96MF0 132 aa8.05□□□□□ -1.12
CUX1-218ENST00000560541 Q9HAA7 133 aa8.05□□□□□ -1.12
CUX1-218ENST00000560541 NOP10Q9NPE3 64 aaKnown RBP8.05□□□□□ -1.12
CUX1-218ENST00000560541 UBR5O95071 2799 aaPredicted RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms