RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 PRORYQ9H606 182 aa5.21□□□□□ -1.58
USP3-210ENST00000559192 CCKP06307 115 aa5.21□□□□□ -1.58
USP3-210ENST00000559192 C18orf65Q6ZTR6 163 aa5.21□□□□□ -1.58
USP3-210ENST00000559192 FAM30AQ9NZY2 134 aa5.21□□□□□ -1.58
USP3-210ENST00000559192 C3orf84H3BNL1 204 aa5.2□□□□□ -1.58
USP3-210ENST00000559192 CCL24O00175 119 aa5.2□□□□□ -1.58
USP3-210ENST00000559192 WFDC13Q8IUB5 93 aa5.2□□□□□ -1.58
USP3-210ENST00000559192 WFDC10AQ9H1F0 79 aa5.2□□□□□ -1.58
USP3-210ENST00000559192 ESM1Q9NQ30 184 aa5.2□□□□□ -1.58
USP3-210ENST00000559192 GYPEP15421 78 aa5.2□□□□□ -1.58
USP3-210ENST00000559192 C16orf74Q96GX8 76 aa5.2□□□□□ -1.58
USP3-210ENST00000559192 COX6A2Q02221 97 aa5.2□□□□□ -1.58
USP3-210ENST00000559192 RANBP2P49792 3224 aaKnown RBP5.2□□□□□ -1.58
USP3-210ENST00000559192 NBASA2RRP1 2371 aa5.2□□□□□ -1.58
USP3-210ENST00000559192 DEFB121Q5J5C9 76 aa5.2□□□□□ -1.58
USP3-210ENST00000559192 C4orf26Q17RF5 130 aa5.19□□□□□ -1.58
USP3-210ENST00000559192 FAM222AQ5U5X8 452 aa5.19□□□□□ -1.58
USP3-210ENST00000559192 C1orf158Q8N1D5 194 aa5.19□□□□□ -1.58
USP3-210ENST00000559192 TRBV10-1A0A0K0K1A3 114 aa5.19□□□□□ -1.58
USP3-210ENST00000559192 FHL3Q13643 280 aa5.19□□□□□ -1.58
USP3-210ENST00000559192 C4orf3Q8WVX3 66 aa5.19□□□□□ -1.58
USP3-210ENST00000559192 TRBV7-6A0A0J9YX20 115 aa5.19□□□□□ -1.58
USP3-210ENST00000559192 PRYO14603 147 aa5.19□□□□□ -1.58
USP3-210ENST00000559192 CHCHD7Q9BUK0 85 aa5.18□□□□□ -1.58
USP3-210ENST00000559192 CELA1Q9UNI1 258 aa5.18□□□□□ -1.58
USP3-210ENST00000559192 IGLV1-40P01703 118 aa5.18□□□□□ -1.58
USP3-210ENST00000559192 RIF1Q5UIP0 2472 aaKnown RBP5.18□□□□□ -1.58
USP3-210ENST00000559192 ZFHX2Q9C0A1 2572 aaPredicted RBP5.18□□□□□ -1.58
USP3-210ENST00000559192 Q6ZSN1 163 aa5.18□□□□□ -1.58
USP3-210ENST00000559192 LOC100131303A0A0U1RQF7 123 aa5.17□□□□□ -1.58
USP3-210ENST00000559192 KIF25-AS1Q9Y6Z4 181 aa5.17□□□□□ -1.58
USP3-210ENST00000559192 TMEM89A2RUT3 159 aa5.17□□□□□ -1.58
USP3-210ENST00000559192 APOC4P55056 127 aa5.17□□□□□ -1.58
USP3-210ENST00000559192 SMIM11BQ8TCY0 68 aa5.17□□□□□ -1.58
USP3-210ENST00000559192 A0A1W2PPR1 153 aa5.17□□□□□ -1.58
USP3-210ENST00000559192 DEFB4AO15263 64 aa5.17□□□□□ -1.58
USP3-210ENST00000559192 C6orf99Q4VX62 202 aa5.17□□□□□ -1.58
USP3-210ENST00000559192 A0A096LNI7 61 aa5.16□□□□□ -1.58
USP3-210ENST00000559192 BEAN1Q3B7T3 259 aa5.16□□□□□ -1.58
USP3-210ENST00000559192 LINC00315P59091 139 aa5.16□□□□□ -1.58
USP3-210ENST00000559192 AMELXQ99217 191 aa5.16□□□□□ -1.58
USP3-210ENST00000559192 IGHV4-30-4P0DP06 118 aa5.16□□□□□ -1.58
USP3-210ENST00000559192 IGHV4-31P0DP07 118 aa5.16□□□□□ -1.58
USP3-210ENST00000559192 VCANP13611 3396 aa5.16□□□□□ -1.58
USP3-210ENST00000559192 A0A087WYN8 130 aa5.16□□□□□ -1.58
USP3-210ENST00000559192 AGRNO00468 2067 aa5.16□□□□□ -1.58
USP3-210ENST00000559192 TRBV7-7A0A0K0K1E9 115 aa5.15□□□□□ -1.58
USP3-210ENST00000559192 LINC00242Q5T6M2 205 aa5.15□□□□□ -1.58
USP3-210ENST00000559192 ESRGQ1W209 222 aa5.15□□□□□ -1.58
USP3-210ENST00000559192 HIGD2AQ9BW72 106 aa5.15□□□□□ -1.58
USP3-210ENST00000559192 DEFB114Q30KQ6 69 aa5.15□□□□□ -1.59
USP3-210ENST00000559192 Q6ZQY7 126 aa5.15□□□□□ -1.59
USP3-210ENST00000559192 COL27A1Q8IZC6 1860 aaPredicted RBP5.15□□□□□ -1.59
USP3-210ENST00000559192 AVPP01185 164 aa5.15□□□□□ -1.59
USP3-210ENST00000559192 OXLD1Q5BKU9 147 aa5.15□□□□□ -1.59
USP3-210ENST00000559192 LINC00208Q96KT6 92 aa5.14□□□□□ -1.59
USP3-210ENST00000559192 SMIM1B2RUZ4 78 aa5.14□□□□□ -1.59
USP3-210ENST00000559192 IBA57-AS1B1ANH7 110 aa5.14□□□□□ -1.59
USP3-210ENST00000559192 DNAJC9-AS1A6NH13 148 aa5.14□□□□□ -1.59
USP3-210ENST00000559192 FAM19A4Q96LR4 140 aa5.14□□□□□ -1.59
USP3-210ENST00000559192 ANKHD1Q8IWZ3 2542 aaKnown RBP5.14□□□□□ -1.59
USP3-210ENST00000559192 C4orf48Q5BLP8 95 aa5.13□□□□□ -1.59
USP3-210ENST00000559192 ZNF702PQ9H963 129 aa5.13□□□□□ -1.59
USP3-210ENST00000559192 WNK1Q9H4A3 2382 aa5.13□□□□□ -1.59
USP3-210ENST00000559192 SBSPONQ8IVN8 264 aa5.13□□□□□ -1.59
USP3-210ENST00000559192 LINC00269Q8N2A0 174 aa5.13□□□□□ -1.59
USP3-210ENST00000559192 KLK12Q9UKR0 248 aa5.13□□□□□ -1.59
USP3-210ENST00000559192 Q6YL49 198 aa5.13□□□□□ -1.59
USP3-210ENST00000559192 B9D2Q9BPU9 175 aa5.13□□□□□ -1.59
USP3-210ENST00000559192 RPS28P62857 69 aaKnown RBP5.13□□□□□ -1.59
USP3-210ENST00000559192 TRANK1O15050 2925 aa5.13□□□□□ -1.59
USP3-210ENST00000559192 Q8N3U1 123 aa5.12□□□□□ -1.59
USP3-210ENST00000559192 CDC42SE2Q9NRR3 84 aa5.12□□□□□ -1.59
USP3-210ENST00000559192 SPEGQ15772 3267 aa5.12□□□□□ -1.59
USP3-210ENST00000559192 MYO15AQ9UKN7 3530 aa5.12□□□□□ -1.59
USP3-210ENST00000559192 TMEM254Q8TBM7 123 aa5.12□□□□□ -1.59
USP3-210ENST00000559192 PIEZO2Q9H5I5 2752 aa5.12□□□□□ -1.59
USP3-210ENST00000559192 SPTBN5Q9NRC6 3674 aaKnown RBP5.12□□□□□ -1.59
USP3-210ENST00000559192 TRBV6-8A0A0A6YYG3 113 aa5.12□□□□□ -1.59
USP3-210ENST00000559192 CCL18P55774 89 aa5.12□□□□□ -1.59
USP3-210ENST00000559192 KIR2DL5BQ8NHK3 375 aa5.12□□□□□ -1.59
USP3-210ENST00000559192 Q9UF83 564 aa5.12□□□□□ -1.59
USP3-210ENST00000559192 CXCL6P80162 114 aa5.11□□□□□ -1.59
USP3-210ENST00000559192 DEFB113Q30KQ7 82 aa5.11□□□□□ -1.59
USP3-210ENST00000559192 NTM-AS1Q6ZSK4 140 aa5.11□□□□□ -1.59
USP3-210ENST00000559192 Q8N2B8 174 aa5.11□□□□□ -1.59
USP3-210ENST00000559192 USP34Q70CQ2 3546 aa5.11□□□□□ -1.59
USP3-210ENST00000559192 CRYGAP11844 174 aa5.1□□□□□ -1.59
USP3-210ENST00000559192 PRR3P79522 188 aaKnown RBP5.1□□□□□ -1.59
USP3-210ENST00000559192 CHCHD10Q8WYQ3 142 aaPredicted RBP5.1□□□□□ -1.59
USP3-210ENST00000559192 PLA2G2AP14555 144 aa5.1□□□□□ -1.59
USP3-210ENST00000559192 DEFB135Q30KP9 77 aa5.1□□□□□ -1.59
USP3-210ENST00000559192 FAM19A1Q7Z5A9 133 aa5.1□□□□□ -1.59
USP3-210ENST00000559192 LIMD2Q9BT23 127 aa5.1□□□□□ -1.59
USP3-210ENST00000559192 XAGE1AQ9HD64 81 aa5.1□□□□□ -1.59
USP3-210ENST00000559192 PLAC8L1A1L4L8 177 aa5.09□□□□□ -1.59
USP3-210ENST00000559192 REG3AQ06141 175 aa5.09□□□□□ -1.59
USP3-210ENST00000559192 A0A087WZ39 114 aa5.09□□□□□ -1.59
USP3-210ENST00000559192 LINC00959A0A1B0GUT2 108 aa5.09□□□□□ -1.59
USP3-210ENST00000559192 RPL28P46779 137 aaKnown RBP5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms