RNA–Protein interactions for RNA: ENST00000529813.1

USP47-208, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 3,123 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-208ENST00000529813 PMCHL2Q9BQD1 86 aa3.09□□□□□ -1.92
USP47-208ENST00000529813 KIAA1109Q2LD37 5005 aa3.09□□□□□ -1.92
USP47-208ENST00000529813 D6R8Y8 96 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 I3L3M4 83 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 HBBP68871 147 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 LINC00173Q6ZV60 143 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 MRAP2Q96G30 205 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 KIR2DL4Q99706 377 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 TMEM191AQ9H0A3 160 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 TRAV13-1A0A0B4J241 112 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 A0A1B0GW15 77 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 FGF6P10767 208 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 SCGB1A1P11684 91 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 GCSHP23434 173 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 XCL1P47992 114 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 MRPL51Q4U2R6 128 aaKnown RBP3.08□□□□□ -1.92
USP47-208ENST00000529813 SLC25A34Q6PIV7 304 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 Q6ZRN7 208 aaPredicted RBP3.08□□□□□ -1.92
USP47-208ENST00000529813 MTURNQ8N3F0 131 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 SMIM20Q8N5G0 67 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 MAPKAPK5-AS1Q8N8E1 139 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 OR5A1Q8NGJ0 315 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 TMEM70Q9BUB7 260 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 GFRA4Q9GZZ7 299 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 FLG2Q5D862 2391 aaPredicted RBP3.08□□□□□ -1.92
USP47-208ENST00000529813 HSBP1O75506 76 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 HIGD2BQ4VC39 106 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 FAM104BQ5XKR9 115 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 ENHOQ6UWT2 76 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 TMEM136Q6ZRR5 245 aa3.08□□□□□ -1.92
USP47-208ENST00000529813 B5MCH6 92 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 USP17L23D6RBM5 183 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 K7EP34 96 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 VCYO14598 125 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 TSPAN13O95857 204 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 SUMO2P61956 95 aaKnown RBP3.07□□□□□ -1.92
USP47-208ENST00000529813 RNF185Q96GF1 192 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 PRELID3AQ96N28 172 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 KRTAP4-8Q9BYQ9 185 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 SPCS1Q9Y6A9 102 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 SMIM27A0A1W2PRY6 76 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 KRTAP10-1P60331 282 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 LAGE3Q14657 143 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 MIAQ16674 131 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 Q8N814 137 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 C20orf203Q8NBC4 194 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 C18orf32Q8TCD1 76 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 LINC00526Q96FQ7 95 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 CNFNQ9BYD5 112 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 AP5S1Q9NUS5 200 aa3.07□□□□□ -1.92
USP47-208ENST00000529813 C9orf118A6NHY6 69 aa3.06□□□□□ -1.92
USP47-208ENST00000529813 TNFRSF6BO95407 300 aa3.06□□□□□ -1.92
USP47-208ENST00000529813 NPYP01303 97 aa3.06□□□□□ -1.92
USP47-208ENST00000529813 CHCHD7Q9BUK0 85 aa3.06□□□□□ -1.92
USP47-208ENST00000529813 DNAH2Q9P225 4427 aa3.06□□□□□ -1.92
USP47-208ENST00000529813 MALP21145 153 aa3.06□□□□□ -1.92
USP47-208ENST00000529813 RPL39P62891 51 aaKnown RBP3.06□□□□□ -1.92
USP47-208ENST00000529813 ETDBQ3ZM63 59 aa3.06□□□□□ -1.92
USP47-208ENST00000529813 C2orf91Q6ZV80 131 aa3.06□□□□□ -1.92
USP47-208ENST00000529813 ORMDL3Q8N138 153 aa3.06□□□□□ -1.92
USP47-208ENST00000529813 GNB1LQ9BYB4 327 aa3.06□□□□□ -1.92
USP47-208ENST00000529813 LRCOL1A6NCL2 159 aa3.06□□□□□ -1.92
USP47-208ENST00000529813 K7EMI3 77 aa3.06□□□□□ -1.92
USP47-208ENST00000529813 PPP1R17O96001 155 aa3.06□□□□□ -1.92
USP47-208ENST00000529813 TSHBP01222 138 aa3.06□□□□□ -1.92
USP47-208ENST00000529813 CHCHD10Q8WYQ3 142 aaPredicted RBP3.06□□□□□ -1.92
USP47-208ENST00000529813 C20orf78Q9BR46 151 aa3.06□□□□□ -1.92
USP47-208ENST00000529813 IGKV2-24A0A0C4DH68 120 aa3.05□□□□□ -1.92
USP47-208ENST00000529813 RPL32P62910 135 aaKnown RBP3.05□□□□□ -1.92
USP47-208ENST00000529813 SS18Q15532 418 aa3.05□□□□□ -1.92
USP47-208ENST00000529813 C5orf38Q86SI9 138 aa3.05□□□□□ -1.92
USP47-208ENST00000529813 OPRPNQ99935 248 aaPredicted RBP3.05□□□□□ -1.92
USP47-208ENST00000529813 SRRM2Q9UQ35 2752 aaKnown RBP3.05□□□□□ -1.92
USP47-208ENST00000529813 A0A1W2PPM0 123 aa3.05□□□□□ -1.92
USP47-208ENST00000529813 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.05□□□□□ -1.92
USP47-208ENST00000529813 C14orf177Q52M58 125 aa3.05□□□□□ -1.92
USP47-208ENST00000529813 MAP1LC3AQ9H492 121 aa3.05□□□□□ -1.92
USP47-208ENST00000529813 SYS1-DBNDD2H3BUS1 97 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 MT-ATP8P03928 68 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 POLR2KP53803 58 aaKnown RBP3.04□□□□□ -1.92
USP47-208ENST00000529813 PRSS3P2Q8NHM4 247 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 URB1-AS1Q96HZ7 61 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 SMIM2Q9BVW6 85 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 H3BRM9 83 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 SPINK8P0C7L1 97 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 Q6ZUT4 128 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 NRACQ8N912 160 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 FAM30AQ9NZY2 134 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 DYNC1H1Q14204 4646 aaKnown RBP3.04□□□□□ -1.92
USP47-208ENST00000529813 PKHD1P08F94 4074 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.04□□□□□ -1.92
USP47-208ENST00000529813 TRAV8-4A0A0B4J246 113 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 TRBV6-5A0A0K0K1A5 114 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 EPM2AB3EWF7 344 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 ZNF561-AS1K7EIQ3 104 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 K7ERJ3 54 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 PRSS1P07477 247 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 FABP2P12104 132 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 SEC11AP67812 179 aa3.04□□□□□ -1.92
USP47-208ENST00000529813 SPANXB1Q9NS25 103 aaPredicted RBP3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms