RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 TMEM105Q8N8V8 129 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 TMEM263Q8WUH6 116 aaKnown RBP1.39□□□□□ -2.19
CD44-216ENST00000525293 LINC00467Q9BRT7 94 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 TIMM8BQ9Y5J9 83 aaPredicted RBP1.39□□□□□ -2.19
CD44-216ENST00000525293 RICTORQ6R327 1708 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 TNS1Q9HBL0 1735 aaKnown RBP1.39□□□□□ -2.19
CD44-216ENST00000525293 NCOR2Q9Y618 2525 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 THADAQ6YHU6 1953 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 SPTBN4Q9H254 2564 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 LAMB2P55268 1798 aa1.39□□□□□ -2.19
CD44-216ENST00000525293 COL14A1Q05707 1796 aaKnown RBP1.39□□□□□ -2.19
CD44-216ENST00000525293 LRP4O75096 1905 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 ANKRD12Q6UB98 2062 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 CCDC168Q8NDH2 2452 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 PLXNA3P51805 1871 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 MYO16Q9Y6X6 1858 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 IGLV2-18A0A075B6J9 118 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 IGKV2D-24A0A075B6R9 120 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 IGHV1-18A0A0C4DH31 117 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 CD24P25063 80 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 ATP5EP2Q5VTU8 51 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 LINC01560Q8TB33 94 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 TMEM254Q8TBM7 123 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 ZNF355PQ9NSJ1 428 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 LINC00846Q9NV44 126 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 C22orf24Q9Y442 160 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 TIMM9Q9Y5J7 89 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 FAM208AQ9UK61 1670 aaKnown RBP1.38□□□□□ -2.19
CD44-216ENST00000525293 KIAA1549LQ6ZVL6 1849 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 SAMD9LQ8IVG5 1584 aa1.38□□□□□ -2.19
CD44-216ENST00000525293 SZT2Q5T011 3432 aa1.37□□□□□ -2.19
CD44-216ENST00000525293 ZNF831Q5JPB2 1677 aa1.37□□□□□ -2.19
CD44-216ENST00000525293 IGLV11-55A0A075B6I3 123 aa1.37□□□□□ -2.19
CD44-216ENST00000525293 A0A087WSZ3 146 aa1.37□□□□□ -2.19
CD44-216ENST00000525293 CTXND1A0A1B0GTU2 59 aa1.37□□□□□ -2.19
CD44-216ENST00000525293 PIN1P1O15428 100 aa1.37□□□□□ -2.19
CD44-216ENST00000525293 ENHOQ6UWT2 76 aa1.37□□□□□ -2.19
CD44-216ENST00000525293 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.37□□□□□ -2.19
CD44-216ENST00000525293 WFDC9Q8NEX5 89 aa1.37□□□□□ -2.19
CD44-216ENST00000525293 TTTY12Q9BZ98 90 aa1.37□□□□□ -2.19
CD44-216ENST00000525293 LHFPL6Q9Y693 200 aa1.37□□□□□ -2.19
CD44-216ENST00000525293 SIP14410 1827 aa1.37□□□□□ -2.19
CD44-216ENST00000525293 PLXNA2O75051 1894 aa1.37□□□□□ -2.19
CD44-216ENST00000525293 LCTP09848 1927 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 NUMA1Q14980 2115 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 CELSR3Q9NYQ7 3312 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 IGKV2-28A0A075B6P5 120 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 A0A0J9YY99 117 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 TRBV6-5A0A0K0K1A5 114 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 ODF3BA8MYP8 253 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 H3BPC8 53 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 H3BQ85 93 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 J3QRE1 110 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 PPP1R17O96001 155 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 IGKV2D-28P01615 120 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 IGHV3-30P01768 117 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 IGHV3-30-5P0DP03 117 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 SPINK7P58062 85 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 SERF2P84101 59 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 FXYD3Q14802 87 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 KRTAP26-1Q6PEX3 210 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 CPAMD8Q8IZJ3 1885 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 C9orf163Q8N9P6 203 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 WFDC6Q9BQY6 131 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 C14orf132Q9NPU4 83 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 KALRNO60229 2985 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 GCN1Q92616 2671 aaKnown RBP1.36□□□□□ -2.19
CD44-216ENST00000525293 ANKRD36A6QL64 1941 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 PTPRSQ13332 1948 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 EML5Q05BV3 1969 aa1.36□□□□□ -2.19
CD44-216ENST00000525293 E9PCH4 1651 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 UBR3Q6ZT12 1888 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 NYNRINQ9P2P1 1898 aaKnown RBP1.35□□□□□ -2.19
CD44-216ENST00000525293 TRIOBPQ9H2D6 2365 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 IGKV3-7A0A075B6H7 116 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 TRBV6-6A0A0A6YYG2 114 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 TRAV21A0A0B4J279 112 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 TRAV40A0A0B4J280 105 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 IGHV3-64DA0A0J9YX35 117 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 SPRR5A0A1B0GTR4 108 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 M0R135 149 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 IGKV1-17P01599 117 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 SAA2P0DJI9 122 aaPredicted RBP1.35□□□□□ -2.19
CD44-216ENST00000525293 SPAG11BQ08648 103 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 NREPQ16612 68 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 KRTAP25-1Q3LHN0 102 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 SPAG11AQ6PDA7 123 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 RPS27LQ71UM5 84 aaKnown RBP1.35□□□□□ -2.19
CD44-216ENST00000525293 TXNDC17Q9BRA2 123 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 PLAC8Q9NZF1 115 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 MRPL36Q9P0J6 103 aaKnown RBP1.35□□□□□ -2.19
CD44-216ENST00000525293 ORMDL1Q9P0S3 153 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 AFDNP55196 1824 aaKnown RBP1.35□□□□□ -2.19
CD44-216ENST00000525293 C3P01024 1663 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 DOCK9Q9BZ29 2069 aa1.35□□□□□ -2.19
CD44-216ENST00000525293 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.35□□□□□ -2.19
CD44-216ENST00000525293 VCANP13611 3396 aa1.34□□□□□ -2.19
CD44-216ENST00000525293 PAPPA2Q9BXP8 1791 aa1.34□□□□□ -2.19
CD44-216ENST00000525293 CFAP47Q6ZTR5 3102 aa1.34□□□□□ -2.19
CD44-216ENST00000525293 IGLV10-54A0A075B6I4 117 aa1.34□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms