RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 LINC00242Q5T6M2 205 aa4.21□□□□□ -1.74
VIPAS39-204ENST00000553576 ZFAND6Q6FIF0 208 aa4.21□□□□□ -1.74
VIPAS39-204ENST00000553576 GEMIN7Q9H840 131 aaKnown RBP4.21□□□□□ -1.74
VIPAS39-204ENST00000553576 NHP2Q9NX24 153 aaKnown RBP4.21□□□□□ -1.74
VIPAS39-204ENST00000553576 PRO0255Q9UI72 69 aa4.21□□□□□ -1.74
VIPAS39-204ENST00000553576 TEP1Q99973 2627 aaKnown RBP4.2□□□□□ -1.74
VIPAS39-204ENST00000553576 A0A0J9YXY3 114 aa4.2□□□□□ -1.74
VIPAS39-204ENST00000553576 LOC100131303A0A0U1RQF7 123 aa4.2□□□□□ -1.74
VIPAS39-204ENST00000553576 TMEM238C9JI98 176 aa4.2□□□□□ -1.74
VIPAS39-204ENST00000553576 K7EP34 96 aa4.2□□□□□ -1.74
VIPAS39-204ENST00000553576 FABP2P12104 132 aa4.2□□□□□ -1.74
VIPAS39-204ENST00000553576 COX6A2Q02221 97 aa4.2□□□□□ -1.74
VIPAS39-204ENST00000553576 EGFEM1PQ0D2K5 195 aa4.2□□□□□ -1.74
VIPAS39-204ENST00000553576 C10orf126Q8N4M7 172 aa4.2□□□□□ -1.74
VIPAS39-204ENST00000553576 RAB37Q96AX2 223 aa4.2□□□□□ -1.74
VIPAS39-204ENST00000553576 TMEM101Q96IK0 257 aa4.2□□□□□ -1.74
VIPAS39-204ENST00000553576 SPANXDQ9BXN6 97 aa4.2□□□□□ -1.74
VIPAS39-204ENST00000553576 PPDPFQ9H3Y8 114 aa4.2□□□□□ -1.74
VIPAS39-204ENST00000553576 SPANXCQ9NY87 97 aa4.2□□□□□ -1.74
VIPAS39-204ENST00000553576 CDKN2A-AS1Q9UH64 79 aa4.2□□□□□ -1.74
VIPAS39-204ENST00000553576 TRAV26-1A0A087WT03 109 aa4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 TRAV8-3A0A0A6YYJ7 113 aa4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 F5H768 121 aa4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 UBE2L6O14933 153 aa4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 NDUFA1O15239 70 aa4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 CFC1BP0CG36 223 aa4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 CFC1P0CG37 223 aa4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 IGHV4-30-4P0DP06 118 aa4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 IFITM1P13164 125 aa4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 RPL24P83731 157 aaKnown RBP4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 KRTAP15-1Q3LI76 137 aa4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 RNASE13Q5GAN3 156 aaKnown RBP4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 FAM222AQ5U5X8 452 aa4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 Q8NAQ8 132 aa4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 ATP6V0E2Q8NHE4 81 aa4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 LITAFQ99732 161 aa4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 NDUFA12Q9UI09 145 aa4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 TRRAPQ9Y4A5 3859 aa4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 NIPBLQ6KC79 2804 aaeCLIP4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 F8P00451 2351 aa4.19□□□□□ -1.74
VIPAS39-204ENST00000553576 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.18□□□□□ -1.74
VIPAS39-204ENST00000553576 A0A0B4J2C4 111 aa4.18□□□□□ -1.74
VIPAS39-204ENST00000553576 TEX48A0A1B0GUV7 120 aa4.18□□□□□ -1.74
VIPAS39-204ENST00000553576 SPART-AS1P0CW21 52 aa4.18□□□□□ -1.74
VIPAS39-204ENST00000553576 DEFB130BP0DP73 79 aa4.18□□□□□ -1.74
VIPAS39-204ENST00000553576 DEFB130AP0DP74 79 aa4.18□□□□□ -1.74
VIPAS39-204ENST00000553576 GYPEP15421 78 aa4.18□□□□□ -1.74
VIPAS39-204ENST00000553576 DEFB135Q30KP9 77 aa4.18□□□□□ -1.74
VIPAS39-204ENST00000553576 KRTAP24-1Q3LI83 254 aa4.18□□□□□ -1.74
VIPAS39-204ENST00000553576 SH2D6Q7Z4S9 175 aa4.18□□□□□ -1.74
VIPAS39-204ENST00000553576 LINC01561Q8N1V8 128 aa4.18□□□□□ -1.74
VIPAS39-204ENST00000553576 SPCS1Q9Y6A9 102 aa4.18□□□□□ -1.74
VIPAS39-204ENST00000553576 DNAH3Q8TD57 4116 aa4.18□□□□□ -1.74
VIPAS39-204ENST00000553576 VWFP04275 2813 aa4.17□□□□□ -1.74
VIPAS39-204ENST00000553576 IGLV4-60A0A075B6I1 120 aa4.17□□□□□ -1.74
VIPAS39-204ENST00000553576 IGHV3OR16-9A0A0B4J2B5 98 aa4.17□□□□□ -1.74
VIPAS39-204ENST00000553576 IGHV4-28A0A0C4DH34 117 aa4.17□□□□□ -1.74
VIPAS39-204ENST00000553576 SMIM1B2RUZ4 78 aa4.17□□□□□ -1.74
VIPAS39-204ENST00000553576 K7ERJ3 54 aa4.17□□□□□ -1.74
VIPAS39-204ENST00000553576 SPINK8P0C7L1 97 aa4.17□□□□□ -1.74
VIPAS39-204ENST00000553576 DAD1P61803 113 aa4.17□□□□□ -1.74
VIPAS39-204ENST00000553576 HERV-K104P63124 156 aa4.17□□□□□ -1.74
VIPAS39-204ENST00000553576 CIRBPQ14011 172 aaKnown RBP4.17□□□□□ -1.74
VIPAS39-204ENST00000553576 MUSTN1Q8IVN3 82 aa4.17□□□□□ -1.74
VIPAS39-204ENST00000553576 ZNF625Q96I27 306 aaPredicted RBP4.17□□□□□ -1.74
VIPAS39-204ENST00000553576 PRO1854Q9UHT4 67 aa4.17□□□□□ -1.74
VIPAS39-204ENST00000553576 IGHV3-64A0A075B6Q5 118 aa4.16□□□□□ -1.74
VIPAS39-204ENST00000553576 A0A087WZ39 114 aa4.16□□□□□ -1.74
VIPAS39-204ENST00000553576 TRAV13-1A0A0B4J241 112 aa4.16□□□□□ -1.74
VIPAS39-204ENST00000553576 A4D1N5 150 aa4.16□□□□□ -1.74
VIPAS39-204ENST00000553576 F8W1H4 67 aa4.16□□□□□ -1.74
VIPAS39-204ENST00000553576 H3BNG1 76 aa4.16□□□□□ -1.74
VIPAS39-204ENST00000553576 IGHV3-33P01772 117 aa4.16□□□□□ -1.74
VIPAS39-204ENST00000553576 ATP5G1P05496 136 aa4.16□□□□□ -1.74
VIPAS39-204ENST00000553576 KRTAP10-11P60412 298 aa4.16□□□□□ -1.74
VIPAS39-204ENST00000553576 GAGE6Q13070 117 aa4.16□□□□□ -1.74
VIPAS39-204ENST00000553576 MIAQ16674 131 aa4.16□□□□□ -1.74
VIPAS39-204ENST00000553576 ADAMTSL4-AS1Q5T5F5 129 aa4.16□□□□□ -1.74
VIPAS39-204ENST00000553576 NAA38Q9BRA0 125 aaKnown RBP4.16□□□□□ -1.74
VIPAS39-204ENST00000553576 CHCHD5Q9BSY4 110 aa4.16□□□□□ -1.74
VIPAS39-204ENST00000553576 ATRQ13535 2644 aa4.15□□□□□ -1.74
VIPAS39-204ENST00000553576 TENM1Q9UKZ4 2725 aa4.15□□□□□ -1.75
VIPAS39-204ENST00000553576 TRBV20-1A0A075B6N2 111 aa4.15□□□□□ -1.75
VIPAS39-204ENST00000553576 LINC00959A0A1B0GUT2 108 aa4.15□□□□□ -1.75
VIPAS39-204ENST00000553576 APOMO95445 188 aa4.15□□□□□ -1.75
VIPAS39-204ENST00000553576 TSPAN13O95857 204 aa4.15□□□□□ -1.75
VIPAS39-204ENST00000553576 MRPL23Q16540 153 aaKnown RBP4.15□□□□□ -1.75
VIPAS39-204ENST00000553576 LYRM7Q5U5X0 104 aa4.15□□□□□ -1.75
VIPAS39-204ENST00000553576 SFTA2Q6UW10 78 aa4.15□□□□□ -1.75
VIPAS39-204ENST00000553576 C3orf56Q8N813 242 aa4.15□□□□□ -1.75
VIPAS39-204ENST00000553576 COPS9Q8WXC6 57 aa4.15□□□□□ -1.75
VIPAS39-204ENST00000553576 TRBV30A0A0K0K1B3 111 aa4.14□□□□□ -1.75
VIPAS39-204ENST00000553576 RBX1P62877 108 aa4.14□□□□□ -1.75
VIPAS39-204ENST00000553576 SS18Q15532 418 aa4.14□□□□□ -1.75
VIPAS39-204ENST00000553576 LELP1Q5T871 98 aa4.14□□□□□ -1.75
VIPAS39-204ENST00000553576 PRIMA1Q86XR5 153 aa4.14□□□□□ -1.75
VIPAS39-204ENST00000553576 C11orf68Q9H3H3 251 aaKnown RBP4.14□□□□□ -1.75
VIPAS39-204ENST00000553576 Q9H8V8 135 aa4.14□□□□□ -1.75
VIPAS39-204ENST00000553576 PRO0461Q9UI25 63 aa4.14□□□□□ -1.75
VIPAS39-204ENST00000553576 ERG28Q9UKR5 140 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms