RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 ALKQ9UM73 1620 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 PDZD2O15018 2839 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 CUX1P39880 1505 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 ZFYVE16Q7Z3T8 1539 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 EHBP1L1Q8N3D4 1523 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 TET3O43151 1660 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 A0A1B0GWA3 101 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 NDUFC1O43677 76 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 MPC2O95563 127 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 PRH1P02810 166 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 MT-ATP8P03928 68 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 TMEM263Q8WUH6 116 aaKnown RBP0.35□□□□□ -2.35
VPS13C-207ENST00000558919 CNFNQ9BYD5 112 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 DPY30Q9C005 99 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 SPCS1Q9Y6A9 102 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 FOCADQ5VW36 1801 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 ABCC5O15440 1437 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 NAV3Q8IVL0 2385 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 UNC13BO14795 1591 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 SMARCA2P51531 1590 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 DIP2BQ9P265 1576 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 NSD1Q96L73 2696 aaPredicted RBP0.35□□□□□ -2.35
VPS13C-207ENST00000558919 CHD1O14646 1710 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 MUC2Q02817 5179 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 KALRNO60229 2985 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 PCNX1Q96RV3 2341 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 LRP6O75581 1613 aa0.35□□□□□ -2.35
VPS13C-207ENST00000558919 KCPQ6ZWJ8 1503 aa0.34□□□□□ -2.35
VPS13C-207ENST00000558919 CUL7Q14999 1698 aa0.34□□□□□ -2.35
VPS13C-207ENST00000558919 SPEF2Q9C093 1822 aa0.34□□□□□ -2.35
VPS13C-207ENST00000558919 GVINP1Q7Z2Y8 2422 aa0.34□□□□□ -2.35
VPS13C-207ENST00000558919 FAM223BA6NKX1 122 aa0.34□□□□□ -2.36
VPS13C-207ENST00000558919 BCE1O60756 84 aa0.34□□□□□ -2.36
VPS13C-207ENST00000558919 SAA2P0DJI9 122 aaPredicted RBP0.34□□□□□ -2.36
VPS13C-207ENST00000558919 PKIAP61925 76 aa0.34□□□□□ -2.36
VPS13C-207ENST00000558919 SPTAN1Q13813 2472 aaKnown RBP0.34□□□□□ -2.36
VPS13C-207ENST00000558919 KRTAP20-1Q3LI63 56 aa0.34□□□□□ -2.36
VPS13C-207ENST00000558919 NBEAL2Q6ZNJ1 2754 aa0.34□□□□□ -2.36
VPS13C-207ENST00000558919 SPRR4Q96PI1 79 aa0.34□□□□□ -2.36
VPS13C-207ENST00000558919 SMR3AQ99954 134 aa0.34□□□□□ -2.36
VPS13C-207ENST00000558919 VAMP8Q9BV40 100 aa0.34□□□□□ -2.36
VPS13C-207ENST00000558919 TNS1Q9HBL0 1735 aaKnown RBP0.34□□□□□ -2.36
VPS13C-207ENST00000558919 PRO0255Q9UI72 69 aa0.34□□□□□ -2.36
VPS13C-207ENST00000558919 TLN1Q9Y490 2541 aaKnown RBP0.34□□□□□ -2.36
VPS13C-207ENST00000558919 RNF17Q9BXT8 1623 aaKnown RBP0.34□□□□□ -2.36
VPS13C-207ENST00000558919 PHIPQ8WWQ0 1821 aa0.34□□□□□ -2.36
VPS13C-207ENST00000558919 MYOM1P52179 1685 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 CEP290O15078 2479 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 HERC1Q15751 4861 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 ZANQ9Y493 2812 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 ABCA3Q99758 1704 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 NWD2Q9ULI1 1742 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 A0A0C4DFX4 3053 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 FLNAP21333 2647 aaKnown RBP0.33□□□□□ -2.36
VPS13C-207ENST00000558919 A0A0G2JND7 137 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 ATOX1O00244 68 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 COL5A1-AS1Q5SY13 56 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 FDCSPQ8NFU4 85 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 PRO1933Q9H354 126 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 CACFD1Q9UGQ2 172 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 TMEM131LA2VDJ0 1609 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 MEGF8Q7Z7M0 2845 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 EPPK1P58107 5090 aaKnown RBP0.33□□□□□ -2.36
VPS13C-207ENST00000558919 NBEAL1Q6ZS30 2694 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 MRC2Q9UBG0 1479 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 RYR2Q92736 4967 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 KIF21AQ7Z4S6 1674 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 TANC1Q9C0D5 1861 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 UTP20O75691 2785 aaKnown RBP0.33□□□□□ -2.36
VPS13C-207ENST00000558919 ITPR1Q14643 2758 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 TEX15Q9BXT5 2789 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 CREBBPQ92793 2442 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 CEP250Q9BV73 2442 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 EYSQ5T1H1 3165 aa0.33□□□□□ -2.36
VPS13C-207ENST00000558919 CCNB3Q8WWL7 1395 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 MYH13Q9UKX3 1938 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 ZFYVE26Q68DK2 2539 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 FLNCQ14315 2725 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 TPRP12270 2363 aaKnown RBP0.32□□□□□ -2.36
VPS13C-207ENST00000558919 VPS8Q8N3P4 1428 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 WDFY4Q6ZS81 3184 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 EP300Q09472 2414 aaPredicted RBP0.32□□□□□ -2.36
VPS13C-207ENST00000558919 CEP295Q9C0D2 2601 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 RANBP2P49792 3224 aaKnown RBP0.32□□□□□ -2.36
VPS13C-207ENST00000558919 TRBV6-1A0A0K0K1D8 114 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 KRTAP2-3P0C7H8 128 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 PMCHL1Q16048 86 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 C10orf113Q5VZT2 155 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 KRTAP2-4Q9BYR9 128 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 KRTAP2-1Q9BYU5 128 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 TP53AIP1Q9HCN2 124 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 RALGAPBQ86X10 1494 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 TEX14Q8IWB6 1497 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 ROBO1Q9Y6N7 1651 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 ABCA4P78363 2273 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 ESPL1Q14674 2120 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 RGPD1P0DJD0 1748 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 SPHKAPQ2M3C7 1700 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 CPS1P31327 1500 aa0.32□□□□□ -2.36
VPS13C-207ENST00000558919 EFCAB6Q5THR3 1501 aa0.32□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms