RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 KLK12Q9UKR0 248 aa8.68□□□□□ -1.02
CCDC42-202ENST00000539522 C1orf134Q5TEV5 83 aa8.67□□□□□ -1.02
CCDC42-202ENST00000539522 KRTAP26-1Q6PEX3 210 aa8.67□□□□□ -1.02
CCDC42-202ENST00000539522 Q6ZUT4 128 aa8.67□□□□□ -1.02
CCDC42-202ENST00000539522 MAPKAPK5-AS1Q8N8E1 139 aa8.67□□□□□ -1.02
CCDC42-202ENST00000539522 PRR34Q9NV39 138 aa8.67□□□□□ -1.02
CCDC42-202ENST00000539522 TNP2Q05952 138 aa8.66□□□□□ -1.02
CCDC42-202ENST00000539522 A0A1B0GVY2 172 aa8.65□□□□□ -1.02
CCDC42-202ENST00000539522 ANGP03950 147 aaKnown RBP8.65□□□□□ -1.02
CCDC42-202ENST00000539522 IGLC3P0DOY3 106 aa8.65□□□□□ -1.02
CCDC42-202ENST00000539522 SEC11AP67812 179 aa8.65□□□□□ -1.02
CCDC42-202ENST00000539522 RNASE13Q5GAN3 156 aaKnown RBP8.65□□□□□ -1.02
CCDC42-202ENST00000539522 NFE4Q86UQ8 179 aa8.65□□□□□ -1.02
CCDC42-202ENST00000539522 IGLV4-69A0A075B6H9 119 aa8.64□□□□□ -1.03
CCDC42-202ENST00000539522 TINCRA0A1B0GVN0 87 aa8.64□□□□□ -1.03
CCDC42-202ENST00000539522 UBE2D1P51668 147 aa8.64□□□□□ -1.03
CCDC42-202ENST00000539522 CLPSL2Q6UWE3 100 aa8.64□□□□□ -1.03
CCDC42-202ENST00000539522 FAM19A3Q7Z5A8 133 aa8.64□□□□□ -1.03
CCDC42-202ENST00000539522 LINC00269Q8N2A0 174 aa8.64□□□□□ -1.03
CCDC42-202ENST00000539522 Q9HAA7 133 aa8.64□□□□□ -1.03
CCDC42-202ENST00000539522 A0A0J9YXV3 536 aa8.63□□□□□ -1.03
CCDC42-202ENST00000539522 hDV102S1A0JD36 115 aa8.63□□□□□ -1.03
CCDC42-202ENST00000539522 CCL25O15444 150 aa8.63□□□□□ -1.03
CCDC42-202ENST00000539522 WFDC2Q14508 124 aa8.63□□□□□ -1.03
CCDC42-202ENST00000539522 MAJINQ3KP22 176 aa8.63□□□□□ -1.03
CCDC42-202ENST00000539522 SPATA45Q537H7 98 aa8.63□□□□□ -1.03
CCDC42-202ENST00000539522 STPG4Q8N801 248 aa8.63□□□□□ -1.03
CCDC42-202ENST00000539522 UBE2WQ96B02 151 aa8.63□□□□□ -1.03
CCDC42-202ENST00000539522 PAM16Q9Y3D7 125 aa8.63□□□□□ -1.03
CCDC42-202ENST00000539522 LRCOL1A6NCL2 159 aa8.62□□□□□ -1.03
CCDC42-202ENST00000539522 C11orf86A6NJI1 115 aa8.62□□□□□ -1.03
CCDC42-202ENST00000539522 CRPP02741 224 aa8.62□□□□□ -1.03
CCDC42-202ENST00000539522 REG3AQ06141 175 aa8.62□□□□□ -1.03
CCDC42-202ENST00000539522 GEMIN7Q9H840 131 aaKnown RBP8.62□□□□□ -1.03
CCDC42-202ENST00000539522 LRP1BQ9NZR2 4599 aa8.61□□□□□ -1.03
CCDC42-202ENST00000539522 TRAV8-3A0A0A6YYJ7 113 aa8.61□□□□□ -1.03
CCDC42-202ENST00000539522 TRAV13-1A0A0B4J241 112 aa8.61□□□□□ -1.03
CCDC42-202ENST00000539522 HERVK_113P63121 156 aa8.61□□□□□ -1.03
CCDC42-202ENST00000539522 LINC00959A0A1B0GUT2 108 aa8.6□□□□□ -1.03
CCDC42-202ENST00000539522 HERVK_113P61574 105 aa8.6□□□□□ -1.03
CCDC42-202ENST00000539522 SS18Q15532 418 aa8.6□□□□□ -1.03
CCDC42-202ENST00000539522 MIAQ16674 131 aa8.6□□□□□ -1.03
CCDC42-202ENST00000539522 TMEM170BQ5T4T1 132 aa8.6□□□□□ -1.03
CCDC42-202ENST00000539522 LINC00242Q5T6M2 205 aa8.6□□□□□ -1.03
CCDC42-202ENST00000539522 CHAC1Q9BUX1 264 aa8.6□□□□□ -1.03
CCDC42-202ENST00000539522 DNAH8Q96JB1 4490 aa8.6□□□□□ -1.03
CCDC42-202ENST00000539522 BIRC6Q9NR09 4857 aa8.59□□□□□ -1.03
CCDC42-202ENST00000539522 TSTD3H0UI37 97 aa8.59□□□□□ -1.03
CCDC42-202ENST00000539522 H3BRM9 83 aa8.59□□□□□ -1.03
CCDC42-202ENST00000539522 IGLV10-54A0A075B6I4 117 aa8.58□□□□□ -1.04
CCDC42-202ENST00000539522 IGLV5-45A0A087WSX0 123 aa8.58□□□□□ -1.04
CCDC42-202ENST00000539522 TRAV8-4A0A0B4J246 113 aa8.58□□□□□ -1.04
CCDC42-202ENST00000539522 IGKV3OR2-268A0A0C4DH90 116 aa8.58□□□□□ -1.04
CCDC42-202ENST00000539522 ZNF22P17026 224 aaPredicted RBP8.58□□□□□ -1.04
CCDC42-202ENST00000539522 COX6A2Q02221 97 aa8.58□□□□□ -1.04
CCDC42-202ENST00000539522 ANKRD39Q53RE8 183 aa8.58□□□□□ -1.04
CCDC42-202ENST00000539522 LINC00336Q6ZUF6 198 aa8.58□□□□□ -1.04
CCDC42-202ENST00000539522 RMI2Q96E14 147 aa8.58□□□□□ -1.04
CCDC42-202ENST00000539522 PRO1933Q9H354 126 aa8.58□□□□□ -1.04
CCDC42-202ENST00000539522 A0A087WTM6 91 aa8.57□□□□□ -1.04
CCDC42-202ENST00000539522 TMEM223A0PJW6 202 aa8.57□□□□□ -1.04
CCDC42-202ENST00000539522 E9PLD3 99 aa8.57□□□□□ -1.04
CCDC42-202ENST00000539522 FUSP35637 526 aaKnown RBP eCLIP8.57□□□□□ -1.04
CCDC42-202ENST00000539522 LINC00469Q8N7U9 141 aa8.57□□□□□ -1.04
CCDC42-202ENST00000539522 IGKV2D-24A0A075B6R9 120 aa8.56□□□□□ -1.04
CCDC42-202ENST00000539522 KRTAP10-2P60368 255 aa8.56□□□□□ -1.04
CCDC42-202ENST00000539522 C14orf144Q96I85 54 aa8.56□□□□□ -1.04
CCDC42-202ENST00000539522 MIEN1Q9BRT3 115 aa8.56□□□□□ -1.04
CCDC42-202ENST00000539522 C1orf43Q9BWL3 253 aa8.56□□□□□ -1.04
CCDC42-202ENST00000539522 CDKN2A-AS1Q9UH64 79 aa8.56□□□□□ -1.04
CCDC42-202ENST00000539522 COX11Q9Y6N1 276 aa8.56□□□□□ -1.04
CCDC42-202ENST00000539522 APOBP04114 4563 aaKnown RBP8.56□□□□□ -1.04
CCDC42-202ENST00000539522 COX8AP10176 69 aa8.55□□□□□ -1.04
CCDC42-202ENST00000539522 TM2D2Q9BX73 214 aa8.55□□□□□ -1.04
CCDC42-202ENST00000539522 UQCR10Q9UDW1 63 aa8.55□□□□□ -1.04
CCDC42-202ENST00000539522 IGKV2D-26A0A0A0MRZ7 120 aa8.54□□□□□ -1.04
CCDC42-202ENST00000539522 IGHV3OR16-9A0A0B4J2B5 98 aa8.54□□□□□ -1.04
CCDC42-202ENST00000539522 LECT2O14960 151 aa8.54□□□□□ -1.04
CCDC42-202ENST00000539522 LEPROTO15243 131 aa8.54□□□□□ -1.04
CCDC42-202ENST00000539522 DLEU1O43261 78 aa8.54□□□□□ -1.04
CCDC42-202ENST00000539522 NMUP48645 174 aa8.54□□□□□ -1.04
CCDC42-202ENST00000539522 FOXI1Q12951 378 aa8.54□□□□□ -1.04
CCDC42-202ENST00000539522 SLC25A34Q6PIV7 304 aa8.54□□□□□ -1.04
CCDC42-202ENST00000539522 CD164L2Q6UWJ8 174 aa8.54□□□□□ -1.04
CCDC42-202ENST00000539522 LINC01561Q8N1V8 128 aa8.54□□□□□ -1.04
CCDC42-202ENST00000539522 CHCHD10Q8WYQ3 142 aaPredicted RBP8.54□□□□□ -1.04
CCDC42-202ENST00000539522 PLEKHB2Q96CS7 222 aa8.54□□□□□ -1.04
CCDC42-202ENST00000539522 IGHV1-58A0A0C4DH39 117 aa8.53□□□□□ -1.04
CCDC42-202ENST00000539522 BOD1L2Q8IYS8 172 aa8.53□□□□□ -1.04
CCDC42-202ENST00000539522 A0A087WZ39 114 aa8.52□□□□□ -1.05
CCDC42-202ENST00000539522 GAGE12HA6NDE8 117 aa8.52□□□□□ -1.05
CCDC42-202ENST00000539522 PCP4L1A6NKN8 68 aa8.52□□□□□ -1.05
CCDC42-202ENST00000539522 PSCAO43653 123 aa8.52□□□□□ -1.05
CCDC42-202ENST00000539522 XCL1P47992 114 aa8.52□□□□□ -1.05
CCDC42-202ENST00000539522 NTN5Q8WTR8 489 aaPredicted RBP8.52□□□□□ -1.05
CCDC42-202ENST00000539522 J3QQQ9 107 aa8.51□□□□□ -1.05
CCDC42-202ENST00000539522 SPINK8P0C7L1 97 aa8.51□□□□□ -1.05
CCDC42-202ENST00000539522 LGALS3P17931 250 aaKnown RBP8.51□□□□□ -1.05
CCDC42-202ENST00000539522 PCP2Q8IVA1 136 aa8.51□□□□□ -1.05
CCDC42-202ENST00000539522 Q8N814 137 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms