RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 CDC42SE2Q9NRR3 84 aa8.21□□□□□ -1.1
SYNE1-234ENST00000536990 PRIMA1Q86XR5 153 aa8.21□□□□□ -1.1
SYNE1-234ENST00000536990 CCDC179H3BU77 68 aa8.2□□□□□ -1.1
SYNE1-234ENST00000536990 COPS9Q8WXC6 57 aa8.2□□□□□ -1.1
SYNE1-234ENST00000536990 SS18L2Q9UHA2 77 aa8.2□□□□□ -1.1
SYNE1-234ENST00000536990 GAGE12JA6NER3 117 aa8.2□□□□□ -1.1
SYNE1-234ENST00000536990 GAGE7O76087 117 aa8.2□□□□□ -1.1
SYNE1-234ENST00000536990 GAGE12FP0CL80 117 aa8.2□□□□□ -1.1
SYNE1-234ENST00000536990 GAGE12GP0CL81 117 aa8.2□□□□□ -1.1
SYNE1-234ENST00000536990 GAGE12IP0CL82 117 aa8.2□□□□□ -1.1
SYNE1-234ENST00000536990 GAGE4Q13068 117 aa8.2□□□□□ -1.1
SYNE1-234ENST00000536990 MEIG1Q5JSS6 88 aa8.19□□□□□ -1.1
SYNE1-234ENST00000536990 SVIPQ8NHG7 77 aa8.19□□□□□ -1.1
SYNE1-234ENST00000536990 FLNAP21333 2647 aaKnown RBP8.19□□□□□ -1.1
SYNE1-234ENST00000536990 PPDPFQ9H3Y8 114 aa8.19□□□□□ -1.1
SYNE1-234ENST00000536990 TRBV7-7A0A0K0K1E9 115 aa8.19□□□□□ -1.1
SYNE1-234ENST00000536990 CMC4P56277 68 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-234ENST00000536990 HERV-K104P63124 156 aa8.19□□□□□ -1.1
SYNE1-234ENST00000536990 LINC01006Q8NI28 216 aa8.19□□□□□ -1.1
SYNE1-234ENST00000536990 NOP10Q9NPE3 64 aaKnown RBP8.19□□□□□ -1.1
SYNE1-234ENST00000536990 SETD2Q9BYW2 2564 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-234ENST00000536990 TRACP01848 142 aa8.18□□□□□ -1.1
SYNE1-234ENST00000536990 HIST2H2BCQ6DN03 193 aa8.17□□□□□ -1.1
SYNE1-234ENST00000536990 C22orf24Q9Y442 160 aa8.17□□□□□ -1.1
SYNE1-234ENST00000536990 C2CD3Q4AC94 2353 aa8.17□□□□□ -1.1
SYNE1-234ENST00000536990 FAM218AQ96MZ4 157 aa8.17□□□□□ -1.1
SYNE1-234ENST00000536990 NBPF19A0A087WUL8 3843 aa8.17□□□□□ -1.1
SYNE1-234ENST00000536990 ACYP1P07311 99 aa8.16□□□□□ -1.1
SYNE1-234ENST00000536990 GIG44P09565 113 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-234ENST00000536990 TMEM243Q9BU79 118 aa8.16□□□□□ -1.1
SYNE1-234ENST00000536990 RPL35AP18077 110 aaKnown RBP8.16□□□□□ -1.1
SYNE1-234ENST00000536990 WFDC10AQ9H1F0 79 aa8.16□□□□□ -1.1
SYNE1-234ENST00000536990 C16orf95Q9H693 158 aa8.16□□□□□ -1.1
SYNE1-234ENST00000536990 RNASE1P07998 156 aaKnown RBP8.15□□□□□ -1.1
SYNE1-234ENST00000536990 C16orf74Q96GX8 76 aa8.15□□□□□ -1.1
SYNE1-234ENST00000536990 JMJD1CQ15652 2540 aa8.15□□□□□ -1.1
SYNE1-234ENST00000536990 TRGV2A0A075B6R0 118 aa8.15□□□□□ -1.11
SYNE1-234ENST00000536990 PLAC8L1A1L4L8 177 aa8.15□□□□□ -1.11
SYNE1-234ENST00000536990 BAALC-AS2P0C853 105 aa8.15□□□□□ -1.11
SYNE1-234ENST00000536990 ACANP16112 2415 aa8.14□□□□□ -1.11
SYNE1-234ENST00000536990 KRTAP1-1Q07627 177 aa8.14□□□□□ -1.11
SYNE1-234ENST00000536990 SMCR5Q8TEV8 140 aa8.14□□□□□ -1.11
SYNE1-234ENST00000536990 UBE2L6O14933 153 aa8.14□□□□□ -1.11
SYNE1-234ENST00000536990 IGLV1-51P01701 117 aa8.14□□□□□ -1.11
SYNE1-234ENST00000536990 LOC100131303A0A0U1RQF7 123 aa8.13□□□□□ -1.11
SYNE1-234ENST00000536990 SDIM1Q6ZPB5 146 aa8.13□□□□□ -1.11
SYNE1-234ENST00000536990 FAM110AQ9BQ89 295 aa8.13□□□□□ -1.11
SYNE1-234ENST00000536990 RPL28P46779 137 aaKnown RBP8.13□□□□□ -1.11
SYNE1-234ENST00000536990 FAM222AQ5U5X8 452 aa8.13□□□□□ -1.11
SYNE1-234ENST00000536990 COX7B2Q8TF08 81 aa8.13□□□□□ -1.11
SYNE1-234ENST00000536990 IGKV2-28A0A075B6P5 120 aa8.13□□□□□ -1.11
SYNE1-234ENST00000536990 IGKV2D-28P01615 120 aa8.13□□□□□ -1.11
SYNE1-234ENST00000536990 PF4P02776 101 aa8.13□□□□□ -1.11
SYNE1-234ENST00000536990 LINC00337Q8N6G1 96 aa8.13□□□□□ -1.11
SYNE1-234ENST00000536990 C19orf73Q9NVV2 129 aa8.13□□□□□ -1.11
SYNE1-234ENST00000536990 TRAV13-2A0A0B4J235 113 aa8.12□□□□□ -1.11
SYNE1-234ENST00000536990 MIR7-3HGQ8N6C7 128 aa8.12□□□□□ -1.11
SYNE1-234ENST00000536990 CHCHD5Q9BSY4 110 aa8.12□□□□□ -1.11
SYNE1-234ENST00000536990 IMUPQ9GZP8 106 aa8.12□□□□□ -1.11
SYNE1-234ENST00000536990 CUBNO60494 3623 aa8.12□□□□□ -1.11
SYNE1-234ENST00000536990 MTORP42345 2549 aa8.12□□□□□ -1.11
SYNE1-234ENST00000536990 SETXQ7Z333 2677 aaKnown RBP8.12□□□□□ -1.11
SYNE1-234ENST00000536990 TRGV4A0A0C4DH28 118 aa8.11□□□□□ -1.11
SYNE1-234ENST00000536990 TRBV6-4A0A1B0GX49 114 aa8.11□□□□□ -1.11
SYNE1-234ENST00000536990 LINC00643Q86TS7 51 aa8.11□□□□□ -1.11
SYNE1-234ENST00000536990 CSNK1G2-AS1Q8NCQ2 148 aa8.11□□□□□ -1.11
SYNE1-234ENST00000536990 OVOL2Q9BRP0 275 aa8.11□□□□□ -1.11
SYNE1-234ENST00000536990 CRPP02741 224 aa8.11□□□□□ -1.11
SYNE1-234ENST00000536990 Q9HAA7 133 aa8.1□□□□□ -1.11
SYNE1-234ENST00000536990 SND1-IT1Q9HBX3 110 aa8.1□□□□□ -1.11
SYNE1-234ENST00000536990 NIPBLQ6KC79 2804 aaeCLIP8.1□□□□□ -1.11
SYNE1-234ENST00000536990 ANK3Q12955 4377 aaKnown RBP8.1□□□□□ -1.11
SYNE1-234ENST00000536990 IGLV4-60A0A075B6I1 120 aa8.1□□□□□ -1.11
SYNE1-234ENST00000536990 PLA2G2AP14555 144 aa8.09□□□□□ -1.11
SYNE1-234ENST00000536990 IGHV3OR16-9A0A0B4J2B5 98 aa8.09□□□□□ -1.11
SYNE1-234ENST00000536990 TOMM7Q9P0U1 55 aa8.09□□□□□ -1.11
SYNE1-234ENST00000536990 FAM236AA0A1B0GUQ0 79 aa8.08□□□□□ -1.12
SYNE1-234ENST00000536990 FAM236BA0A1B0GV22 79 aa8.08□□□□□ -1.12
SYNE1-234ENST00000536990 MALP21145 153 aa8.08□□□□□ -1.12
SYNE1-234ENST00000536990 PDZD2O15018 2839 aa8.08□□□□□ -1.12
SYNE1-234ENST00000536990 CCL18P55774 89 aa8.08□□□□□ -1.12
SYNE1-234ENST00000536990 SMIM11BQ8TCY0 68 aa8.08□□□□□ -1.12
SYNE1-234ENST00000536990 IGKV3OR2-268A0A0C4DH90 116 aa8.08□□□□□ -1.12
SYNE1-234ENST00000536990 INAFM2P0DMQ5 153 aa8.08□□□□□ -1.12
SYNE1-234ENST00000536990 HILS1P60008 231 aa8.08□□□□□ -1.12
SYNE1-234ENST00000536990 TENM4Q6N022 2769 aa8.08□□□□□ -1.12
SYNE1-234ENST00000536990 TRBV6-8A0A0A6YYG3 113 aa8.07□□□□□ -1.12
SYNE1-234ENST00000536990 LINC00158P58513 81 aa8.07□□□□□ -1.12
SYNE1-234ENST00000536990 FHL2Q14192 279 aa8.07□□□□□ -1.12
SYNE1-234ENST00000536990 A0A087WYN8 130 aa8.07□□□□□ -1.12
SYNE1-234ENST00000536990 A0A087WZ39 114 aa8.06□□□□□ -1.12
SYNE1-234ENST00000536990 IBA57-AS1B1ANH7 110 aa8.06□□□□□ -1.12
SYNE1-234ENST00000536990 GAGE2AQ6NT46 116 aa8.05□□□□□ -1.12
SYNE1-234ENST00000536990 C5orf38Q86SI9 138 aa8.05□□□□□ -1.12
SYNE1-234ENST00000536990 C9orf129Q5T035 196 aaKnown RBP8.05□□□□□ -1.12
SYNE1-234ENST00000536990 ITPR2Q14571 2701 aa8.05□□□□□ -1.12
SYNE1-234ENST00000536990 CXCL5P42830 114 aa8.04□□□□□ -1.12
SYNE1-234ENST00000536990 H0YGX0 51 aa8.04□□□□□ -1.12
SYNE1-234ENST00000536990 DEFB130BP0DP73 79 aa8.04□□□□□ -1.12
SYNE1-234ENST00000536990 DEFB130AP0DP74 79 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms