RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 TAL2Q16559 108 aa8.49□□□□□ -1.05
SHMT2-214ENST00000554604 LYPD5Q6UWN5 251 aa8.49□□□□□ -1.05
SHMT2-214ENST00000554604 ORAOV1Q8WV07 137 aa8.49□□□□□ -1.05
SHMT2-214ENST00000554604 CHAC1Q9BUX1 264 aa8.49□□□□□ -1.05
SHMT2-214ENST00000554604 TTTY13Q9BZ97 58 aa8.49□□□□□ -1.05
SHMT2-214ENST00000554604 SMAGPQ0VAQ4 97 aa8.48□□□□□ -1.05
SHMT2-214ENST00000554604 GTSF1LQ9H1H1 148 aa8.48□□□□□ -1.05
SHMT2-214ENST00000554604 PKD1P98161 4303 aa8.48□□□□□ -1.05
SHMT2-214ENST00000554604 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.47□□□□□ -1.05
SHMT2-214ENST00000554604 IGKV2-29A2NJV5 120 aaPredicted RBP8.47□□□□□ -1.05
SHMT2-214ENST00000554604 GAGE12JA6NER3 117 aa8.47□□□□□ -1.05
SHMT2-214ENST00000554604 ZNF25P17030 456 aaPredicted RBP8.47□□□□□ -1.05
SHMT2-214ENST00000554604 GAGE1Q13065 139 aa8.47□□□□□ -1.05
SHMT2-214ENST00000554604 GAGE4Q13068 117 aa8.47□□□□□ -1.05
SHMT2-214ENST00000554604 GAGE5Q13069 117 aa8.47□□□□□ -1.05
SHMT2-214ENST00000554604 GAGE13Q4V321 117 aa8.47□□□□□ -1.05
SHMT2-214ENST00000554604 TMEM170BQ5T4T1 132 aa8.47□□□□□ -1.05
SHMT2-214ENST00000554604 SH2D6Q7Z4S9 175 aa8.47□□□□□ -1.05
SHMT2-214ENST00000554604 CSDC2Q9Y534 153 aaKnown RBP8.47□□□□□ -1.05
SHMT2-214ENST00000554604 COX11Q9Y6N1 276 aa8.47□□□□□ -1.05
SHMT2-214ENST00000554604 TMEM223A0PJW6 202 aa8.46□□□□□ -1.06
SHMT2-214ENST00000554604 A6NDN8 102 aa8.46□□□□□ -1.06
SHMT2-214ENST00000554604 C16orf90A8MZG2 172 aa8.46□□□□□ -1.06
SHMT2-214ENST00000554604 LINC00694P0DN24 101 aa8.46□□□□□ -1.06
SHMT2-214ENST00000554604 ZNF22P17026 224 aaPredicted RBP8.46□□□□□ -1.06
SHMT2-214ENST00000554604 A0A0J9YXV3 536 aa8.45□□□□□ -1.06
SHMT2-214ENST00000554604 LOC100131303A0A0U1RQF7 123 aa8.45□□□□□ -1.06
SHMT2-214ENST00000554604 TINCRA0A1B0GVN0 87 aa8.45□□□□□ -1.06
SHMT2-214ENST00000554604 H7C423 109 aa8.45□□□□□ -1.06
SHMT2-214ENST00000554604 TAX1BP3O14907 124 aa8.45□□□□□ -1.06
SHMT2-214ENST00000554604 LEPROTO15243 131 aa8.45□□□□□ -1.06
SHMT2-214ENST00000554604 NTM-AS1Q6ZSK4 140 aa8.45□□□□□ -1.06
SHMT2-214ENST00000554604 Q6ZUT4 128 aa8.45□□□□□ -1.06
SHMT2-214ENST00000554604 TM2D2Q9BX73 214 aa8.45□□□□□ -1.06
SHMT2-214ENST00000554604 ZNF815PA8K554 130 aa8.44□□□□□ -1.06
SHMT2-214ENST00000554604 DGAT2L7PQ6IED9 249 aa8.44□□□□□ -1.06
SHMT2-214ENST00000554604 CEND1Q8N111 149 aa8.44□□□□□ -1.06
SHMT2-214ENST00000554604 PLEKHB2Q96CS7 222 aa8.44□□□□□ -1.06
SHMT2-214ENST00000554604 DNAH11Q96DT5 4516 aa8.43□□□□□ -1.06
SHMT2-214ENST00000554604 H3BRM9 83 aa8.43□□□□□ -1.06
SHMT2-214ENST00000554604 UBE2D1P51668 147 aa8.43□□□□□ -1.06
SHMT2-214ENST00000554604 TIRAPP58753 221 aa8.43□□□□□ -1.06
SHMT2-214ENST00000554604 FAM19A3Q7Z5A8 133 aa8.43□□□□□ -1.06
SHMT2-214ENST00000554604 WFDC10BQ8IUB3 73 aa8.43□□□□□ -1.06
SHMT2-214ENST00000554604 TMEM243Q9BU79 118 aa8.43□□□□□ -1.06
SHMT2-214ENST00000554604 KIAA1109Q2LD37 5005 aa8.43□□□□□ -1.06
SHMT2-214ENST00000554604 DYNC1H1Q14204 4646 aaKnown RBP8.42□□□□□ -1.06
SHMT2-214ENST00000554604 J3QQQ9 107 aa8.42□□□□□ -1.06
SHMT2-214ENST00000554604 K7EP13 123 aa8.42□□□□□ -1.06
SHMT2-214ENST00000554604 LGALS3P17931 250 aaKnown RBP8.42□□□□□ -1.06
SHMT2-214ENST00000554604 GCSHP23434 173 aa8.42□□□□□ -1.06
SHMT2-214ENST00000554604 LINC00469Q8N7U9 141 aa8.42□□□□□ -1.06
SHMT2-214ENST00000554604 IGLV5-45A0A087WSX0 123 aa8.41□□□□□ -1.06
SHMT2-214ENST00000554604 TSPEAR-AS2P59090 65 aa8.41□□□□□ -1.06
SHMT2-214ENST00000554604 RNASE13Q5GAN3 156 aaKnown RBP8.41□□□□□ -1.06
SHMT2-214ENST00000554604 UBE2L6O14933 153 aa8.4□□□□□ -1.06
SHMT2-214ENST00000554604 DNAH10OSP0CZ25 163 aa8.4□□□□□ -1.06
SHMT2-214ENST00000554604 FXYD2P54710 66 aa8.4□□□□□ -1.06
SHMT2-214ENST00000554604 SCGB1D4Q6XE38 83 aa8.4□□□□□ -1.06
SHMT2-214ENST00000554604 Q6ZRN7 208 aaPredicted RBP8.4□□□□□ -1.06
SHMT2-214ENST00000554604 Q6ZVH6 145 aa8.4□□□□□ -1.06
SHMT2-214ENST00000554604 C10orf126Q8N4M7 172 aa8.4□□□□□ -1.06
SHMT2-214ENST00000554604 OR5A1Q8NGJ0 315 aa8.4□□□□□ -1.06
SHMT2-214ENST00000554604 HIST1H4GQ99525 98 aa8.4□□□□□ -1.06
SHMT2-214ENST00000554604 SPANXB1Q9NS25 103 aaPredicted RBP8.4□□□□□ -1.06
SHMT2-214ENST00000554604 HERC2O95714 4834 aa8.39□□□□□ -1.07
SHMT2-214ENST00000554604 TRBV6-8A0A0A6YYG3 113 aa8.39□□□□□ -1.07
SHMT2-214ENST00000554604 IGHV1-58A0A0C4DH39 117 aa8.39□□□□□ -1.07
SHMT2-214ENST00000554604 C9orf118A6NHY6 69 aa8.39□□□□□ -1.07
SHMT2-214ENST00000554604 SMIM13P0DJ93 91 aa8.39□□□□□ -1.07
SHMT2-214ENST00000554604 AMMECR1LQ6DCA0 310 aa8.39□□□□□ -1.07
SHMT2-214ENST00000554604 ATP6V0E2Q8NHE4 81 aa8.39□□□□□ -1.07
SHMT2-214ENST00000554604 TMEM101Q96IK0 257 aa8.39□□□□□ -1.07
SHMT2-214ENST00000554604 GEMIN7Q9H840 131 aaKnown RBP8.39□□□□□ -1.07
SHMT2-214ENST00000554604 CDC42SE2Q9NRR3 84 aa8.39□□□□□ -1.07
SHMT2-214ENST00000554604 PTTG1IPP53801 180 aa8.38□□□□□ -1.07
SHMT2-214ENST00000554604 HERVK_113P63121 156 aa8.38□□□□□ -1.07
SHMT2-214ENST00000554604 IGHV3-30-3P0DP02 117 aa8.37□□□□□ -1.07
SHMT2-214ENST00000554604 KRTAP10-2P60368 255 aa8.37□□□□□ -1.07
SHMT2-214ENST00000554604 LINC00242Q5T6M2 205 aa8.37□□□□□ -1.07
SHMT2-214ENST00000554604 LELP1Q5T871 98 aa8.37□□□□□ -1.07
SHMT2-214ENST00000554604 A0A1B0GWB2 263 aa8.36□□□□□ -1.07
SHMT2-214ENST00000554604 CDK2AP2O75956 126 aa8.36□□□□□ -1.07
SHMT2-214ENST00000554604 UBE2V1Q13404 147 aa8.36□□□□□ -1.07
SHMT2-214ENST00000554604 LINC01556Q5JQF7 62 aa8.36□□□□□ -1.07
SHMT2-214ENST00000554604 TMEM238LA0A1B0GVL6 79 aa8.35□□□□□ -1.07
SHMT2-214ENST00000554604 A6NJY4 79 aa8.35□□□□□ -1.07
SHMT2-214ENST00000554604 PSCAO43653 123 aa8.35□□□□□ -1.07
SHMT2-214ENST00000554604 SRSF9Q13242 221 aaKnown RBP eCLIP8.35□□□□□ -1.07
SHMT2-214ENST00000554604 VAMP3Q15836 100 aa8.35□□□□□ -1.07
SHMT2-214ENST00000554604 NHP2Q9NX24 153 aaKnown RBP8.35□□□□□ -1.07
SHMT2-214ENST00000554604 PGPEP1Q9NXJ5 209 aa8.35□□□□□ -1.07
SHMT2-214ENST00000554604 CDKN2A-AS1Q9UH64 79 aa8.35□□□□□ -1.07
SHMT2-214ENST00000554604 IGHV3-64A0A075B6Q5 118 aa8.34□□□□□ -1.07
SHMT2-214ENST00000554604 TRAV8-3A0A0A6YYJ7 113 aa8.34□□□□□ -1.07
SHMT2-214ENST00000554604 IGHV3-30P01768 117 aa8.34□□□□□ -1.07
SHMT2-214ENST00000554604 IGHV3-33P01772 117 aa8.34□□□□□ -1.07
SHMT2-214ENST00000554604 IGHV3-30-5P0DP03 117 aa8.34□□□□□ -1.07
SHMT2-214ENST00000554604 GAGE6Q13070 117 aa8.34□□□□□ -1.07
SHMT2-214ENST00000554604 CHCHD5Q9BSY4 110 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 119.4 ms