RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 GAGE2AQ6NT46 116 aa10.2□□□□□ -0.78
USP48-213ENST00000529637 TIMM17BO60830 172 aa10.2□□□□□ -0.78
USP48-213ENST00000529637 SDIM1Q6ZPB5 146 aa10.2□□□□□ -0.78
USP48-213ENST00000529637 INSP01308 110 aa10.19□□□□□ -0.78
USP48-213ENST00000529637 C9orf129Q5T035 196 aaKnown RBP10.19□□□□□ -0.78
USP48-213ENST00000529637 C2orf48Q96LS8 159 aa10.19□□□□□ -0.78
USP48-213ENST00000529637 NOTCH2Q04721 2471 aa10.19□□□□□ -0.78
USP48-213ENST00000529637 IGHV3-53P01767 116 aa10.19□□□□□ -0.78
USP48-213ENST00000529637 FSHBP01225 129 aa10.18□□□□□ -0.78
USP48-213ENST00000529637 C5orf38Q86SI9 138 aa10.18□□□□□ -0.78
USP48-213ENST00000529637 EDA2RQ9HAV5 297 aa10.18□□□□□ -0.78
USP48-213ENST00000529637 NIPBLQ6KC79 2804 aaeCLIP10.18□□□□□ -0.783e-6■□□□□ 10.6
USP48-213ENST00000529637 PIK3CD-AS1Q5SR53 167 aa10.18□□□□□ -0.78
USP48-213ENST00000529637 FAM19A5Q7Z5A7 132 aaPredicted RBP10.18□□□□□ -0.78
USP48-213ENST00000529637 STHQ8IWL8 128 aa10.18□□□□□ -0.78
USP48-213ENST00000529637 C4orf3Q8WVX3 66 aa10.18□□□□□ -0.78
USP48-213ENST00000529637 TRGV1A0A0A0MS02 117 aa10.18□□□□□ -0.78
USP48-213ENST00000529637 DEFB114Q30KQ6 69 aa10.18□□□□□ -0.78
USP48-213ENST00000529637 FN1P02751 2386 aaKnown RBP10.17□□□□□ -0.78
USP48-213ENST00000529637 hADV29S1A0JD25 119 aa10.17□□□□□ -0.78
USP48-213ENST00000529637 CIRBPQ14011 172 aaKnown RBP10.17□□□□□ -0.78
USP48-213ENST00000529637 RNF152Q8N8N0 203 aa10.17□□□□□ -0.78
USP48-213ENST00000529637 UBR5O95071 2799 aaPredicted RBP10.17□□□□□ -0.78
USP48-213ENST00000529637 COX7CP15954 63 aa10.16□□□□□ -0.78
USP48-213ENST00000529637 TRAV13-1A0A0B4J241 112 aa10.16□□□□□ -0.78
USP48-213ENST00000529637 LINC00242Q5T6M2 205 aa10.15□□□□□ -0.78
USP48-213ENST00000529637 ZNF843Q8N446 348 aa10.15□□□□□ -0.78
USP48-213ENST00000529637 IGLV5-45A0A087WSX0 123 aa10.14□□□□□ -0.79
USP48-213ENST00000529637 IGLV5-39A0A0G2JS06 123 aa10.14□□□□□ -0.79
USP48-213ENST00000529637 TRACP01848 142 aa10.14□□□□□ -0.79
USP48-213ENST00000529637 IGKV3D-7A0A0C4DH55 119 aa10.13□□□□□ -0.79
USP48-213ENST00000529637 PRIMA1Q86XR5 153 aa10.13□□□□□ -0.79
USP48-213ENST00000529637 KIR2DL5BQ8NHK3 375 aa10.13□□□□□ -0.79
USP48-213ENST00000529637 A0A087WVE0 104 aa10.13□□□□□ -0.79
USP48-213ENST00000529637 SMIM1B2RUZ4 78 aa10.13□□□□□ -0.79
USP48-213ENST00000529637 HIST2H2BCQ6DN03 193 aa10.13□□□□□ -0.79
USP48-213ENST00000529637 WFDC11Q8NEX6 87 aa10.13□□□□□ -0.79
USP48-213ENST00000529637 ODF3L2Q3SX64 289 aa10.12□□□□□ -0.79
USP48-213ENST00000529637 HIVEP2P31629 2446 aa10.12□□□□□ -0.79
USP48-213ENST00000529637 J3KT08 172 aa10.12□□□□□ -0.79
USP48-213ENST00000529637 C11orf72Q8NBR9 251 aa10.12□□□□□ -0.79
USP48-213ENST00000529637 CXCL5P42830 114 aa10.12□□□□□ -0.79
USP48-213ENST00000529637 AKAP9Q99996 3911 aa10.12□□□□□ -0.79
USP48-213ENST00000529637 SMIM9A6NGZ8 99 aa10.11□□□□□ -0.79
USP48-213ENST00000529637 DNAJC9-AS1A6NH13 148 aa10.11□□□□□ -0.79
USP48-213ENST00000529637 MALP21145 153 aa10.11□□□□□ -0.79
USP48-213ENST00000529637 HIST1H4AP62805 103 aaKnown RBP10.11□□□□□ -0.79
USP48-213ENST00000529637 C14orf132Q9NPU4 83 aa10.11□□□□□ -0.79
USP48-213ENST00000529637 CCL24O00175 119 aa10.11□□□□□ -0.79
USP48-213ENST00000529637 CRYGAP11844 174 aa10.11□□□□□ -0.79
USP48-213ENST00000529637 A0A087WYN8 130 aa10.1□□□□□ -0.79
USP48-213ENST00000529637 LRRC75A-AS1Q8N1F1 130 aa10.1□□□□□ -0.79
USP48-213ENST00000529637 SETXQ7Z333 2677 aaKnown RBP10.1□□□□□ -0.79
USP48-213ENST00000529637 ATP5G1P05496 136 aa10.09□□□□□ -0.79
USP48-213ENST00000529637 Q6ZTI0 123 aa10.09□□□□□ -0.79
USP48-213ENST00000529637 LINC00337Q8N6G1 96 aa10.09□□□□□ -0.79
USP48-213ENST00000529637 RPL35AP18077 110 aaKnown RBP10.09□□□□□ -0.79
USP48-213ENST00000529637 A8MTW9 85 aa10.09□□□□□ -0.79
USP48-213ENST00000529637 A0A1B0GX51 115 aa10.08□□□□□ -0.8
USP48-213ENST00000529637 C1orf158Q8N1D5 194 aa10.08□□□□□ -0.8
USP48-213ENST00000529637 NOP10Q9NPE3 64 aaKnown RBP10.08□□□□□ -0.8
USP48-213ENST00000529637 LINC00846Q9NV44 126 aa10.08□□□□□ -0.8
USP48-213ENST00000529637 INAFM2P0DMQ5 153 aa10.08□□□□□ -0.8
USP48-213ENST00000529637 RPL36AP83881 106 aaKnown RBP10.08□□□□□ -0.8
USP48-213ENST00000529637 C5orf47Q569G3 176 aa10.08□□□□□ -0.8
USP48-213ENST00000529637 RPL36ALQ969Q0 106 aaKnown RBP10.08□□□□□ -0.8
USP48-213ENST00000529637 WFDC10AQ9H1F0 79 aa10.08□□□□□ -0.8
USP48-213ENST00000529637 OXTP01178 125 aa10.07□□□□□ -0.8
USP48-213ENST00000529637 FAM222AQ5U5X8 452 aa10.07□□□□□ -0.8
USP48-213ENST00000529637 ITPR2Q14571 2701 aa10.07□□□□□ -0.8
USP48-213ENST00000529637 IGKV3OR2-268A0A0C4DH90 116 aa10.07□□□□□ -0.8
USP48-213ENST00000529637 ZNF469Q96JG9 3925 aaPredicted RBP10.07□□□□□ -0.8
USP48-213ENST00000529637 NBPF19A0A087WUL8 3843 aa10.07□□□□□ -0.8
USP48-213ENST00000529637 IGKV2-28A0A075B6P5 120 aa10.07□□□□□ -0.8
USP48-213ENST00000529637 TRGV2A0A075B6R0 118 aa10.07□□□□□ -0.8
USP48-213ENST00000529637 ATOX1O00244 68 aa10.07□□□□□ -0.8
USP48-213ENST00000529637 IGKV2D-28P01615 120 aa10.07□□□□□ -0.8
USP48-213ENST00000529637 F5H768 121 aa10.06□□□□□ -0.8
USP48-213ENST00000529637 DSCR8Q96T75 97 aa10.06□□□□□ -0.8
USP48-213ENST00000529637 RPL18AQ02543 176 aaKnown RBP10.06□□□□□ -0.8
USP48-213ENST00000529637 ESM1Q9NQ30 184 aa10.06□□□□□ -0.8
USP48-213ENST00000529637 DNAL4O96015 105 aa10.05□□□□□ -0.8
USP48-213ENST00000529637 LINC01561Q8N1V8 128 aa10.05□□□□□ -0.8
USP48-213ENST00000529637 NTM-AS1Q6ZSK4 140 aa10.05□□□□□ -0.8
USP48-213ENST00000529637 NCR3O14931 201 aa10.04□□□□□ -0.8
USP48-213ENST00000529637 SLPIP03973 132 aa10.04□□□□□ -0.8
USP48-213ENST00000529637 RPL28P46779 137 aaKnown RBP10.04□□□□□ -0.8
USP48-213ENST00000529637 MIR7-3HGQ8N6C7 128 aa10.04□□□□□ -0.8
USP48-213ENST00000529637 SMIM11BQ8TCY0 68 aa10.04□□□□□ -0.8
USP48-213ENST00000529637 DPH3Q96FX2 82 aa10.04□□□□□ -0.8
USP48-213ENST00000529637 K7EQD1 137 aa10.03□□□□□ -0.8
USP48-213ENST00000529637 UBE2L6O14933 153 aa10.03□□□□□ -0.8
USP48-213ENST00000529637 KRTAP1-3Q8IUG1 177 aa10.03□□□□□ -0.8
USP48-213ENST00000529637 UPK3BQ9BT76 320 aa10.03□□□□□ -0.8
USP48-213ENST00000529637 CRPP02741 224 aa10.03□□□□□ -0.8
USP48-213ENST00000529637 GCN1Q92616 2671 aaKnown RBP10.02□□□□□ -0.8
USP48-213ENST00000529637 TRAV25A0A0B4J276 109 aa10.02□□□□□ -0.81
USP48-213ENST00000529637 HELZ2Q9BYK8 2649 aaKnown RBP10.02□□□□□ -0.81
USP48-213ENST00000529637 TMEM86BQ8N661 226 aa10.02□□□□□ -0.81
USP48-213ENST00000529637 NBEAL2Q6ZNJ1 2754 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 144.7 ms