RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 C12orf74Q32Q52 190 aa3.55□□□□□ -1.84
SRP54-211ENST00000556445 ZFAND6Q6FIF0 208 aa3.55□□□□□ -1.84
SRP54-211ENST00000556445 SLC25A34Q6PIV7 304 aa3.55□□□□□ -1.84
SRP54-211ENST00000556445 ZFP2Q6ZN57 461 aa3.55□□□□□ -1.84
SRP54-211ENST00000556445 GTSCR1Q86UQ5 136 aa3.55□□□□□ -1.84
SRP54-211ENST00000556445 TOMM6Q96B49 74 aa3.55□□□□□ -1.84
SRP54-211ENST00000556445 VPS25Q9BRG1 176 aa3.55□□□□□ -1.84
SRP54-211ENST00000556445 SPANXCQ9NY87 97 aa3.55□□□□□ -1.84
SRP54-211ENST00000556445 CYSLTR1Q9Y271 337 aa3.55□□□□□ -1.84
SRP54-211ENST00000556445 TEX15Q9BXT5 2789 aa3.55□□□□□ -1.84
SRP54-211ENST00000556445 MUC4Q99102 2169 aa3.55□□□□□ -1.84
SRP54-211ENST00000556445 FBN2P35556 2912 aa3.54□□□□□ -1.84
SRP54-211ENST00000556445 UNC79Q9P2D8 2635 aa3.54□□□□□ -1.84
SRP54-211ENST00000556445 TRBV27A0A0K0K1C4 114 aa3.54□□□□□ -1.84
SRP54-211ENST00000556445 SDHAF1A6NFY7 115 aa3.54□□□□□ -1.84
SRP54-211ENST00000556445 KRTAP16-1A8MUX0 517 aa3.54□□□□□ -1.84
SRP54-211ENST00000556445 FXYD7P58549 80 aa3.54□□□□□ -1.84
SRP54-211ENST00000556445 LINC00315P59091 139 aa3.54□□□□□ -1.84
SRP54-211ENST00000556445 FAM74A4Q5TZK3 123 aa3.54□□□□□ -1.84
SRP54-211ENST00000556445 TMEM263Q8WUH6 116 aaKnown RBP3.54□□□□□ -1.84
SRP54-211ENST00000556445 ORAOV1Q8WV07 137 aa3.54□□□□□ -1.84
SRP54-211ENST00000556445 PLEKHB2Q96CS7 222 aa3.54□□□□□ -1.84
SRP54-211ENST00000556445 C16orf74Q96GX8 76 aa3.54□□□□□ -1.84
SRP54-211ENST00000556445 TMEM141Q96I45 108 aa3.54□□□□□ -1.84
SRP54-211ENST00000556445 C14orf144Q96I85 54 aa3.54□□□□□ -1.84
SRP54-211ENST00000556445 SCGB3A1Q96QR1 104 aa3.54□□□□□ -1.84
SRP54-211ENST00000556445 ANAPC13Q9BS18 74 aa3.54□□□□□ -1.84
SRP54-211ENST00000556445 MRPS16Q9Y3D3 137 aaKnown RBP3.54□□□□□ -1.84
SRP54-211ENST00000556445 SMG1Q96Q15 3661 aaKnown RBP3.54□□□□□ -1.84
SRP54-211ENST00000556445 ACANP16112 2415 aa3.53□□□□□ -1.84
SRP54-211ENST00000556445 CENPEQ02224 2701 aa3.53□□□□□ -1.84
SRP54-211ENST00000556445 WNK1Q9H4A3 2382 aa3.53□□□□□ -1.84
SRP54-211ENST00000556445 NOTCH3Q9UM47 2321 aa3.53□□□□□ -1.84
SRP54-211ENST00000556445 A0A0J9YXY3 114 aa3.53□□□□□ -1.84
SRP54-211ENST00000556445 I3L3M4 83 aa3.53□□□□□ -1.84
SRP54-211ENST00000556445 M0QY20 66 aa3.53□□□□□ -1.84
SRP54-211ENST00000556445 DPM2O94777 84 aa3.53□□□□□ -1.84
SRP54-211ENST00000556445 NDUFC2O95298 119 aa3.53□□□□□ -1.84
SRP54-211ENST00000556445 IGKCP01834 107 aa3.53□□□□□ -1.84
SRP54-211ENST00000556445 HTN1P15515 57 aa3.53□□□□□ -1.84
SRP54-211ENST00000556445 PLNP26678 52 aa3.53□□□□□ -1.84
SRP54-211ENST00000556445 RPS28P62857 69 aaKnown RBP3.53□□□□□ -1.84
SRP54-211ENST00000556445 LCE3CQ5T5A8 94 aa3.53□□□□□ -1.84
SRP54-211ENST00000556445 ATOH7Q8N100 152 aa3.53□□□□□ -1.84
SRP54-211ENST00000556445 ANKRD29Q8N6D5 301 aa3.53□□□□□ -1.84
SRP54-211ENST00000556445 RPL39LQ96EH5 51 aaKnown RBP3.53□□□□□ -1.84
SRP54-211ENST00000556445 TIMM17AQ99595 171 aa3.53□□□□□ -1.84
SRP54-211ENST00000556445 TMEM126AQ9H061 195 aa3.53□□□□□ -1.84
SRP54-211ENST00000556445 FASNP49327 2511 aaKnown RBP3.52□□□□□ -1.85
SRP54-211ENST00000556445 PDZD2O15018 2839 aa3.52□□□□□ -1.85
SRP54-211ENST00000556445 TRAV4A0A0B4J268 109 aa3.52□□□□□ -1.85
SRP54-211ENST00000556445 TRBV10-1A0A0K0K1A3 114 aa3.52□□□□□ -1.85
SRP54-211ENST00000556445 A0A1B0GX51 115 aa3.52□□□□□ -1.85
SRP54-211ENST00000556445 KRTAP9-6A8MVA2 160 aa3.52□□□□□ -1.85
SRP54-211ENST00000556445 EPM2AB3EWF7 344 aa3.52□□□□□ -1.85
SRP54-211ENST00000556445 NDUFC2-KCTD14E9PQ53 114 aa3.52□□□□□ -1.85
SRP54-211ENST00000556445 F8VRH5 84 aa3.52□□□□□ -1.85
SRP54-211ENST00000556445 IGHV3-53P01767 116 aa3.52□□□□□ -1.85
SRP54-211ENST00000556445 COX8AP10176 69 aa3.52□□□□□ -1.85
SRP54-211ENST00000556445 HERVK_113P63121 156 aa3.52□□□□□ -1.85
SRP54-211ENST00000556445 RRN3P1Q2M238 152 aa3.52□□□□□ -1.85
SRP54-211ENST00000556445 CFAP126Q5VTH2 177 aa3.52□□□□□ -1.85
SRP54-211ENST00000556445 CEMP1Q6PRD7 247 aaPredicted RBP3.52□□□□□ -1.85
SRP54-211ENST00000556445 ZNF706Q9Y5V0 76 aaPredicted RBP3.52□□□□□ -1.85
SRP54-211ENST00000556445 SCGB1C2P0DMR2 95 aa3.51□□□□□ -1.85
SRP54-211ENST00000556445 AZU1P20160 251 aa3.51□□□□□ -1.85
SRP54-211ENST00000556445 EMP1P54849 157 aa3.51□□□□□ -1.85
SRP54-211ENST00000556445 KRTAP10-3P60369 221 aa3.51□□□□□ -1.85
SRP54-211ENST00000556445 COL5A1-AS1Q5SY13 56 aa3.51□□□□□ -1.85
SRP54-211ENST00000556445 WFDC9Q8NEX5 89 aa3.51□□□□□ -1.85
SRP54-211ENST00000556445 OPRPNQ99935 248 aaPredicted RBP3.51□□□□□ -1.85
SRP54-211ENST00000556445 GTSF1LQ9H1H1 148 aa3.51□□□□□ -1.85
SRP54-211ENST00000556445 CELSR2Q9HCU4 2923 aa3.5□□□□□ -1.85
SRP54-211ENST00000556445 CRYBG3Q68DQ2 2970 aa3.5□□□□□ -1.85
SRP54-211ENST00000556445 IGLV7-46A0A075B6I9 117 aa3.5□□□□□ -1.85
SRP54-211ENST00000556445 TRGV1A0A0A0MS02 117 aa3.5□□□□□ -1.85
SRP54-211ENST00000556445 A0A1B0GVY2 172 aa3.5□□□□□ -1.85
SRP54-211ENST00000556445 J3KT08 172 aa3.5□□□□□ -1.85
SRP54-211ENST00000556445 APOMO95445 188 aa3.5□□□□□ -1.85
SRP54-211ENST00000556445 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.5□□□□□ -1.85
SRP54-211ENST00000556445 C20orf203Q8NBC4 194 aa3.5□□□□□ -1.85
SRP54-211ENST00000556445 SNHG12Q9BXW3 62 aa3.5□□□□□ -1.85
SRP54-211ENST00000556445 MRPL16Q9NX20 251 aaKnown RBP3.5□□□□□ -1.85
SRP54-211ENST00000556445 MRPL35Q9NZE8 188 aaKnown RBP3.5□□□□□ -1.85
SRP54-211ENST00000556445 MTORP42345 2549 aa3.5□□□□□ -1.85
SRP54-211ENST00000556445 ZANQ9Y493 2812 aa3.49□□□□□ -1.85
SRP54-211ENST00000556445 TENM4Q6N022 2769 aa3.49□□□□□ -1.85
SRP54-211ENST00000556445 TRBV7-3A0A075B6L6 115 aa3.49□□□□□ -1.85
SRP54-211ENST00000556445 TRGV2A0A075B6R0 118 aa3.49□□□□□ -1.85
SRP54-211ENST00000556445 TRBV6-4A0A1B0GX49 114 aa3.49□□□□□ -1.85
SRP54-211ENST00000556445 IGIPA6NJ69 53 aa3.49□□□□□ -1.85
SRP54-211ENST00000556445 LINC00313P59037 77 aa3.49□□□□□ -1.85
SRP54-211ENST00000556445 SEC11AP67812 179 aa3.49□□□□□ -1.85
SRP54-211ENST00000556445 TMEM101Q96IK0 257 aa3.49□□□□□ -1.85
SRP54-211ENST00000556445 TIMM21Q9BVV7 248 aa3.49□□□□□ -1.85
SRP54-211ENST00000556445 NOP10Q9NPE3 64 aaKnown RBP3.49□□□□□ -1.85
SRP54-211ENST00000556445 HIGD1BQ9P298 99 aa3.49□□□□□ -1.85
SRP54-211ENST00000556445 HHLA3Q9XRX5 114 aa3.49□□□□□ -1.85
SRP54-211ENST00000556445 NOTCH2Q04721 2471 aa3.49□□□□□ -1.85
SRP54-211ENST00000556445 ITPR2Q14571 2701 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms