RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 LINC00959A0A1B0GUT2 108 aa14.47□□□□□ -0.09
VPS28-212ENST00000530836 CDKN2A-AS1Q9UH64 79 aa14.47□□□□□ -0.09
VPS28-212ENST00000530836 APLNQ9ULZ1 77 aa14.46□□□□□ -0.09
VPS28-212ENST00000530836 IGHV1-58A0A0C4DH39 117 aa14.45□□□□□ -0.1
VPS28-212ENST00000530836 COX6A2Q02221 97 aa14.45□□□□□ -0.1
VPS28-212ENST00000530836 LINC00269Q8N2A0 174 aa14.45□□□□□ -0.1
VPS28-212ENST00000530836 IGKV3OR2-268A0A0C4DH90 116 aa14.44□□□□□ -0.1
VPS28-212ENST00000530836 REG3AQ06141 175 aa14.44□□□□□ -0.1
VPS28-212ENST00000530836 MYMXA0A1B0GTQ4 84 aa14.44□□□□□ -0.1
VPS28-212ENST00000530836 J3QQQ9 107 aa14.44□□□□□ -0.1
VPS28-212ENST00000530836 LGALS3P17931 250 aaKnown RBP14.44□□□□□ -0.1
VPS28-212ENST00000530836 CCL18P55774 89 aa14.44□□□□□ -0.1
VPS28-212ENST00000530836 WFDC10BQ8IUB3 73 aa14.42□□□□□ -0.1
VPS28-212ENST00000530836 PRR34Q9NV39 138 aa14.42□□□□□ -0.1
VPS28-212ENST00000530836 IGHV3-30-3P0DP02 117 aa14.41□□□□□ -0.1
VPS28-212ENST00000530836 CTAG1AP78358 180 aa14.41□□□□□ -0.1
VPS28-212ENST00000530836 HIGD1BQ9P298 99 aa14.41□□□□□ -0.1
VPS28-212ENST00000530836 IGHV3OR16-9A0A0B4J2B5 98 aa14.41□□□□□ -0.1
VPS28-212ENST00000530836 ZNF815PA8K554 130 aa14.41□□□□□ -0.1
VPS28-212ENST00000530836 SPINK8P0C7L1 97 aa14.41□□□□□ -0.1
VPS28-212ENST00000530836 LINC01556Q5JQF7 62 aa14.41□□□□□ -0.1
VPS28-212ENST00000530836 C2orf91Q6ZV80 131 aa14.41□□□□□ -0.1
VPS28-212ENST00000530836 MAPKAPK5-AS1Q8N8E1 139 aa14.41□□□□□ -0.1
VPS28-212ENST00000530836 TTTY13Q9BZ97 58 aa14.41□□□□□ -0.1
VPS28-212ENST00000530836 IGLV5-39A0A0G2JS06 123 aa14.39□□□□□ -0.11
VPS28-212ENST00000530836 LINC01561Q8N1V8 128 aa14.39□□□□□ -0.11
VPS28-212ENST00000530836 Q8N3U1 123 aa14.39□□□□□ -0.11
VPS28-212ENST00000530836 TP73-AS1Q9UF72 201 aa14.39□□□□□ -0.11
VPS28-212ENST00000530836 KLK12Q9UKR0 248 aa14.39□□□□□ -0.11
VPS28-212ENST00000530836 IGHV3-64A0A075B6Q5 118 aa14.38□□□□□ -0.11
VPS28-212ENST00000530836 A0A087WZ39 114 aa14.38□□□□□ -0.11
VPS28-212ENST00000530836 TRAV8-3A0A0A6YYJ7 113 aa14.38□□□□□ -0.11
VPS28-212ENST00000530836 SMIM1B2RUZ4 78 aa14.38□□□□□ -0.11
VPS28-212ENST00000530836 KMT2CQ8NEZ4 4911 aaKnown RBP14.38□□□□□ -0.11
VPS28-212ENST00000530836 TRAV8-4A0A0B4J246 113 aa14.37□□□□□ -0.11
VPS28-212ENST00000530836 IGHV3-30P01768 117 aa14.37□□□□□ -0.11
VPS28-212ENST00000530836 IGHV3-33P01772 117 aa14.37□□□□□ -0.11
VPS28-212ENST00000530836 CRPP02741 224 aa14.37□□□□□ -0.11
VPS28-212ENST00000530836 DNAH10OSP0CZ25 163 aa14.37□□□□□ -0.11
VPS28-212ENST00000530836 IGHV3-30-5P0DP03 117 aa14.37□□□□□ -0.11
VPS28-212ENST00000530836 TSPEAR-AS2P59090 65 aa14.37□□□□□ -0.11
VPS28-212ENST00000530836 CLPSL2Q6UWE3 100 aa14.37□□□□□ -0.11
VPS28-212ENST00000530836 CD164L2Q6UWJ8 174 aa14.37□□□□□ -0.11
VPS28-212ENST00000530836 LINC00588Q9Y4M8 146 aa14.37□□□□□ -0.11
VPS28-212ENST00000530836 UPK3BQ9BT76 320 aa14.37□□□□□ -0.11
VPS28-212ENST00000530836 M0R143 59 aa14.36□□□□□ -0.11
VPS28-212ENST00000530836 XCL1P47992 114 aa14.36□□□□□ -0.11
VPS28-212ENST00000530836 SCGB1D4Q6XE38 83 aa14.35□□□□□ -0.11
VPS28-212ENST00000530836 CHCHD10Q8WYQ3 142 aaPredicted RBP14.35□□□□□ -0.11
VPS28-212ENST00000530836 LCE6AA0A183 80 aa14.34□□□□□ -0.11
VPS28-212ENST00000530836 MIAQ16674 131 aa14.34□□□□□ -0.11
VPS28-212ENST00000530836 LINC00476Q8WZB0 136 aa14.34□□□□□ -0.11
VPS28-212ENST00000530836 LYSTQ99698 3801 aa14.34□□□□□ -0.11
VPS28-212ENST00000530836 ENHOQ6UWT2 76 aa14.33□□□□□ -0.11
VPS28-212ENST00000530836 HSD52Q0P140 79 aa14.33□□□□□ -0.12
VPS28-212ENST00000530836 UBE2WQ96B02 151 aa14.32□□□□□ -0.12
VPS28-212ENST00000530836 NDUFA12Q9UI09 145 aa14.32□□□□□ -0.12
VPS28-212ENST00000530836 LY6G6CO95867 125 aa14.31□□□□□ -0.12
VPS28-212ENST00000530836 TAL2Q16559 108 aa14.31□□□□□ -0.12
VPS28-212ENST00000530836 C5orf38Q86SI9 138 aa14.31□□□□□ -0.12
VPS28-212ENST00000530836 K7EP13 123 aa14.3□□□□□ -0.12
VPS28-212ENST00000530836 COX7A2LO14548 114 aa14.3□□□□□ -0.12
VPS28-212ENST00000530836 DNAH1Q9P2D7 4330 aa14.3□□□□□ -0.12
VPS28-212ENST00000530836 SACSQ9NZJ4 4579 aa14.3□□□□□ -0.12
VPS28-212ENST00000530836 IGLV10-54A0A075B6I4 117 aa14.3□□□□□ -0.12
VPS28-212ENST00000530836 NDUFA1O15239 70 aa14.3□□□□□ -0.12
VPS28-212ENST00000530836 LBHQ53QV2 105 aaPredicted RBP14.3□□□□□ -0.12
VPS28-212ENST00000530836 ALMS1Q8TCU4 4167 aa14.29□□□□□ -0.12
VPS28-212ENST00000530836 SFTA2Q6UW10 78 aa14.29□□□□□ -0.12
VPS28-212ENST00000530836 C10orf126Q8N4M7 172 aa14.29□□□□□ -0.12
VPS28-212ENST00000530836 SNHG12Q9BXW3 62 aa14.29□□□□□ -0.12
VPS28-212ENST00000530836 FOXI1Q12951 378 aa14.28□□□□□ -0.12
VPS28-212ENST00000530836 COX7B2Q8TF08 81 aa14.28□□□□□ -0.12
VPS28-212ENST00000530836 MALP21145 153 aa14.27□□□□□ -0.12
VPS28-212ENST00000530836 VPS13DQ5THJ4 4388 aa14.27□□□□□ -0.12
VPS28-212ENST00000530836 GAGE12HA6NDE8 117 aa14.26□□□□□ -0.13
VPS28-212ENST00000530836 HINT1P49773 126 aaPredicted RBP14.26□□□□□ -0.13
VPS28-212ENST00000530836 HERV-K104P63124 156 aa14.26□□□□□ -0.13
VPS28-212ENST00000530836 SPANXB1Q9NS25 103 aaPredicted RBP14.26□□□□□ -0.13
VPS28-212ENST00000530836 APOMO95445 188 aa14.26□□□□□ -0.13
VPS28-212ENST00000530836 HIST1H4GQ99525 98 aa14.26□□□□□ -0.13
VPS28-212ENST00000530836 A0A0J9YXY3 114 aa14.25□□□□□ -0.13
VPS28-212ENST00000530836 TMEM238C9JI98 176 aa14.25□□□□□ -0.13
VPS28-212ENST00000530836 BVES-AS1Q5T3Y7 98 aa14.25□□□□□ -0.13
VPS28-212ENST00000530836 Q8IZM0 81 aa14.25□□□□□ -0.13
VPS28-212ENST00000530836 Q9H8V8 135 aa14.25□□□□□ -0.13
VPS28-212ENST00000530836 IBA57-AS1B1ANH7 110 aa14.24□□□□□ -0.13
VPS28-212ENST00000530836 UBE2DNLQ8IWF7 75 aa14.24□□□□□ -0.13
VPS28-212ENST00000530836 EREGO14944 169 aa14.23□□□□□ -0.13
VPS28-212ENST00000530836 TIMM17BO60830 172 aa14.23□□□□□ -0.13
VPS28-212ENST00000530836 PRSS2P07478 247 aa14.23□□□□□ -0.13
VPS28-212ENST00000530836 SRSF9Q13242 221 aaKnown RBP eCLIP14.23□□□□□ -0.13
VPS28-212ENST00000530836 BATFQ16520 125 aa14.23□□□□□ -0.13
VPS28-212ENST00000530836 ZNF625Q96I27 306 aaPredicted RBP14.23□□□□□ -0.13
VPS28-212ENST00000530836 C1orf43Q9BWL3 253 aa14.23□□□□□ -0.13
VPS28-212ENST00000530836 TOMM7Q9P0U1 55 aa14.23□□□□□ -0.13
VPS28-212ENST00000530836 CIRBPQ14011 172 aaKnown RBP14.23□□□□□ -0.13
VPS28-212ENST00000530836 C6orf226Q5I0X4 101 aa14.22□□□□□ -0.13
VPS28-212ENST00000530836 CEND1Q8N111 149 aa14.22□□□□□ -0.13
VPS28-212ENST00000530836 TM2D2Q9BX73 214 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms