RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 PGPEP1Q9NXJ5 209 aa11.12□□□□□ -0.63
USH1C-204ENST00000526313 RPL24P83731 157 aaKnown RBP11.11□□□□□ -0.63
USH1C-204ENST00000526313 ADAMTSL4-AS1Q5T5F5 129 aa11.11□□□□□ -0.63
USH1C-204ENST00000526313 IGLV4-60A0A075B6I1 120 aa11.1□□□□□ -0.63
USH1C-204ENST00000526313 A4D1N5 150 aa11.1□□□□□ -0.63
USH1C-204ENST00000526313 APOMO95445 188 aa11.1□□□□□ -0.63
USH1C-204ENST00000526313 TSPAN13O95857 204 aa11.1□□□□□ -0.63
USH1C-204ENST00000526313 EIF4EBP3O60516 100 aaPredicted RBP11.09□□□□□ -0.63
USH1C-204ENST00000526313 CHCHD5Q9BSY4 110 aa11.09□□□□□ -0.63
USH1C-204ENST00000526313 DEFB4AO15263 64 aa11.09□□□□□ -0.63
USH1C-204ENST00000526313 A0A0B4J2C4 111 aa11.08□□□□□ -0.64
USH1C-204ENST00000526313 PAX4O43316 350 aa11.08□□□□□ -0.64
USH1C-204ENST00000526313 PRO1854Q9UHT4 67 aa11.08□□□□□ -0.64
USH1C-204ENST00000526313 A0A1B0GUV1 79 aa11.08□□□□□ -0.64
USH1C-204ENST00000526313 MIAQ16674 131 aa11.08□□□□□ -0.64
USH1C-204ENST00000526313 DAD1P61803 113 aa11.07□□□□□ -0.64
USH1C-204ENST00000526313 EGFEM1PQ0D2K5 195 aa11.07□□□□□ -0.64
USH1C-204ENST00000526313 CELA1Q9UNI1 258 aa11.07□□□□□ -0.64
USH1C-204ENST00000526313 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.06□□□□□ -0.64
USH1C-204ENST00000526313 KRTAP10-11P60412 298 aa11.06□□□□□ -0.64
USH1C-204ENST00000526313 OXLD1Q5BKU9 147 aa11.06□□□□□ -0.64
USH1C-204ENST00000526313 ZNF625Q96I27 306 aaPredicted RBP11.06□□□□□ -0.64
USH1C-204ENST00000526313 CMYA5Q8N3K9 4069 aa11.06□□□□□ -0.64
USH1C-204ENST00000526313 ATP5G1P05496 136 aa11.05□□□□□ -0.64
USH1C-204ENST00000526313 SPART-AS1P0CW21 52 aa11.05□□□□□ -0.64
USH1C-204ENST00000526313 IGHV3OR16-9A0A0B4J2B5 98 aa11.05□□□□□ -0.64
USH1C-204ENST00000526313 IGHV3-33P01772 117 aa11.05□□□□□ -0.64
USH1C-204ENST00000526313 IFITM1P13164 125 aa11.05□□□□□ -0.64
USH1C-204ENST00000526313 SHISA2Q6UWI4 295 aa11.05□□□□□ -0.64
USH1C-204ENST00000526313 Q9H8V8 135 aa11.05□□□□□ -0.64
USH1C-204ENST00000526313 FBN1P35555 2871 aaKnown RBP11.03□□□□□ -0.64
USH1C-204ENST00000526313 TRAV26-1A0A087WT03 109 aa11.03□□□□□ -0.64
USH1C-204ENST00000526313 PRSS2P07478 247 aa11.03□□□□□ -0.64
USH1C-204ENST00000526313 F8W1H4 67 aa11.02□□□□□ -0.64
USH1C-204ENST00000526313 H3BMG7 143 aa11.02□□□□□ -0.64
USH1C-204ENST00000526313 CIRBPQ14011 172 aaKnown RBP11.02□□□□□ -0.64
USH1C-204ENST00000526313 C3orf56Q8N813 242 aa11.02□□□□□ -0.64
USH1C-204ENST00000526313 LINC00959A0A1B0GUT2 108 aa11.02□□□□□ -0.65
USH1C-204ENST00000526313 HERV-K104P63124 156 aa11.02□□□□□ -0.65
USH1C-204ENST00000526313 PRO0461Q9UI25 63 aa11.02□□□□□ -0.65
USH1C-204ENST00000526313 A0A087WZ39 114 aa11.01□□□□□ -0.65
USH1C-204ENST00000526313 G3V4G9 280 aa11.01□□□□□ -0.65
USH1C-204ENST00000526313 LYRM7Q5U5X0 104 aa11□□□□□ -0.65
USH1C-204ENST00000526313 A0A096LPF7 62 aa11□□□□□ -0.65
USH1C-204ENST00000526313 TEX48A0A1B0GUV7 120 aa11□□□□□ -0.65
USH1C-204ENST00000526313 PPDPFQ9H3Y8 114 aa11□□□□□ -0.65
USH1C-204ENST00000526313 ERG28Q9UKR5 140 aa11□□□□□ -0.65
USH1C-204ENST00000526313 DNAH3Q8TD57 4116 aa10.99□□□□□ -0.65
USH1C-204ENST00000526313 LOC107984156A0A0G2JMH3 177 aa10.99□□□□□ -0.65
USH1C-204ENST00000526313 TMEM262E9PQX1 116 aa10.99□□□□□ -0.65
USH1C-204ENST00000526313 PRIMA1Q86XR5 153 aa10.99□□□□□ -0.65
USH1C-204ENST00000526313 ARL17AQ8IVW1 177 aa10.99□□□□□ -0.65
USH1C-204ENST00000526313 COX7B2Q8TF08 81 aa10.99□□□□□ -0.65
USH1C-204ENST00000526313 IGKV3OR2-268A0A0C4DH90 116 aa10.98□□□□□ -0.65
USH1C-204ENST00000526313 MRPL23Q16540 153 aaKnown RBP10.98□□□□□ -0.65
USH1C-204ENST00000526313 LINC00308Q8TCZ7 52 aa10.98□□□□□ -0.65
USH1C-204ENST00000526313 TRBV20-1A0A075B6N2 111 aa10.97□□□□□ -0.65
USH1C-204ENST00000526313 SH2D6Q7Z4S9 175 aa10.97□□□□□ -0.65
USH1C-204ENST00000526313 WFDC2Q14508 124 aa10.97□□□□□ -0.65
USH1C-204ENST00000526313 SFTA2Q6UW10 78 aa10.97□□□□□ -0.65
USH1C-204ENST00000526313 DAND5Q8N907 189 aa10.97□□□□□ -0.65
USH1C-204ENST00000526313 LINC01561Q8N1V8 128 aa10.96□□□□□ -0.65
USH1C-204ENST00000526313 STAB1Q9NY15 2570 aa10.96□□□□□ -0.66
USH1C-204ENST00000526313 CYSRT1A8MQ03 144 aa10.96□□□□□ -0.66
USH1C-204ENST00000526313 TCL1BO95988 128 aa10.96□□□□□ -0.66
USH1C-204ENST00000526313 SS18Q15532 418 aa10.96□□□□□ -0.66
USH1C-204ENST00000526313 PSMB2P49721 201 aa10.95□□□□□ -0.66
USH1C-204ENST00000526313 NPC2P61916 151 aa10.95□□□□□ -0.66
USH1C-204ENST00000526313 COPS9Q8WXC6 57 aa10.95□□□□□ -0.66
USH1C-204ENST00000526313 TRBV30A0A0K0K1B3 111 aa10.94□□□□□ -0.66
USH1C-204ENST00000526313 SOSTDC1Q6X4U4 206 aa10.94□□□□□ -0.66
USH1C-204ENST00000526313 ICOSQ9Y6W8 199 aa10.94□□□□□ -0.66
USH1C-204ENST00000526313 LELP1Q5T871 98 aa10.94□□□□□ -0.66
USH1C-204ENST00000526313 C5orf38Q86SI9 138 aa10.94□□□□□ -0.66
USH1C-204ENST00000526313 PKD1L1Q8TDX9 2849 aa10.93□□□□□ -0.66
USH1C-204ENST00000526313 MEIG1Q5JSS6 88 aa10.93□□□□□ -0.66
USH1C-204ENST00000526313 ANK2Q01484 3957 aa10.93□□□□□ -0.66
USH1C-204ENST00000526313 SMCPP49901 116 aaPredicted RBP10.93□□□□□ -0.66
USH1C-204ENST00000526313 SCGB1C2P0DMR2 95 aa10.92□□□□□ -0.66
USH1C-204ENST00000526313 HTN3P15516 51 aa10.92□□□□□ -0.66
USH1C-204ENST00000526313 C11orf68Q9H3H3 251 aaKnown RBP10.92□□□□□ -0.66
USH1C-204ENST00000526313 RETNQ9HD89 108 aa10.92□□□□□ -0.66
USH1C-204ENST00000526313 H3BNG1 76 aa10.91□□□□□ -0.66
USH1C-204ENST00000526313 H7C2G1 150 aa10.91□□□□□ -0.66
USH1C-204ENST00000526313 LINC00269Q8N2A0 174 aa10.91□□□□□ -0.66
USH1C-204ENST00000526313 A0A0U1RRA0 63 aa10.91□□□□□ -0.66
USH1C-204ENST00000526313 XCL1P47992 114 aa10.91□□□□□ -0.66
USH1C-204ENST00000526313 TOMM7Q9P0U1 55 aa10.91□□□□□ -0.66
USH1C-204ENST00000526313 CD164L2Q6UWJ8 174 aa10.9□□□□□ -0.66
USH1C-204ENST00000526313 Q8N3U1 123 aa10.9□□□□□ -0.66
USH1C-204ENST00000526313 TRIAP1O43715 76 aa10.9□□□□□ -0.67
USH1C-204ENST00000526313 IBA57-AS1B1ANH7 110 aa10.89□□□□□ -0.67
USH1C-204ENST00000526313 REG3AQ06141 175 aa10.89□□□□□ -0.67
USH1C-204ENST00000526313 Q1RN00 199 aa10.89□□□□□ -0.67
USH1C-204ENST00000526313 CLPSL2Q6UWE3 100 aa10.89□□□□□ -0.67
USH1C-204ENST00000526313 MTURNQ8N3F0 131 aa10.89□□□□□ -0.67
USH1C-204ENST00000526313 MAST4O15021 2626 aa10.88□□□□□ -0.67
USH1C-204ENST00000526313 ETDBQ3ZM63 59 aa10.88□□□□□ -0.67
USH1C-204ENST00000526313 LYPD5Q6UWN5 251 aa10.88□□□□□ -0.67
USH1C-204ENST00000526313 Q8IZM0 81 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms