RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 MXRA5Q9NR99 2828 aa10.78□□□□□ -0.68
CUX1-215ENST00000556210 ANGP03950 147 aaKnown RBP10.78□□□□□ -0.68
CUX1-215ENST00000556210 PIK3CD-AS1Q5SR53 167 aa10.78□□□□□ -0.68
CUX1-215ENST00000556210 LINC00694P0DN24 101 aa10.78□□□□□ -0.68
CUX1-215ENST00000556210 ODF3Q96PU9 254 aa10.78□□□□□ -0.68
CUX1-215ENST00000556210 RPL32P62910 135 aaKnown RBP10.77□□□□□ -0.68
CUX1-215ENST00000556210 CCDC179H3BU77 68 aa10.77□□□□□ -0.69
CUX1-215ENST00000556210 C9orf153Q5TBE3 101 aa10.77□□□□□ -0.69
CUX1-215ENST00000556210 H3BT86 120 aa10.77□□□□□ -0.69
CUX1-215ENST00000556210 POM121L12Q8N7R1 296 aa10.77□□□□□ -0.69
CUX1-215ENST00000556210 EDA2RQ9HAV5 297 aa10.77□□□□□ -0.69
CUX1-215ENST00000556210 MIAQ16674 131 aa10.76□□□□□ -0.69
CUX1-215ENST00000556210 TRBV30A0A0K0K1B3 111 aa10.75□□□□□ -0.69
CUX1-215ENST00000556210 FAM236AA0A1B0GUQ0 79 aa10.75□□□□□ -0.69
CUX1-215ENST00000556210 FAM236BA0A1B0GV22 79 aa10.75□□□□□ -0.69
CUX1-215ENST00000556210 FHL3Q13643 280 aa10.75□□□□□ -0.69
CUX1-215ENST00000556210 UNC79Q9P2D8 2635 aa10.75□□□□□ -0.69
CUX1-215ENST00000556210 DAD1P61803 113 aa10.75□□□□□ -0.69
CUX1-215ENST00000556210 ADAMTSL4-AS1Q5T5F5 129 aa10.74□□□□□ -0.69
CUX1-215ENST00000556210 FAM19A4Q96LR4 140 aa10.74□□□□□ -0.69
CUX1-215ENST00000556210 BAALC-AS2P0C853 105 aa10.74□□□□□ -0.69
CUX1-215ENST00000556210 C1orf158Q8N1D5 194 aa10.74□□□□□ -0.69
CUX1-215ENST00000556210 UBE2D4Q9Y2X8 147 aa10.74□□□□□ -0.69
CUX1-215ENST00000556210 INAFM1C9JVW0 142 aa10.74□□□□□ -0.69
CUX1-215ENST00000556210 COX6A2Q02221 97 aa10.73□□□□□ -0.69
CUX1-215ENST00000556210 MIR7-3HGQ8N6C7 128 aa10.73□□□□□ -0.69
CUX1-215ENST00000556210 Q9HAA7 133 aa10.73□□□□□ -0.69
CUX1-215ENST00000556210 CSMD2Q7Z408 3487 aa10.73□□□□□ -0.69
CUX1-215ENST00000556210 SS18Q15532 418 aa10.72□□□□□ -0.69
CUX1-215ENST00000556210 H7C423 109 aa10.72□□□□□ -0.69
CUX1-215ENST00000556210 DNAJC30Q96LL9 226 aa10.72□□□□□ -0.69
CUX1-215ENST00000556210 CMC4P56277 68 aaPredicted RBP10.71□□□□□ -0.69
CUX1-215ENST00000556210 DAZ2Q13117 558 aaKnown RBP10.71□□□□□ -0.69
CUX1-215ENST00000556210 DAZ4Q86SG3 579 aaKnown RBP10.71□□□□□ -0.69
CUX1-215ENST00000556210 DAZ3Q9NR90 486 aaKnown RBP10.71□□□□□ -0.69
CUX1-215ENST00000556210 NOTCH1P46531 2555 aa10.71□□□□□ -0.69
CUX1-215ENST00000556210 C16orf74Q96GX8 76 aa10.71□□□□□ -0.69
CUX1-215ENST00000556210 TMEM86BQ8N661 226 aa10.7□□□□□ -0.7
CUX1-215ENST00000556210 LINC00526Q96FQ7 95 aa10.7□□□□□ -0.7
CUX1-215ENST00000556210 TINCRA0A1B0GVN0 87 aa10.7□□□□□ -0.7
CUX1-215ENST00000556210 ATP5G1P05496 136 aa10.7□□□□□ -0.7
CUX1-215ENST00000556210 SND1-IT1Q9HBX3 110 aa10.7□□□□□ -0.7
CUX1-215ENST00000556210 S100A7L2Q5SY68 101 aa10.69□□□□□ -0.7
CUX1-215ENST00000556210 CHCHD7Q9BUK0 85 aa10.69□□□□□ -0.7
CUX1-215ENST00000556210 BSNQ9UPA5 3926 aa10.69□□□□□ -0.7
CUX1-215ENST00000556210 RNF152Q8N8N0 203 aa10.69□□□□□ -0.7
CUX1-215ENST00000556210 NBEAL1Q6ZS30 2694 aa10.69□□□□□ -0.7
CUX1-215ENST00000556210 APCP25054 2843 aa10.68□□□□□ -0.7
CUX1-215ENST00000556210 INAFM2P0DMQ5 153 aa10.68□□□□□ -0.7
CUX1-215ENST00000556210 FAM222AQ5U5X8 452 aa10.68□□□□□ -0.7
CUX1-215ENST00000556210 TRAV25A0A0B4J276 109 aa10.67□□□□□ -0.7
CUX1-215ENST00000556210 LST1O00453 97 aa10.67□□□□□ -0.7
CUX1-215ENST00000556210 BRI3O95415 125 aa10.67□□□□□ -0.7
CUX1-215ENST00000556210 HIST1H4AP62805 103 aaKnown RBP10.67□□□□□ -0.7
CUX1-215ENST00000556210 LINC00242Q5T6M2 205 aa10.67□□□□□ -0.7
CUX1-215ENST00000556210 COX7B2Q8TF08 81 aa10.67□□□□□ -0.7
CUX1-215ENST00000556210 MRPS36P82909 103 aaKnown RBP10.66□□□□□ -0.7
CUX1-215ENST00000556210 LRRC75A-AS1Q8N1F1 130 aa10.66□□□□□ -0.7
CUX1-215ENST00000556210 PYGO1Q9Y3Y4 419 aa10.66□□□□□ -0.7
CUX1-215ENST00000556210 ACYP1P07311 99 aa10.65□□□□□ -0.7
CUX1-215ENST00000556210 LINC00308Q8TCZ7 52 aa10.65□□□□□ -0.7
CUX1-215ENST00000556210 SBSPONQ8IVN8 264 aa10.65□□□□□ -0.71
CUX1-215ENST00000556210 SHISA2Q6UWI4 295 aa10.64□□□□□ -0.71
CUX1-215ENST00000556210 SPANXDQ9BXN6 97 aa10.64□□□□□ -0.71
CUX1-215ENST00000556210 SPANXCQ9NY87 97 aa10.64□□□□□ -0.71
CUX1-215ENST00000556210 LINC00269Q8N2A0 174 aa10.64□□□□□ -0.71
CUX1-215ENST00000556210 IGLV4-60A0A075B6I1 120 aa10.63□□□□□ -0.71
CUX1-215ENST00000556210 TRBV10-1A0A0K0K1A3 114 aa10.63□□□□□ -0.71
CUX1-215ENST00000556210 COX7A2LO14548 114 aa10.63□□□□□ -0.71
CUX1-215ENST00000556210 DEFB121Q5J5C9 76 aa10.63□□□□□ -0.71
CUX1-215ENST00000556210 NIPBLQ6KC79 2804 aaeCLIP10.63□□□□□ -0.71
CUX1-215ENST00000556210 C11orf72Q8NBR9 251 aa10.63□□□□□ -0.71
CUX1-215ENST00000556210 TRAV13-2A0A0B4J235 113 aa10.62□□□□□ -0.71
CUX1-215ENST00000556210 LY6G6DO95868 133 aa10.62□□□□□ -0.71
CUX1-215ENST00000556210 KLK9Q2XQG4 91 aa10.62□□□□□ -0.71
CUX1-215ENST00000556210 AMELXQ99217 191 aa10.62□□□□□ -0.71
CUX1-215ENST00000556210 KLK12Q9UKR0 248 aa10.62□□□□□ -0.71
CUX1-215ENST00000556210 IGKV3D-7A0A0C4DH55 119 aa10.62□□□□□ -0.71
CUX1-215ENST00000556210 SLPIP03973 132 aa10.62□□□□□ -0.71
CUX1-215ENST00000556210 FAM110AQ9BQ89 295 aa10.62□□□□□ -0.71
CUX1-215ENST00000556210 MRAPQ8TCY5 172 aa10.62□□□□□ -0.71
CUX1-215ENST00000556210 TRBV6-8A0A0A6YYG3 113 aa10.6□□□□□ -0.71
CUX1-215ENST00000556210 LINC00643Q86TS7 51 aa10.6□□□□□ -0.71
CUX1-215ENST00000556210 LECT2O14960 151 aa10.6□□□□□ -0.71
CUX1-215ENST00000556210 NDUFA1O15239 70 aa10.6□□□□□ -0.71
CUX1-215ENST00000556210 EIF4EBP3O60516 100 aaPredicted RBP10.6□□□□□ -0.71
CUX1-215ENST00000556210 NTM-AS1Q6ZSK4 140 aa10.6□□□□□ -0.71
CUX1-215ENST00000556210 CDC42SE2Q9NRR3 84 aa10.6□□□□□ -0.71
CUX1-215ENST00000556210 A0A096LNT2 108 aa10.59□□□□□ -0.71
CUX1-215ENST00000556210 Q6Q795 121 aa10.59□□□□□ -0.71
CUX1-215ENST00000556210 LAMTOR3Q9UHA4 124 aa10.59□□□□□ -0.71
CUX1-215ENST00000556210 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.58□□□□□ -0.72
CUX1-215ENST00000556210 PRO0255Q9UI72 69 aa10.58□□□□□ -0.72
CUX1-215ENST00000556210 SMIM1B2RUZ4 78 aa10.58□□□□□ -0.72
CUX1-215ENST00000556210 OVOL2Q9BRP0 275 aa10.58□□□□□ -0.72
CUX1-215ENST00000556210 STAB1Q9NY15 2570 aa10.58□□□□□ -0.72
CUX1-215ENST00000556210 PRR3P79522 188 aaKnown RBP10.57□□□□□ -0.72
CUX1-215ENST00000556210 NCR3O14931 201 aa10.57□□□□□ -0.72
CUX1-215ENST00000556210 TMEM126AQ9H061 195 aa10.57□□□□□ -0.72
CUX1-215ENST00000556210 C14orf132Q9NPU4 83 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms