RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ENHOQ6UWT2 76 aa10.5□□□□□ -0.73
LIMS1-215ENST00000544547 A0A0U1RQV1 116 aa10.49□□□□□ -0.73
LIMS1-215ENST00000544547 LMO4P61968 165 aa10.48□□□□□ -0.73
LIMS1-215ENST00000544547 C9orf66Q5T8R8 295 aa10.48□□□□□ -0.73
LIMS1-215ENST00000544547 SPART-AS1P0CW21 52 aa10.48□□□□□ -0.73
LIMS1-215ENST00000544547 EDN2P20800 178 aa10.48□□□□□ -0.73
LIMS1-215ENST00000544547 NDUFA1O15239 70 aa10.47□□□□□ -0.73
LIMS1-215ENST00000544547 PRB2P02812 416 aaPredicted RBP10.47□□□□□ -0.73
LIMS1-215ENST00000544547 SBSPONQ8IVN8 264 aa10.47□□□□□ -0.73
LIMS1-215ENST00000544547 ADGRG4Q8IZF6 3080 aa10.47□□□□□ -0.73
LIMS1-215ENST00000544547 TMEM258P61165 79 aa10.47□□□□□ -0.73
LIMS1-215ENST00000544547 EBI3Q14213 229 aa10.47□□□□□ -0.73
LIMS1-215ENST00000544547 C16orf74Q96GX8 76 aa10.47□□□□□ -0.73
LIMS1-215ENST00000544547 Q8N6K4 173 aa10.46□□□□□ -0.73
LIMS1-215ENST00000544547 WFDC11Q8NEX6 87 aa10.46□□□□□ -0.73
LIMS1-215ENST00000544547 UBE2BP63146 152 aa10.46□□□□□ -0.74
LIMS1-215ENST00000544547 LOC400499M0QZD8 3231 aa10.46□□□□□ -0.74
LIMS1-215ENST00000544547 K7EQD1 137 aa10.46□□□□□ -0.74
LIMS1-215ENST00000544547 MRPS36P82909 103 aaKnown RBP10.46□□□□□ -0.74
LIMS1-215ENST00000544547 UPK3BQ9BT76 320 aa10.45□□□□□ -0.74
LIMS1-215ENST00000544547 FAM236DA0A1B0GTK5 79 aa10.45□□□□□ -0.74
LIMS1-215ENST00000544547 KLLNB2CW77 178 aa10.45□□□□□ -0.74
LIMS1-215ENST00000544547 FAM236CP0DP71 79 aa10.45□□□□□ -0.74
LIMS1-215ENST00000544547 CAMK2N2Q96S95 79 aa10.45□□□□□ -0.74
LIMS1-215ENST00000544547 DEFB4AO15263 64 aa10.44□□□□□ -0.74
LIMS1-215ENST00000544547 PYGO1Q9Y3Y4 419 aa10.44□□□□□ -0.74
LIMS1-215ENST00000544547 DEFB135Q30KP9 77 aa10.44□□□□□ -0.74
LIMS1-215ENST00000544547 CITED2Q99967 270 aaPredicted RBP10.44□□□□□ -0.74
LIMS1-215ENST00000544547 SNURFQ9Y675 71 aa10.43□□□□□ -0.74
LIMS1-215ENST00000544547 C10orf99Q6UWK7 81 aa10.43□□□□□ -0.74
LIMS1-215ENST00000544547 MPLKIPQ8TAP9 179 aa10.43□□□□□ -0.74
LIMS1-215ENST00000544547 TRBV7-7A0A0K0K1E9 115 aa10.43□□□□□ -0.74
LIMS1-215ENST00000544547 JMJD7-PLA2G4BH0Y9G9 81 aa10.42□□□□□ -0.74
LIMS1-215ENST00000544547 C19orf84I3L1E1 186 aa10.42□□□□□ -0.74
LIMS1-215ENST00000544547 DEFB105AQ8NG35 78 aa10.42□□□□□ -0.74
LIMS1-215ENST00000544547 UBE2D4Q9Y2X8 147 aa10.42□□□□□ -0.74
LIMS1-215ENST00000544547 A6NDX4 124 aa10.42□□□□□ -0.74
LIMS1-215ENST00000544547 C11orf71Q6IPW1 123 aa10.42□□□□□ -0.74
LIMS1-215ENST00000544547 SCXQ7RTU7 201 aa10.42□□□□□ -0.74
LIMS1-215ENST00000544547 CFAP47Q6ZTR5 3102 aa10.42□□□□□ -0.74
LIMS1-215ENST00000544547 CENPEQ02224 2701 aa10.42□□□□□ -0.74
LIMS1-215ENST00000544547 CXCL5P42830 114 aa10.41□□□□□ -0.74
LIMS1-215ENST00000544547 A0A1W2PPR1 153 aa10.41□□□□□ -0.74
LIMS1-215ENST00000544547 TMEM89A2RUT3 159 aa10.41□□□□□ -0.74
LIMS1-215ENST00000544547 C9orf85Q96MD7 179 aa10.41□□□□□ -0.74
LIMS1-215ENST00000544547 CCL18P55774 89 aa10.4□□□□□ -0.74
LIMS1-215ENST00000544547 SMIM11BQ8TCY0 68 aa10.4□□□□□ -0.74
LIMS1-215ENST00000544547 KIR2DL5BQ8NHK3 375 aa10.4□□□□□ -0.74
LIMS1-215ENST00000544547 K7EQG2 157 aa10.4□□□□□ -0.75
LIMS1-215ENST00000544547 TIMM17BO60830 172 aa10.39□□□□□ -0.75
LIMS1-215ENST00000544547 KIF25-AS1Q9Y6Z4 181 aa10.39□□□□□ -0.75
LIMS1-215ENST00000544547 DMXL2Q8TDJ6 3036 aa10.39□□□□□ -0.75
LIMS1-215ENST00000544547 ETDCA0A1B0GVM5 59 aa10.39□□□□□ -0.75
LIMS1-215ENST00000544547 KALRNO60229 2985 aa10.39□□□□□ -0.75
LIMS1-215ENST00000544547 COX6A2Q02221 97 aa10.39□□□□□ -0.75
LIMS1-215ENST00000544547 Q8N2B8 174 aa10.38□□□□□ -0.75
LIMS1-215ENST00000544547 KLK12Q9UKR0 248 aa10.38□□□□□ -0.75
LIMS1-215ENST00000544547 Q6ZTI0 123 aa10.38□□□□□ -0.75
LIMS1-215ENST00000544547 LINC00315P59091 139 aa10.37□□□□□ -0.75
LIMS1-215ENST00000544547 TMEM256-PLSCR3K7ERE1 68 aa10.37□□□□□ -0.75
LIMS1-215ENST00000544547 ACANP16112 2415 aa10.37□□□□□ -0.75
LIMS1-215ENST00000544547 LINC00846Q9NV44 126 aa10.36□□□□□ -0.75
LIMS1-215ENST00000544547 LINC00242Q5T6M2 205 aa10.36□□□□□ -0.75
LIMS1-215ENST00000544547 DCANP1Q8TF63 244 aa10.36□□□□□ -0.75
LIMS1-215ENST00000544547 A0A087WYN8 130 aa10.36□□□□□ -0.75
LIMS1-215ENST00000544547 TACC2O95359 2948 aa10.36□□□□□ -0.75
LIMS1-215ENST00000544547 C4orf26Q17RF5 130 aa10.35□□□□□ -0.75
LIMS1-215ENST00000544547 EPG5Q9HCE0 2579 aa10.35□□□□□ -0.75
LIMS1-215ENST00000544547 AKAP13Q12802 2813 aa10.35□□□□□ -0.75
LIMS1-215ENST00000544547 C4orf3Q8WVX3 66 aa10.35□□□□□ -0.75
LIMS1-215ENST00000544547 MAP6D1Q9H9H5 199 aa10.35□□□□□ -0.75
LIMS1-215ENST00000544547 ZNF292O60281 2723 aa10.35□□□□□ -0.75
LIMS1-215ENST00000544547 IGHV4-28A0A0C4DH34 117 aa10.35□□□□□ -0.75
LIMS1-215ENST00000544547 DNAJC9-AS1A6NH13 148 aa10.35□□□□□ -0.75
LIMS1-215ENST00000544547 HILS1P60008 231 aa10.35□□□□□ -0.75
LIMS1-215ENST00000544547 PRO0255Q9UI72 69 aa10.35□□□□□ -0.75
LIMS1-215ENST00000544547 AMELXQ99217 191 aa10.34□□□□□ -0.75
LIMS1-215ENST00000544547 NDUFC2O95298 119 aa10.34□□□□□ -0.75
LIMS1-215ENST00000544547 SPAG11BQ08648 103 aa10.34□□□□□ -0.75
LIMS1-215ENST00000544547 Q6JHZ5 121 aa10.33□□□□□ -0.76
LIMS1-215ENST00000544547 TRBV10-1A0A0K0K1A3 114 aa10.33□□□□□ -0.76
LIMS1-215ENST00000544547 FUSP35637 526 aaKnown RBP eCLIP10.32□□□□□ -0.76
LIMS1-215ENST00000544547 FAM19A1Q7Z5A9 133 aa10.32□□□□□ -0.76
LIMS1-215ENST00000544547 Q9UF83 564 aa10.32□□□□□ -0.76
LIMS1-215ENST00000544547 SMIM1B2RUZ4 78 aa10.32□□□□□ -0.76
LIMS1-215ENST00000544547 CHCHD7Q9BUK0 85 aa10.31□□□□□ -0.76
LIMS1-215ENST00000544547 Q6ZSN1 163 aa10.31□□□□□ -0.76
LIMS1-215ENST00000544547 FLNBO75369 2602 aaKnown RBP10.31□□□□□ -0.76
LIMS1-215ENST00000544547 EIF4EBP3O60516 100 aaPredicted RBP10.3□□□□□ -0.76
LIMS1-215ENST00000544547 C6orf99Q4VX62 202 aa10.3□□□□□ -0.76
LIMS1-215ENST00000544547 SMCR5Q8TEV8 140 aa10.3□□□□□ -0.76
LIMS1-215ENST00000544547 MUC4Q99102 2169 aa10.29□□□□□ -0.76
LIMS1-215ENST00000544547 FAM218AQ96MZ4 157 aa10.29□□□□□ -0.76
LIMS1-215ENST00000544547 FAM222AQ5U5X8 452 aa10.28□□□□□ -0.76
LIMS1-215ENST00000544547 CRYGAP11844 174 aa10.28□□□□□ -0.76
LIMS1-215ENST00000544547 PRORYQ9H606 182 aa10.28□□□□□ -0.76
LIMS1-215ENST00000544547 ASPMQ8IZT6 3477 aa10.28□□□□□ -0.76
LIMS1-215ENST00000544547 NDUFS5O43920 106 aa10.27□□□□□ -0.76
LIMS1-215ENST00000544547 PRR3P79522 188 aaKnown RBP10.27□□□□□ -0.76
LIMS1-215ENST00000544547 DEFB114Q30KQ6 69 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms