RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 PRO1854Q9UHT4 67 aa10.06□□□□□ -0.8
VPS33A-209ENST00000544349 COL6A5A8TX70 2615 aa10.05□□□□□ -0.8
VPS33A-209ENST00000544349 ADAMTSL4-AS1Q5T5F5 129 aa10.05□□□□□ -0.8
VPS33A-209ENST00000544349 MDFIQ99750 246 aa10.05□□□□□ -0.8
VPS33A-209ENST00000544349 DNHD1Q96M86 4753 aa10.05□□□□□ -0.8
VPS33A-209ENST00000544349 CDKN2A-AS1Q9UH64 79 aa10.04□□□□□ -0.8
VPS33A-209ENST00000544349 NDUFA12Q9UI09 145 aa10.04□□□□□ -0.8
VPS33A-209ENST00000544349 NTM-AS1Q6ZSK4 140 aa10.04□□□□□ -0.8
VPS33A-209ENST00000544349 CELA1Q9UNI1 258 aa10.04□□□□□ -0.8
VPS33A-209ENST00000544349 H7C2G1 150 aa10.03□□□□□ -0.8
VPS33A-209ENST00000544349 IGHV3-33P01772 117 aa10.03□□□□□ -0.8
VPS33A-209ENST00000544349 COX6A2Q02221 97 aa10.03□□□□□ -0.8
VPS33A-209ENST00000544349 SPART-AS1P0CW21 52 aa10.03□□□□□ -0.8
VPS33A-209ENST00000544349 DAD1P61803 113 aa10.03□□□□□ -0.8
VPS33A-209ENST00000544349 GTSF1LQ9H1H1 148 aa10.03□□□□□ -0.8
VPS33A-209ENST00000544349 A0A0B4J2C4 111 aa10.02□□□□□ -0.81
VPS33A-209ENST00000544349 NPC2P61916 151 aa10.02□□□□□ -0.81
VPS33A-209ENST00000544349 GEMIN7Q9H840 131 aaKnown RBP10.02□□□□□ -0.81
VPS33A-209ENST00000544349 PRO0255Q9UI72 69 aa10.02□□□□□ -0.81
VPS33A-209ENST00000544349 IGLV5-45A0A087WSX0 123 aa10.01□□□□□ -0.81
VPS33A-209ENST00000544349 RETNQ9HD89 108 aa10.01□□□□□ -0.81
VPS33A-209ENST00000544349 NBEAL2Q6ZNJ1 2754 aa10.01□□□□□ -0.81
VPS33A-209ENST00000544349 ZFAND6Q6FIF0 208 aa10.01□□□□□ -0.81
VPS33A-209ENST00000544349 SBSPONQ8IVN8 264 aa10.01□□□□□ -0.81
VPS33A-209ENST00000544349 DGAT2L7PQ6IED9 249 aa10□□□□□ -0.81
VPS33A-209ENST00000544349 GYPEP15421 78 aa10□□□□□ -0.81
VPS33A-209ENST00000544349 LINC00242Q5T6M2 205 aa10□□□□□ -0.81
VPS33A-209ENST00000544349 LYRM7Q5U5X0 104 aa10□□□□□ -0.81
VPS33A-209ENST00000544349 TMEM101Q96IK0 257 aa10□□□□□ -0.81
VPS33A-209ENST00000544349 ATP5G1P05496 136 aa9.99□□□□□ -0.81
VPS33A-209ENST00000544349 MIAQ16674 131 aa9.99□□□□□ -0.81
VPS33A-209ENST00000544349 DAND5Q8N907 189 aa9.99□□□□□ -0.81
VPS33A-209ENST00000544349 SPANXDQ9BXN6 97 aa9.99□□□□□ -0.81
VPS33A-209ENST00000544349 SPANXCQ9NY87 97 aa9.99□□□□□ -0.81
VPS33A-209ENST00000544349 FBN3Q75N90 2809 aa9.99□□□□□ -0.81
VPS33A-209ENST00000544349 PKD1L1Q8TDX9 2849 aa9.99□□□□□ -0.81
VPS33A-209ENST00000544349 TIRAPP58753 221 aa9.98□□□□□ -0.81
VPS33A-209ENST00000544349 PAX4O43316 350 aa9.98□□□□□ -0.81
VPS33A-209ENST00000544349 PRSS2P07478 247 aa9.98□□□□□ -0.81
VPS33A-209ENST00000544349 SCGB1C2P0DMR2 95 aa9.98□□□□□ -0.81
VPS33A-209ENST00000544349 ERG28Q9UKR5 140 aa9.98□□□□□ -0.81
VPS33A-209ENST00000544349 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.97□□□□□ -0.81
VPS33A-209ENST00000544349 PRB2P02812 416 aaPredicted RBP9.97□□□□□ -0.81
VPS33A-209ENST00000544349 TMEM243Q9BU79 118 aa9.97□□□□□ -0.81
VPS33A-209ENST00000544349 DNAH3Q8TD57 4116 aa9.97□□□□□ -0.81
VPS33A-209ENST00000544349 TRBV20-1A0A075B6N2 111 aa9.97□□□□□ -0.81
VPS33A-209ENST00000544349 TRAV13-1A0A0B4J241 112 aa9.97□□□□□ -0.81
VPS33A-209ENST00000544349 FOXI1Q12951 378 aa9.97□□□□□ -0.81
VPS33A-209ENST00000544349 Q1RN00 199 aa9.97□□□□□ -0.81
VPS33A-209ENST00000544349 ATP6V0E2Q8NHE4 81 aa9.97□□□□□ -0.81
VPS33A-209ENST00000544349 CSDC2Q9Y534 153 aaKnown RBP9.97□□□□□ -0.81
VPS33A-209ENST00000544349 TRBV6-8A0A0A6YYG3 113 aa9.96□□□□□ -0.82
VPS33A-209ENST00000544349 IGLV5-39A0A0G2JS06 123 aa9.96□□□□□ -0.82
VPS33A-209ENST00000544349 NDUFA1O15239 70 aa9.96□□□□□ -0.82
VPS33A-209ENST00000544349 KPRPQ5T749 579 aaPredicted RBP9.96□□□□□ -0.82
VPS33A-209ENST00000544349 GAGE12HA6NDE8 117 aa9.95□□□□□ -0.82
VPS33A-209ENST00000544349 SMIM1B2RUZ4 78 aa9.95□□□□□ -0.82
VPS33A-209ENST00000544349 F5H768 121 aa9.95□□□□□ -0.82
VPS33A-209ENST00000544349 H7C423 109 aa9.95□□□□□ -0.82
VPS33A-209ENST00000544349 J3QR89 54 aa9.95□□□□□ -0.82
VPS33A-209ENST00000544349 K7EIL1 84 aa9.95□□□□□ -0.82
VPS33A-209ENST00000544349 CARD19Q96LW7 228 aa9.95□□□□□ -0.82
VPS33A-209ENST00000544349 SPATA25Q9BR10 227 aa9.95□□□□□ -0.82
VPS33A-209ENST00000544349 UBE2L6O14933 153 aa9.95□□□□□ -0.82
VPS33A-209ENST00000544349 TRIAP1O43715 76 aa9.95□□□□□ -0.82
VPS33A-209ENST00000544349 HERVK_113P63121 156 aa9.95□□□□□ -0.82
VPS33A-209ENST00000544349 SMAGPQ0VAQ4 97 aa9.95□□□□□ -0.82
VPS33A-209ENST00000544349 C11orf68Q9H3H3 251 aaKnown RBP9.95□□□□□ -0.82
VPS33A-209ENST00000544349 CDC42SE2Q9NRR3 84 aa9.95□□□□□ -0.82
VPS33A-209ENST00000544349 ANK2Q01484 3957 aa9.95□□□□□ -0.82
VPS33A-209ENST00000544349 FAM19A3Q7Z5A8 133 aa9.94□□□□□ -0.82
VPS33A-209ENST00000544349 Q9H8V8 135 aa9.94□□□□□ -0.82
VPS33A-209ENST00000544349 TRAV26-1A0A087WT03 109 aa9.94□□□□□ -0.82
VPS33A-209ENST00000544349 TEN1Q86WV5 123 aa9.94□□□□□ -0.82
VPS33A-209ENST00000544349 ANKRD29Q8N6D5 301 aa9.94□□□□□ -0.82
VPS33A-209ENST00000544349 ZNF625Q96I27 306 aaPredicted RBP9.94□□□□□ -0.82
VPS33A-209ENST00000544349 C9JAW5 83 aa9.93□□□□□ -0.82
VPS33A-209ENST00000544349 HTN3P15516 51 aa9.93□□□□□ -0.82
VPS33A-209ENST00000544349 TIMM17BO60830 172 aa9.92□□□□□ -0.82
VPS33A-209ENST00000544349 A0A096LPF7 62 aa9.92□□□□□ -0.82
VPS33A-209ENST00000544349 A0A0U1RRA0 63 aa9.92□□□□□ -0.82
VPS33A-209ENST00000544349 GAGE6Q13070 117 aa9.92□□□□□ -0.82
VPS33A-209ENST00000544349 SLC25A20O43772 301 aa9.91□□□□□ -0.82
VPS33A-209ENST00000544349 DEFB121Q5J5C9 76 aa9.91□□□□□ -0.82
VPS33A-209ENST00000544349 CHCHD5Q9BSY4 110 aa9.91□□□□□ -0.82
VPS33A-209ENST00000544349 ICOSQ9Y6W8 199 aa9.91□□□□□ -0.82
VPS33A-209ENST00000544349 A0A0J9YWU9 116 aa9.91□□□□□ -0.82
VPS33A-209ENST00000544349 TRBV30A0A0K0K1B3 111 aa9.91□□□□□ -0.82
VPS33A-209ENST00000544349 PPDPFLQ8WWR9 84 aa9.9□□□□□ -0.82
VPS33A-209ENST00000544349 RPL13AP40429 203 aaKnown RBP9.89□□□□□ -0.83
VPS33A-209ENST00000544349 MRPL23Q16540 153 aaKnown RBP9.89□□□□□ -0.83
VPS33A-209ENST00000544349 SOSTDC1Q6X4U4 206 aa9.89□□□□□ -0.83
VPS33A-209ENST00000544349 SIGMAR1Q99720 223 aa9.89□□□□□ -0.83
VPS33A-209ENST00000544349 CDIP1Q9H305 208 aa9.89□□□□□ -0.83
VPS33A-209ENST00000544349 LINC01620Q4KN68 170 aa9.89□□□□□ -0.83
VPS33A-209ENST00000544349 LINC00308Q8TCZ7 52 aa9.89□□□□□ -0.83
VPS33A-209ENST00000544349 TM2D3Q9BRN9 247 aa9.89□□□□□ -0.83
VPS33A-209ENST00000544349 ATXN8Q156A1 80 aa9.88□□□□□ -0.83
VPS33A-209ENST00000544349 IGLV4-60A0A075B6I1 120 aa9.88□□□□□ -0.83
VPS33A-209ENST00000544349 Q6ZTC4 211 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms