RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 TRAV8-3A0A0A6YYJ7 113 aa12.43□□□□□ -0.42
SNX1-208ENST00000559844 A0A1W2PPM0 123 aa12.43□□□□□ -0.42
SNX1-208ENST00000559844 SPINK8P0C7L1 97 aa12.43□□□□□ -0.42
SNX1-208ENST00000559844 CDKN2A-AS1Q9UH64 79 aa12.43□□□□□ -0.42
SNX1-208ENST00000559844 GAGE10A6NGK3 116 aa12.42□□□□□ -0.42
SNX1-208ENST00000559844 TMEM238C9JI98 176 aa12.42□□□□□ -0.42
SNX1-208ENST00000559844 HUWE1Q7Z6Z7 4374 aaKnown RBP12.42□□□□□ -0.42
SNX1-208ENST00000559844 FABP2P12104 132 aa12.41□□□□□ -0.42
SNX1-208ENST00000559844 DAD1P61803 113 aa12.41□□□□□ -0.42
SNX1-208ENST00000559844 TRAV13-1A0A0B4J241 112 aa12.41□□□□□ -0.42
SNX1-208ENST00000559844 A0A0J9YXY3 114 aa12.41□□□□□ -0.42
SNX1-208ENST00000559844 IGHV3-30P01768 117 aa12.41□□□□□ -0.42
SNX1-208ENST00000559844 IGHV3-30-5P0DP03 117 aa12.41□□□□□ -0.42
SNX1-208ENST00000559844 GAGE6Q13070 117 aa12.41□□□□□ -0.42
SNX1-208ENST00000559844 C10orf126Q8N4M7 172 aa12.41□□□□□ -0.42
SNX1-208ENST00000559844 CHCHD5Q9BSY4 110 aa12.41□□□□□ -0.42
SNX1-208ENST00000559844 NDUFA12Q9UI09 145 aa12.41□□□□□ -0.42
SNX1-208ENST00000559844 PAX4O43316 350 aa12.4□□□□□ -0.42
SNX1-208ENST00000559844 COX6A2Q02221 97 aa12.4□□□□□ -0.42
SNX1-208ENST00000559844 ZFAND6Q6FIF0 208 aa12.4□□□□□ -0.42
SNX1-208ENST00000559844 IGLL5B9A064 214 aa12.39□□□□□ -0.43
SNX1-208ENST00000559844 K7EP34 96 aa12.39□□□□□ -0.43
SNX1-208ENST00000559844 SPART-AS1P0CW21 52 aa12.39□□□□□ -0.43
SNX1-208ENST00000559844 NAA38Q9BRA0 125 aaKnown RBP12.39□□□□□ -0.43
SNX1-208ENST00000559844 A0A0J9YWU9 116 aa12.39□□□□□ -0.43
SNX1-208ENST00000559844 ATP5G1P05496 136 aa12.38□□□□□ -0.43
SNX1-208ENST00000559844 C11orf68Q9H3H3 251 aaKnown RBP12.38□□□□□ -0.43
SNX1-208ENST00000559844 STAB2Q8WWQ8 2551 aa12.38□□□□□ -0.43
SNX1-208ENST00000559844 TGP01266 2768 aa12.38□□□□□ -0.43
SNX1-208ENST00000559844 TEX48A0A1B0GUV7 120 aa12.38□□□□□ -0.43
SNX1-208ENST00000559844 IGLV5-39A0A0G2JS06 123 aa12.37□□□□□ -0.43
SNX1-208ENST00000559844 SPCS1Q9Y6A9 102 aa12.37□□□□□ -0.43
SNX1-208ENST00000559844 NDUFA1O15239 70 aa12.36□□□□□ -0.43
SNX1-208ENST00000559844 RPL24P83731 157 aaKnown RBP12.36□□□□□ -0.43
SNX1-208ENST00000559844 CELA1Q9UNI1 258 aa12.35□□□□□ -0.43
SNX1-208ENST00000559844 SMIM1B2RUZ4 78 aa12.34□□□□□ -0.43
SNX1-208ENST00000559844 TIMM17BO60830 172 aa12.34□□□□□ -0.43
SNX1-208ENST00000559844 SPANXDQ9BXN6 97 aa12.34□□□□□ -0.43
SNX1-208ENST00000559844 SPANXCQ9NY87 97 aa12.34□□□□□ -0.43
SNX1-208ENST00000559844 IGLV4-60A0A075B6I1 120 aa12.34□□□□□ -0.43
SNX1-208ENST00000559844 TRAV26-1A0A087WT03 109 aa12.34□□□□□ -0.43
SNX1-208ENST00000559844 LITAFQ99732 161 aa12.33□□□□□ -0.44
SNX1-208ENST00000559844 A0A1B0GUV1 79 aa12.32□□□□□ -0.44
SNX1-208ENST00000559844 F5H768 121 aa12.32□□□□□ -0.44
SNX1-208ENST00000559844 APOMO95445 188 aa12.32□□□□□ -0.44
SNX1-208ENST00000559844 MUSTN1Q8IVN3 82 aa12.32□□□□□ -0.44
SNX1-208ENST00000559844 PGPEP1Q9NXJ5 209 aa12.32□□□□□ -0.44
SNX1-208ENST00000559844 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.31□□□□□ -0.44
SNX1-208ENST00000559844 A4D1N5 150 aa12.3□□□□□ -0.44
SNX1-208ENST00000559844 TMEM262E9PQX1 116 aa12.3□□□□□ -0.44
SNX1-208ENST00000559844 CFC1BP0CG36 223 aa12.3□□□□□ -0.44
SNX1-208ENST00000559844 CFC1P0CG37 223 aa12.3□□□□□ -0.44
SNX1-208ENST00000559844 CIRBPQ14011 172 aaKnown RBP12.3□□□□□ -0.44
SNX1-208ENST00000559844 SH2D6Q7Z4S9 175 aa12.3□□□□□ -0.44
SNX1-208ENST00000559844 MIAQ16674 131 aa12.3□□□□□ -0.44
SNX1-208ENST00000559844 C11orf45Q8TAV5 145 aa12.3□□□□□ -0.44
SNX1-208ENST00000559844 A0A096LPF7 62 aa12.29□□□□□ -0.44
SNX1-208ENST00000559844 A0A0B4J2C4 111 aa12.29□□□□□ -0.44
SNX1-208ENST00000559844 MRPL23Q16540 153 aaKnown RBP12.29□□□□□ -0.44
SNX1-208ENST00000559844 RBX1P62877 108 aa12.29□□□□□ -0.44
SNX1-208ENST00000559844 Q9H8V8 135 aa12.29□□□□□ -0.44
SNX1-208ENST00000559844 PRO1854Q9UHT4 67 aa12.29□□□□□ -0.44
SNX1-208ENST00000559844 IGKV3OR2-268A0A0C4DH90 116 aa12.28□□□□□ -0.44
SNX1-208ENST00000559844 IFITM1P13164 125 aa12.28□□□□□ -0.44
SNX1-208ENST00000559844 HERV-K104P63124 156 aa12.28□□□□□ -0.44
SNX1-208ENST00000559844 LINC00959A0A1B0GUT2 108 aa12.27□□□□□ -0.44
SNX1-208ENST00000559844 TSPAN13O95857 204 aa12.27□□□□□ -0.44
SNX1-208ENST00000559844 NANOS2P60321 138 aaKnown RBP12.27□□□□□ -0.44
SNX1-208ENST00000559844 LYRM7Q5U5X0 104 aa12.27□□□□□ -0.44
SNX1-208ENST00000559844 ICOSQ9Y6W8 199 aa12.27□□□□□ -0.44
SNX1-208ENST00000559844 PRSS2P07478 247 aa12.27□□□□□ -0.45
SNX1-208ENST00000559844 HTN3P15516 51 aa12.27□□□□□ -0.45
SNX1-208ENST00000559844 ADAMTSL4-AS1Q5T5F5 129 aa12.27□□□□□ -0.45
SNX1-208ENST00000559844 SS18Q15532 418 aa12.26□□□□□ -0.45
SNX1-208ENST00000559844 IGHV3OR16-9A0A0B4J2B5 98 aa12.25□□□□□ -0.45
SNX1-208ENST00000559844 ZNF625Q96I27 306 aaPredicted RBP12.25□□□□□ -0.45
SNX1-208ENST00000559844 COPS9Q8WXC6 57 aa12.25□□□□□ -0.45
SNX1-208ENST00000559844 A0A087WZ39 114 aa12.24□□□□□ -0.45
SNX1-208ENST00000559844 Q6ZTC4 211 aa12.24□□□□□ -0.45
SNX1-208ENST00000559844 COX7B2Q8TF08 81 aa12.24□□□□□ -0.45
SNX1-208ENST00000559844 LELP1Q5T871 98 aa12.22□□□□□ -0.45
SNX1-208ENST00000559844 MEIG1Q5JSS6 88 aa12.21□□□□□ -0.45
SNX1-208ENST00000559844 ERG28Q9UKR5 140 aa12.21□□□□□ -0.45
SNX1-208ENST00000559844 LOC107984156A0A0G2JMH3 177 aa12.21□□□□□ -0.46
SNX1-208ENST00000559844 H3BNG1 76 aa12.21□□□□□ -0.46
SNX1-208ENST00000559844 IGHV3-33P01772 117 aa12.21□□□□□ -0.46
SNX1-208ENST00000559844 ARL17AQ8IVW1 177 aa12.21□□□□□ -0.46
SNX1-208ENST00000559844 LINC01561Q8N1V8 128 aa12.21□□□□□ -0.46
SNX1-208ENST00000559844 SFTA2Q6UW10 78 aa12.2□□□□□ -0.46
SNX1-208ENST00000559844 EIF4EBP3O60516 100 aaPredicted RBP12.19□□□□□ -0.46
SNX1-208ENST00000559844 C5orf38Q86SI9 138 aa12.19□□□□□ -0.46
SNX1-208ENST00000559844 WWC2-AS2Q96NR7 200 aa12.19□□□□□ -0.46
SNX1-208ENST00000559844 F8W1H4 67 aa12.18□□□□□ -0.46
SNX1-208ENST00000559844 NPC2P61916 151 aa12.18□□□□□ -0.46
SNX1-208ENST00000559844 PPDPFQ9H3Y8 114 aa12.18□□□□□ -0.46
SNX1-208ENST00000559844 TOMM7Q9P0U1 55 aa12.18□□□□□ -0.46
SNX1-208ENST00000559844 TRBV20-1A0A075B6N2 111 aa12.18□□□□□ -0.46
SNX1-208ENST00000559844 H3BMG7 143 aa12.18□□□□□ -0.46
SNX1-208ENST00000559844 ANGP03950 147 aaKnown RBP12.18□□□□□ -0.46
SNX1-208ENST00000559844 LINC00308Q8TCZ7 52 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms